mRNA_P-wetherbeei_contig18183.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18183.1.1
Unique NamemRNA_P-wetherbeei_contig18183.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A7Z9Q1T2_9BACT (HD domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9Q1T2_9BACT)

HSP 1 Score: 304 bits (779), Expect = 2.580e-94
Identity = 162/360 (45.00%), Postives = 229/360 (63.61%), Query Frame = 1
Query:  100 MSLVGDAARLREAFSHLIKNAIYFNVPQGHVYVRCEVK--GDTLSMSVTDTGPGVPPEERERVFAPFYQAQDLLTRHVEGVGLGLAITRHIVESHGGTIHLAGELGQGTQVCVNIPVSPP---EYSEGEFAPKSPNEFEALLSEHVDIQDGETLEYARELYNAYDRERIRRRHVEDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAF 1164
            + + GD + L +A   LI+NA+ FN P G V +   +K  G  +S+++TD GPG+   E +++F PFYQ  D+ TR VEG+G+GL++ R  +ESHGGT+ L   +G GT+  V +PV        +     P+ P E ++           E   YA+ELY   + ER+ RRH E++ R +E+TFVET+ +L+R +D R        +RV+  A  +AR +DP L ++ +F   LLL+DIGKIG+AES+L K+G LT +E    Q+H  +GA+LL SV  LRPA+  VR HHE+WDG GYPDGL GKEIPL ARI+AV DS+DAM  DRPYR+A++   A+  I + +G+ YDPEVV AF
Sbjct:  261 LEIEGDPSGLPDALLQLIENALIFNNPGGKVEITASLKNGGKFVSVAITDDGPGIENRELDKIFRPFYQVADVNTRTVEGLGIGLSLARRTIESHGGTLKLQSVVGLGTKAIVTLPVRSQLTIPLATTREVPQPPGEADSK----------ELKAYAQELYEYLEAERVSRRHAEEQKRVLEQTFVETLVSLIRMVDPRVSGGTFQGERVLNYARAVARHLDPTLLSRPEFLYGLLLYDIGKIGVAESVLSKSGMLTDQERLSAQAHAEIGAELLTSVGVLRPAIDAVRSHHEKWDGTGYPDGLKGKEIPLLARIIAVVDSFDAMTVDRPYRQAMSLERARSCIIEDAGVSYDPEVVEAF 610          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: UPI0019EDED84 (HD domain-containing protein n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019EDED84)

HSP 1 Score: 210 bits (535), Expect = 1.750e-59
Identity = 132/406 (32.51%), Postives = 208/406 (51.23%), Query Frame = 1
Query:    1 VDMRVLLSSTLRDYESLAQTKLVSLEFHPAEKEMSLVGDAARLREAFSHLIKNAIYFNVPQGHVYVRCEVKGDT-LSMSVTDTGPGVPPEERERVFAPFYQAQDLLTRHVEGVGLGLAITRHIVESHGGTIHLAGELGQ--GTQVCVNIPVSPPEYSEGEFAPK---------SPNEFEALLSEHVDIQDGETLEYARELYNAYDRERIRRRHVEDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGK--LTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDIY 1176
            +D+R L+   +   +    +K   LE   A+    L  D  ++ E    L+ NAI F  P+GH+ +    +    L + V+DTGPG+PPE   ++F PFYQ +D L R   G+GLGL + + + ++ G  + +  E G   GT   V +PVS       E             S  E EA+LS+       + L+Y  EL  A+          + +   ++  +   ++     +++RD +    + R+V  A  +   +     A +  + + LL DIG IGI++ +L K+    L+  E Q +QSH  +GA++LQ V  L P +  V HHHE WDG GYP GL GKEIP  +R++ V D+++AM+SDR YR  LAP  A +EI + +G Q+DPE+V  F  ++
Sbjct:   95 LDLRELVLGVVNVLKPSYTSKRQILEVAIADDLPPLYLDGGKMAEIVLQLLSNAIKFTPPEGHLRLLLRQEDPQWLQLIVSDTGPGIPPELEAQIFDPFYQREDHLIRENGGLGLGLTLVQRLCQAIGARLEIFPESGHYTGTNFVVRLPVSQASKDSPELQKALEQMHNLSASNAEKEAMLSK----LKAQLLKYTEELQQAFHSN-------QQKQHALDTIYPNILSGFAAALELRDPYTRGRSQRLVRYAEVLGEALKLDADAARQLEQACLLCDIGYIGISDEVLHKSDSESLSEAERQHIQSHARIGAEMLQHVKLLEPIVPLVLHHHENWDGSGYPSGLKGKEIPYLSRVVRVIDAFEAMLSDRSYRPRLAPETALNEICRHAGSQFDPEIVKLFTGLW 489          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A2N1UWT2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium HGW-Melainabacteria-1 TaxID=2013813 RepID=A0A2N1UWT2_9BACT)

HSP 1 Score: 204 bits (519), Expect = 5.740e-57
Identity = 114/363 (31.40%), Postives = 194/363 (53.44%), Query Frame = 1
Query:  115 DAARLREAFSHLIKNAIYFNVPQGHVYVRCEVKGDTLSMSVTDTGPGVPPEERERVFAPFYQAQDLLTRHVEGVGLGLAITRHIVESHGGTIHLAGELG--QGTQVCVNIPVSPPEYSEGEFAPKSPNEFEALLSEHVDIQ------DGETLEYARELYNAYDRERIRRRHVEDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKA-GKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDIY 1176
            D+++  E    L+ NAI F   +GH+ V   + GD L + V+D GPG+PP+ + R+F PFYQ +D L R   G+GLGL + + +  + G  + +  E G   GT   V +P+  P + +G    K+  + + L   + + +        + L Y  +L  AY          E +   ++  ++E M+     ++VRD      + R+ + A+ +A +       +K  Q + LL DIG IGI++ +L +   +L+ EE   + SH  + A++L+++    P +  + HHHE +DG GYPDGL G++IP  +R++ V D++DAM+SDR +R    P  A  EI + +G Q+DPE+V  F  ++
Sbjct:  162 DSSKFSEIVLQLLSNAIKFTPNKGHIRVLVMLDGDWLQLIVSDNGPGIPPDVQRRIFDPFYQQEDYLIREHGGLGLGLTLVQRLCHALGARLDVFPESGVYTGTNFLVRLPLQLPVFEQGPELKKALEKMQQLSLSNAEKEAQLNSLKSQLLHYTEDLQRAYQSN-------EQKQSALDSIYLEIMSGFATALEVRDPFTRGRSQRIASYASLLAEEARLSDTEQKWLQQACLLCDIGYIGISDDVLHRGHDQLSAEERAHIHSHPRIAAEMLKNIRIFDPVVPLILHHHENFDGTGYPDGLGGEKIPYLSRMMRVVDAFDAMLSDRAFRSRYLPDYALQEITRFAGSQFDPEIVKLFTRLW 517          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A7X9B985_9FIRM (HD-GYP domain-containing protein n=1 Tax=Tissierellia bacterium TaxID=2049431 RepID=A0A7X9B985_9FIRM)

HSP 1 Score: 188 bits (478), Expect = 1.510e-54
Identity = 89/184 (48.37%), Postives = 124/184 (67.39%), Query Frame = 1
Query:  622 EMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDI 1173
            EM   ++ T+ AL + ++ +D +   H +RV   A E+A   +    + ++ + + +LHDIGKIGI +S+L KA KLT EE+  +  H ++GAD++  VDFL+     V+HHHER+DGKGYPDGL G EIP+ A IL +ADSYDAM SDRPYRKAL P EA +E+ K SG Q+ PE+V  F+ I
Sbjct:   29 EMRNLYISTIQALNKTVEAKDPYTSGHANRVGEYAVELAEAFELPFTSIENIKTAAILHDIGKIGINDSILNKASKLTVEEYHEIMKHPSIGADIISKVDFLKDITIIVKHHHERYDGKGYPDGLKGDEIPIEASILMIADSYDAMTSDRPYRKALTPEEAVEELRKNSGTQFHPELVTKFISI 212          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A537VT41_9ACTN (HD domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537VT41_9ACTN)

HSP 1 Score: 190 bits (482), Expect = 3.230e-54
Identity = 97/210 (46.19%), Postives = 135/210 (64.29%), Query Frame = 1
Query:  544 LEYARELYNAYDRERIRRRHVEDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDI 1173
            L +AR+L   Y RER R   +ED   E+E +++ T+  L   ++ +D H  SH DR    A  +A ++ P L A +  +    LHDIGKIGI E +L K G LT EE  I+++H  +GA +L  V FLRPAL  V  HHE+WDG GYP GL  +EIPL ARI A+ D++DAM SDRPYR+AL   +A ++I + +G Q+DP+VV AF+++
Sbjct:   55 LSFARDLNEVYRRERARTAQLEDALHELEESYLATVKTLAFVVEAKDVHTRSHLDRAHDYAVALAGRVAPELAADQTLRYGFFLHDIGKIGIPERVLSKPGPLTEEEWAIMRTHPLLGAQILSPVKFLRPALPIVEAHHEKWDGTGYPRGLRYEEIPLGARIFALVDAFDAMTSDRPYRRALTFEQAIEQIARSAGSQFDPDVVRAFVEL 264          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A2M7GAJ3_9BACT (Uncharacterized protein n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7GAJ3_9BACT)

HSP 1 Score: 189 bits (481), Expect = 1.230e-51
Identity = 125/396 (31.57%), Postives = 205/396 (51.77%), Query Frame = 1
Query:    1 VDMRVLLSSTLRDYESLAQTKLVSLEFHPAEKEMSLVGDAARLREAFSHLIKNAIYFNVPQGHVYVRCEVKGDTLSMSVTDTGPGVPPEERERVFAPFYQAQDLLTRHVEGVGLGLAITRHIVESHGGTIHLAGELGQ--GTQVCVNIPVSPPEYSEGEFAPKSPNEFEALLSEHVDIQDG------ETLEYARELYNAYDRERIRRRHVEDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQL--SLLLHDIGKIGIAESLLQK--AGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEV 1152
            +D++ L+   +   +   Q K   LE    E    L+ D+ +L E    L+ NAI F    GH+ +        L+  V+D GPG+P   RE++F PF+Q +D L R   G+GLGL + + +    GG + L  E G+  G+   + IP   P   + +   +   + + L   + + ++       + LEY   L N   +  ++++       EME+ +VE +  L   ++ RD +    + R+   A  IA +++  LP K+   L  + LL DIG IGI +++LQK     L+  + + +++H  +GA +L  +      +  VR HHE WDG GYP+GL G+ IP  ARI+ +AD++DAM+SDR YR+   P    DEI+K SG Q+DP++
Sbjct:  101 IDVQELVCEVVNVLKPTFQAKKQVLEISIQEHLPPLITDSGKLFEVMVQLLSNAIKFTPQGGHIRIMVIGSEQMLTFIVSDNGPGIPASLREKIFNPFFQQEDHLIREHGGLGLGLTLVQRLCNILGGQLRLDVEEGKYTGSTFILEIPRINPVVQKNQEMQQMLADLKNLTRSNAEKEEQLMGMKKQLLEYTSAL-NLASQSNLQQKQ------EMEKMYVEMIQGLAFALETRDAYTRGRSHRIAGYAELIATELN--LPQKERDTLLKACLLCDIGYIGIPDTVLQKDQLQGLSEADIEQIKTHTRMGAQMLNHIQAFEEIVPLVRSHHENWDGSGYPEGLKGEAIPKLARIIHLADAFDAMLSDRAYRQRYQPEYVVDEIKKHSGTQFDPDL 487          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A7W0LPN9_9ACTN (HD domain-containing protein n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0LPN9_9ACTN)

HSP 1 Score: 181 bits (460), Expect = 2.220e-51
Identity = 90/208 (43.27%), Postives = 131/208 (62.98%), Query Frame = 1
Query:  550 YARELYNAYDRERIRRRHVEDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDI 1173
            YA +L   + +ER       +R  E+ R++V T+ AL   ++ RD     H +RV   + E+AR + P L A    +   LLHD+GK+ I +S+L K   LT EE  ++++H  +GA +L  ++FL  A A VRHHHERWDG GYPDGLAG++IP+ ARI AVAD++DA+ +DRPYR A     A++ I  ++G+Q+DP VV AF  +
Sbjct:   39 YASDLRETFKQER-------ERTHEVRRSYVATVRALTNAVEARDPDTGKHAERVAAYSLELARSVAPELVADPLSEFGFLLHDVGKVAIPDSVLHKPHPLTAEERALIETHTVIGAQILAGIEFLSDARAVVRHHHERWDGGGYPDGLAGEDIPIAARIFAVADTFDALTTDRPYRPAATLERAQEVIAGEAGLQFDPAVVAAFAKV 239          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A2N2M2B1_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-8 TaxID=2013731 RepID=A0A2N2M2B1_9CHLR)

HSP 1 Score: 185 bits (470), Expect = 3.530e-51
Identity = 90/189 (47.62%), Postives = 132/189 (69.84%), Query Frame = 1
Query:  610 DRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDIY 1176
            D N E+ R++ ET+ AL++ +D RD     H++RV  IA  IAR++       ++ Q   LLHD+GKIGI + +L+K GKLT EE  ++++H  VG ++L+ + FL P+L  V HHHE++DG GYP GL+GK IPL ARI A++D+YDAM +DRPYRKA  P +A +EI++ +  Q+DPE+V AFL+ +
Sbjct:  175 DINEELNRSYNETLHALVKALDTRDSETGGHSERVTQIALFIARQLKLDEKVIQEIQWGALLHDVGKIGIPDHILRKPGKLTDEEWIVMRTHPLVGYEMLKKIPFLAPSLDVVLHHHEKYDGTGYPSGLSGKAIPLAARIFAISDTYDAMTNDRPYRKAFYPEKALEEIQQCANSQFDPEIVNAFLNAF 363          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A2M7DTF8_9BACT (Two-component system response regulator n=3 Tax=unclassified Elusimicrobia TaxID=1797919 RepID=A0A2M7DTF8_9BACT)

HSP 1 Score: 182 bits (462), Expect = 1.200e-50
Identity = 92/185 (49.73%), Postives = 130/185 (70.27%), Query Frame = 1
Query:  619 REMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDI 1173
            R+ME+T+++T+ AL   I++RD + E+H++ V   A  IA  +       KD +LS LLHDIGKI I + +L K GKLT EE +I++ H  +G ++++ + FL+ AL ++ HHHE++DGKGYP  LAG  IPL ARI+ VADSY AMIS+RPYR AL+  EA  E+E+ SG Q+DPE+V  FL+I
Sbjct:  148 RDMEKTYLDTLKALANVIELRDMYTETHSETVSKNARLIAINMKLKRDEIKDVELSALLHDIGKIAIPDKILLKPGKLTPEEFEIMKKHSELGMNIIKHIGFLKDALLSILHHHEQFDGKGYPQKLAGDNIPLGARIVNVADSYHAMISERPYRGALSKEEALKELERCSGTQFDPEIVQVFLNI 332          
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Match: A0A2N2MWX3_9CHLR (HD-GYP domain-containing protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-4 TaxID=2013727 RepID=A0A2N2MWX3_9CHLR)

HSP 1 Score: 183 bits (465), Expect = 1.470e-50
Identity = 90/186 (48.39%), Postives = 128/186 (68.82%), Query Frame = 1
Query:  610 DRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPLLPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADLLQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDAMISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFL 1167
            D + E+ +++ ET+ AL++ +D RD     H++RV  IA  IA++++      +      LLHD+GKIGI +++L+K GKLT EE +I++SH   G ++L+ + FL PAL  V HHHER+DG GYP GLAGK+IPL ARI  +AD++DAM +DRPYRKA A   A DEI+K +  Q+DPE+V  FL
Sbjct:  175 DISEELNQSYNETLHALVKALDTRDNETGGHSERVTLIALSIAQQMNLDEKQIQQIHWGALLHDVGKIGIPDNILRKPGKLTEEEWKIMRSHPQTGYEMLKGIPFLAPALDVVLHHHERFDGSGYPSGLAGKDIPLSARIFTIADTFDAMTNDRPYRKAFALEIALDEIQKCANTQFDPEIVNVFL 360          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9Q1T2_9BACT2.580e-9445.00HD domain-containing protein n=1 Tax=Phycisphaeral... [more]
UPI0019EDED841.750e-5932.51HD domain-containing protein n=1 Tax=Candidatus Se... [more]
A0A2N1UWT2_9BACT5.740e-5731.40Uncharacterized protein n=1 Tax=Candidatus Melaina... [more]
A0A7X9B985_9FIRM1.510e-5448.37HD-GYP domain-containing protein n=1 Tax=Tissierel... [more]
A0A537VT41_9ACTN3.230e-5446.19HD domain-containing protein (Fragment) n=1 Tax=Ac... [more]
A0A2M7GAJ3_9BACT1.230e-5131.57Uncharacterized protein n=1 Tax=bacterium (Candida... [more]
A0A7W0LPN9_9ACTN2.220e-5143.27HD domain-containing protein n=1 Tax=Thermoleophil... [more]
A0A2N2M2B1_9CHLR3.530e-5147.62Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2M7DTF8_9BACT1.200e-5049.73Two-component system response regulator n=3 Tax=un... [more]
A0A2N2MWX3_9CHLR1.470e-5048.39HD-GYP domain-containing protein n=1 Tax=Chlorofle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18183contigP-wetherbeei_contig18183:197..1372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121289.JHVL01000017_gene731
PFAMsDUF3369,GAF_2,HAMP,HD,HD_5,Reg_prop,Response_reg,Y_Y_Y
Model size1176
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.04e-48
EggNOG OGsCOG2206@1|root,COG2206@2|Bacteria,1UZN2@1239|Firmicutes,25EWN@186801|Clostridia,36USS@31979|Clostridiaceae
DescriptionHD domain
Cds size1170
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.38285-UTR-P-wetherbeei_contig18183:196..2021683186138.38285-UTR-P-wetherbeei_contig18183:196..202Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18183 197..202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.397351-CDS-P-wetherbeei_contig18183:202..13721683186138.397351-CDS-P-wetherbeei_contig18183:202..1372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18183 203..1372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18183.1.1prot_P-wetherbeei_contig18183.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18183 203..1372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18183.1.1

>prot_P-wetherbeei_contig18183.1.1 ID=prot_P-wetherbeei_contig18183.1.1|Name=mRNA_P-wetherbeei_contig18183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=390bp
MRVLLSSTLRDYESLAQTKLVSLEFHPAEKEMSLVGDAARLREAFSHLIK
NAIYFNVPQGHVYVRCEVKGDTLSMSVTDTGPGVPPEERERVFAPFYQAQ
DLLTRHVEGVGLGLAITRHIVESHGGTIHLAGELGQGTQVCVNIPVSPPE
YSEGEFAPKSPNEFEALLSEHVDIQDGETLEYARELYNAYDRERIRRRHV
EDRNREMERTFVETMAALMRQIDVRDKHEESHNDRVVTIATEIARKIDPL
LPAKKDFQLSLLLHDIGKIGIAESLLQKAGKLTREEHQILQSHVNVGADL
LQSVDFLRPALATVRHHHERWDGKGYPDGLAGKEIPLWARILAVADSYDA
MISDRPYRKALAPHEAKDEIEKKSGIQYDPEVVVAFLDIY
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mRNA from alignment at P-wetherbeei_contig18183:197..1372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18183.1.1 ID=mRNA_P-wetherbeei_contig18183.1.1|Name=mRNA_P-wetherbeei_contig18183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1176bp|location=Sequence derived from alignment at P-wetherbeei_contig18183:197..1372+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGACATGCGCGTCCTCCTCAGCTCCACCTTGCGCGACTACGAATCCCT CGCCCAGACCAAGCTCGTCAGCCTCGAGTTCCATCCCGCCGAAAAGGAAA TGTCCCTCGTCGGCGACGCCGCCCGCCTGCGCGAAGCCTTCTCCCACCTC ATCAAAAACGCCATCTACTTCAATGTCCCCCAGGGCCACGTCTACGTGCG CTGCGAGGTCAAGGGCGACACCCTCAGCATGTCCGTCACCGACACGGGCC CCGGCGTCCCGCCCGAAGAGCGCGAGCGCGTCTTCGCACCCTTCTACCAG GCCCAGGATCTCCTGACTCGGCACGTCGAGGGCGTCGGTCTCGGACTGGC CATCACTCGCCACATCGTCGAATCCCACGGCGGCACCATCCACCTCGCCG GCGAGCTCGGCCAGGGCACCCAAGTCTGCGTCAACATCCCCGTCTCTCCA CCCGAATACAGCGAGGGCGAATTTGCTCCCAAATCCCCCAACGAATTCGA AGCACTCCTCTCCGAGCACGTGGACATCCAGGATGGCGAGACCCTCGAAT ACGCCCGCGAACTCTACAACGCCTACGACCGCGAGCGCATTCGCCGCCGC CACGTCGAAGACCGCAACCGGGAAATGGAGCGCACCTTCGTCGAGACGAT GGCGGCTCTGATGCGCCAGATCGACGTCCGCGACAAGCACGAGGAGTCCC ACAACGACCGCGTCGTCACCATAGCAACCGAAATCGCCCGCAAAATCGAT CCGCTCCTGCCCGCCAAAAAGGACTTCCAGCTCAGCCTGCTTCTCCACGA CATCGGCAAAATCGGCATCGCCGAGAGCCTCCTCCAGAAAGCCGGCAAGC TCACCCGCGAAGAGCATCAGATCCTCCAGTCGCACGTCAATGTGGGCGCC GATCTCCTCCAGTCGGTGGACTTCCTGCGGCCCGCCCTGGCCACCGTGCG CCACCACCACGAGCGCTGGGACGGCAAGGGCTACCCCGACGGCCTGGCCG GCAAAGAGATCCCCCTCTGGGCTCGCATTCTGGCCGTCGCAGATTCCTAT GACGCGATGATCTCCGACCGCCCCTACCGTAAGGCCCTGGCTCCTCACGA GGCCAAGGACGAAATCGAGAAAAAATCCGGCATTCAGTATGACCCTGAAG TCGTCGTGGCGTTCCTCGACATCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18183:197..1372+

>mRNA_P-wetherbeei_contig18183.1.1 ID=mRNA_P-wetherbeei_contig18183.1.1|Name=mRNA_P-wetherbeei_contig18183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig18183:197..1372+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTCCTCCTCAGCTCCACCTTGCGCGACTACGAATCCCTCGCCCA
GACCAAGCTCGTCAGCCTCGAGTTCCATCCCGCCGAAAAGGAAATGTCCC
TCGTCGGCGACGCCGCCCGCCTGCGCGAAGCCTTCTCCCACCTCATCAAA
AACGCCATCTACTTCAATGTCCCCCAGGGCCACGTCTACGTGCGCTGCGA
GGTCAAGGGCGACACCCTCAGCATGTCCGTCACCGACACGGGCCCCGGCG
TCCCGCCCGAAGAGCGCGAGCGCGTCTTCGCACCCTTCTACCAGGCCCAG
GATCTCCTGACTCGGCACGTCGAGGGCGTCGGTCTCGGACTGGCCATCAC
TCGCCACATCGTCGAATCCCACGGCGGCACCATCCACCTCGCCGGCGAGC
TCGGCCAGGGCACCCAAGTCTGCGTCAACATCCCCGTCTCTCCACCCGAA
TACAGCGAGGGCGAATTTGCTCCCAAATCCCCCAACGAATTCGAAGCACT
CCTCTCCGAGCACGTGGACATCCAGGATGGCGAGACCCTCGAATACGCCC
GCGAACTCTACAACGCCTACGACCGCGAGCGCATTCGCCGCCGCCACGTC
GAAGACCGCAACCGGGAAATGGAGCGCACCTTCGTCGAGACGATGGCGGC
TCTGATGCGCCAGATCGACGTCCGCGACAAGCACGAGGAGTCCCACAACG
ACCGCGTCGTCACCATAGCAACCGAAATCGCCCGCAAAATCGATCCGCTC
CTGCCCGCCAAAAAGGACTTCCAGCTCAGCCTGCTTCTCCACGACATCGG
CAAAATCGGCATCGCCGAGAGCCTCCTCCAGAAAGCCGGCAAGCTCACCC
GCGAAGAGCATCAGATCCTCCAGTCGCACGTCAATGTGGGCGCCGATCTC
CTCCAGTCGGTGGACTTCCTGCGGCCCGCCCTGGCCACCGTGCGCCACCA
CCACGAGCGCTGGGACGGCAAGGGCTACCCCGACGGCCTGGCCGGCAAAG
AGATCCCCCTCTGGGCTCGCATTCTGGCCGTCGCAGATTCCTATGACGCG
ATGATCTCCGACCGCCCCTACCGTAAGGCCCTGGCTCCTCACGAGGCCAA
GGACGAAATCGAGAAAAAATCCGGCATTCAGTATGACCCTGAAGTCGTCG
TGGCGTTCCTCGACATCTAC
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