mRNA_P-wetherbeei_contig18159.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18159.1.1
Unique NamemRNA_P-wetherbeei_contig18159.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18159contigP-wetherbeei_contig18159:6..1344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1094
Hectar predicted targeting categoryother localisation
Exons2
Cds size1092
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.6305647-CDS-P-wetherbeei_contig18159:6..3511683186137.6305647-CDS-P-wetherbeei_contig18159:6..351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18159 7..351 -
1683186137.6392045-CDS-P-wetherbeei_contig18159:597..13441683186137.6392045-CDS-P-wetherbeei_contig18159:597..1344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18159 598..1344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18159.1.1prot_P-wetherbeei_contig18159.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18159 7..1344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18159.1.1

>prot_P-wetherbeei_contig18159.1.1 ID=prot_P-wetherbeei_contig18159.1.1|Name=mRNA_P-wetherbeei_contig18159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=364bp
GGVNGAGPAKPSGTDGRPVAPADAAAASAQASSKAAGAAPLSAPGQSPAP
AAAKAQADGAKPPPSSAAATTPPRPNASATAGGVVTPGSAGKGGSFKFNP
NAKPFSFNPTAKEFKPMGPPMPSPMPPPMPPPSQMAMAIGHSPLRHGMPM
GGYDGSGGMGPGPGQQMLDDGSGAGGMGMPMGVMMPPMGVGGGPPGGVGV
GVPQQMGGMGGQQMQQHGGPGRPGPVQGFMPPQVYQRGPGPQGMGQPQQM
YMPQTAMRMMNPQQVLMGQGGMPVMPHPHGGVFQAYPGVGVGGPGVGVPM
QMGLGGQGMMPQQPGYGYSPQRGPVQGMSIGAGGQLPGMPMGGMAMPDGR
GGGGVGPTHDQQPQ
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mRNA from alignment at P-wetherbeei_contig18159:6..1344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18159.1.1 ID=mRNA_P-wetherbeei_contig18159.1.1|Name=mRNA_P-wetherbeei_contig18159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-wetherbeei_contig18159:6..1344- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGTGAATGGCGCAGGCCCGGCGAAGCCCAGCGGCACGGACGGCAG
GCCAGTGGCGCCGGCAGACGCCGCCGCGGCGTCCGCTCAGGCGAGCAGCA
AAGCGGCGGGGGCCGCGCCGCTTTCGGCGCCTGGCCAGAGCCCGGCGCCG
GCGGCCGCCAAAGCACAGGCGGATGGGGCCAAGCCGCCGCCCTCGTCCGC
GGCCGCTACCACGCCGCCGCGTCCGAACGCATCGGCGACGGCCGGCGGCG
TGGTGACGCCGGGGTCGGCGGGAAAGGGCGGCTCTTTCAAGTTCAACCCC
AACGCCAAGCCATTCTCGTTTAACCCGACGGCGAAGGAATTTAAGCCGAT
GGGGCCGCCAATGCCGTCGCCGATGCCGCCGCCGATGCCGCCGCCGAGCC
AGATGGCCATGGCGATAGGGCACAGCCCGTTGCGGCATGGGATGCCAATG
GGGGGCTACGATGGCAGCGGTGGCATGGGGCCGGGGCCGGGCCAGCAAAT
GCTCGACGATGGCAGCGGCGCCGGCGGCATGGGCATGCCGATGGGGGTCA
TGATGCCGCCGATGGGTGTCGGGGGCGGGCCACCGGGCGGCGTCGGCGTC
GGTGTGCCTCAGCAGATGGGCGGCATGGGCGGCCAGCAGATGCAGCAGCA
CGGCGGGCCTGGCCGTCCGGGGCCCGTGCAGGGATTCATGCCGCCGCAGG
TCTACCAGAGGGGCCCCGGGCCGCAGGGCATGGGTCAGCCGCAGCAGGTA
AGAGGCATGCTTCGTTGTATTTTACGCTTGTTCTTCATTTTAACGGAAGC
GTGGTACGTTTCCTACGACTTTCTCCCCGACGAATCATTTGCCTGATAAT
GGTCTAGTGCTCTGTCGTTCTTTCTCGTTCTTATTGCTATCACAAAATTC
TCGCGTTCGAACCTCTTTTCCCTCAGAGAGGTTCCCAATATCTCCTCATT
CTCACGCCCATCTTCCTCCTTTCCTTTCTCCCCTTCGTTGCAGATGTATA
TGCCCCAGACAGCGATGCGGATGATGAACCCGCAGCAGGTGCTCATGGGG
CAGGGCGGCATGCCGGTCATGCCACACCCGCACGGCGGCGTCTTCCAGGC
TTATCCGGGCGTCGGTGTCGGCGGGCCCGGCGTCGGCGTGCCCATGCAGA
TGGGACTTGGCGGCCAGGGCATGATGCCGCAGCAGCCCGGCTACGGCTAC
AGCCCGCAGCGCGGCCCCGTGCAGGGGATGTCGATTGGTGCCGGCGGGCA
GTTGCCGGGGATGCCGATGGGCGGCATGGCCATGCCGGACGGCCGGGGAG
GCGGCGGCGTCGGCCCGACGCACGACCAGCAGCCGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18159:6..1344-

>mRNA_P-wetherbeei_contig18159.1.1 ID=mRNA_P-wetherbeei_contig18159.1.1|Name=mRNA_P-wetherbeei_contig18159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig18159:6..1344- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGTGAATGGCGCAGGCCCGGCGAAGCCCAGCGGCACGGACGGCAG
GCCAGTGGCGCCGGCAGACGCCGCCGCGGCGTCCGCTCAGGCGAGCAGCA
AAGCGGCGGGGGCCGCGCCGCTTTCGGCGCCTGGCCAGAGCCCGGCGCCG
GCGGCCGCCAAAGCACAGGCGGATGGGGCCAAGCCGCCGCCCTCGTCCGC
GGCCGCTACCACGCCGCCGCGTCCGAACGCATCGGCGACGGCCGGCGGCG
TGGTGACGCCGGGGTCGGCGGGAAAGGGCGGCTCTTTCAAGTTCAACCCC
AACGCCAAGCCATTCTCGTTTAACCCGACGGCGAAGGAATTTAAGCCGAT
GGGGCCGCCAATGCCGTCGCCGATGCCGCCGCCGATGCCGCCGCCGAGCC
AGATGGCCATGGCGATAGGGCACAGCCCGTTGCGGCATGGGATGCCAATG
GGGGGCTACGATGGCAGCGGTGGCATGGGGCCGGGGCCGGGCCAGCAAAT
GCTCGACGATGGCAGCGGCGCCGGCGGCATGGGCATGCCGATGGGGGTCA
TGATGCCGCCGATGGGTGTCGGGGGCGGGCCACCGGGCGGCGTCGGCGTC
GGTGTGCCTCAGCAGATGGGCGGCATGGGCGGCCAGCAGATGCAGCAGCA
CGGCGGGCCTGGCCGTCCGGGGCCCGTGCAGGGATTCATGCCGCCGCAGG
TCTACCAGAGGGGCCCCGGGCCGCAGGGCATGGGTCAGCCGCAGCAGATG
TATATGCCCCAGACAGCGATGCGGATGATGAACCCGCAGCAGGTGCTCAT
GGGGCAGGGCGGCATGCCGGTCATGCCACACCCGCACGGCGGCGTCTTCC
AGGCTTATCCGGGCGTCGGTGTCGGCGGGCCCGGCGTCGGCGTGCCCATG
CAGATGGGACTTGGCGGCCAGGGCATGATGCCGCAGCAGCCCGGCTACGG
CTACAGCCCGCAGCGCGGCCCCGTGCAGGGGATGTCGATTGGTGCCGGCG
GGCAGTTGCCGGGGATGCCGATGGGCGGCATGGCCATGCCGGACGGCCGG
GGAGGCGGCGGCGTCGGCCCGACGCACGACCAGCAGCCGCAG
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