mRNA_P-wetherbeei_contig18198.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18198.1.1
Unique NamemRNA_P-wetherbeei_contig18198.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18198.1.1 vs. uniprot
Match: A0A1H6P3S1_9BRAD (Uncharacterized protein n=2 Tax=unclassified Tardiphaga TaxID=2631404 RepID=A0A1H6P3S1_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 1.330e-9
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 MDQTVAELNIEHFRKLLLTSLDDEKRAMVKKLLAAEEAKLATILRQR 141
            MD++VA+LNI HF++LL T  DD+KR ++ +LLA EEAKLA++L+ R
Sbjct:    1 MDKSVADLNIAHFKRLLETETDDDKRKLLMRLLAEEEAKLASMLKNR 47
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BLAST of mRNA_P-wetherbeei_contig18198.1.1 vs. uniprot
Match: A0A318T990_9BRAD (Uncharacterized protein n=1 Tax=Rhodopseudomonas faecalis TaxID=99655 RepID=A0A318T990_9BRAD)

HSP 1 Score: 55.8 bits (133), Expect = 2.570e-9
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 MDQTVAELNIEHFRKLLLTSLDDEKRAMVKKLLAAEEAKLATILRQRK 144
            MD++VA LNIEH+R+LL T +DD KR  + KLLA EEA LA+++R  K
Sbjct:    1 MDKSVARLNIEHYRRLLATDIDDCKRQTIIKLLAQEEATLASLIRSEK 48
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BLAST of mRNA_P-wetherbeei_contig18198.1.1 vs. uniprot
Match: UPI001E40F8BA (hypothetical protein n=1 Tax=Aurantimonas sp. VKM B-3413 TaxID=2779401 RepID=UPI001E40F8BA)

HSP 1 Score: 54.7 bits (130), Expect = 7.370e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 MDQTVAELNIEHFRKLLLTSLDDEKRAMVKKLLAAEEAKLATILRQ 138
            MD+++A+LNIEHFRKLL    D +KR M+ +LLA EEAKLA   +Q
Sbjct:    1 MDESIAQLNIEHFRKLLTKETDAKKREMILRLLAEEEAKLAACRKQ 46
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BLAST of mRNA_P-wetherbeei_contig18198.1.1 vs. uniprot
Match: A0A3D9YTX4_9HYPH (Uncharacterized protein n=1 Tax=Methylovirgula ligni TaxID=569860 RepID=A0A3D9YTX4_9HYPH)

HSP 1 Score: 47.0 bits (110), Expect = 1.110e-5
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   13 VAELNIEHFRKLLLTSLDDEKRAMVKKLLAAEEAKLA 123
            +AELNIEHF +LL T LDD+ R  V++LLA E+A+LA
Sbjct:   11 IAELNIEHFSRLLQTPLDDQTRQTVERLLAEEKARLA 47
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BLAST of mRNA_P-wetherbeei_contig18198.1.1 vs. uniprot
Match: UPI0016433B2B (hypothetical protein n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI0016433B2B)

HSP 1 Score: 45.8 bits (107), Expect = 2.530e-5
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MDQTVAELNIEHFRKLLLTSLDDEKRAMVKKLLAAEEAKL 120
            MD+ +AE NI H+++LL T LD++KR  ++ LL  EEAKL
Sbjct:    1 MDRFIAEQNIAHYKRLLATELDEQKRQAIRHLLVDEEAKL 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1H6P3S1_9BRAD1.330e-957.45Uncharacterized protein n=2 Tax=unclassified Tardi... [more]
A0A318T990_9BRAD2.570e-958.33Uncharacterized protein n=1 Tax=Rhodopseudomonas f... [more]
UPI001E40F8BA7.370e-958.70hypothetical protein n=1 Tax=Aurantimonas sp. VKM ... [more]
A0A3D9YTX4_9HYPH1.110e-562.16Uncharacterized protein n=1 Tax=Methylovirgula lig... [more]
UPI0016433B2B2.530e-552.50hypothetical protein n=1 Tax=Bradyrhizobium guangd... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18198contigP-wetherbeei_contig18198:804..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.6667318-CDS-P-wetherbeei_contig18198:803..9501683186138.6667318-CDS-P-wetherbeei_contig18198:803..950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18198 804..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18198.1.1prot_P-wetherbeei_contig18198.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18198 804..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18198.1.1

>prot_P-wetherbeei_contig18198.1.1 ID=prot_P-wetherbeei_contig18198.1.1|Name=mRNA_P-wetherbeei_contig18198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
MDQTVAELNIEHFRKLLLTSLDDEKRAMVKKLLAAEEAKLATILRQRK*
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mRNA from alignment at P-wetherbeei_contig18198:804..950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18198.1.1 ID=mRNA_P-wetherbeei_contig18198.1.1|Name=mRNA_P-wetherbeei_contig18198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig18198:804..950+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCAGACGGTCGCCGAGTTGAACATCGAGCACTTTCGTAAATTACT
GCTGACAAGCCTCGACGATGAAAAGCGCGCGATGGTGAAGAAACTGCTAG
CGGCGGAAGAAGCCAAACTGGCAACCATCCTTCGGCAAAGAAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18198:804..950+

>mRNA_P-wetherbeei_contig18198.1.1 ID=mRNA_P-wetherbeei_contig18198.1.1|Name=mRNA_P-wetherbeei_contig18198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig18198:804..950+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCAGACGGTCGCCGAGTTGAACATCGAGCACTTTCGTAAATTACT
GCTGACAAGCCTCGACGATGAAAAGCGCGCGATGGTGAAGAAACTGCTAG
CGGCGGAAGAAGCCAAACTGGCAACCATCCTTCGGCAAAGAAAGTAG
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