mRNA_P-wetherbeei_contig18093.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18093.1.1
Unique NamemRNA_P-wetherbeei_contig18093.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18093.1.1 vs. uniprot
Match: A0A7X9AF38_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AF38_9BURK)

HSP 1 Score: 168 bits (426), Expect = 3.020e-49
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1 
Query:   16 VLLLAAPATAQTPVEFLYARARGLNASMRDSTCDIDLQIEAHMGAIPYKPRLLGKYYFKRADKHKLALENAPGYIQKYGSVFGFHLPQLEKYNAKIAGAFDIGGRQVKRIVLVPKVRKSDIERIELYVDPDRGTVPKFDTFY-TQGHLYVEIDFTQEQNYWVYSKMTADFSFP--NINARASASYANYQFNQNLSDSLF 603
            VL +  PA A   VE ++AR R +N  + D   DID+ ++A +  +PY P + G YY KR DKHKL LE AP Y++KY ++FG++LP LEK+N+++A   D+ G+   RI + PK    DI+ +E++V+ +  ++P+  T Y   G L V + + Q + + V+ +MTA+F FP  +++A A+A+YANY+FNQ LSD  F
Sbjct:   17 VLAIPTPARADAQVEAIFARVRQINPGLNDYQADIDISLKAKVAFLPYNPTMSGTYYHKRPDKHKLVLEKAPSYVKKYPNIFGWNLPVLEKFNSRVAEQTDLAGQPTWRITMTPKQGMGDIQMVEIWVNRNDYSIPRQVTHYKNNGLLGVNVAYRQTEGFLVFDRMTAEFQFPAVSVSATATANYANYRFNQGLSDEFF 215
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9AF38_9BURK3.020e-4941.71Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18093contigP-wetherbeei_contig18093:246..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size603
Hectar predicted targeting categorysignal peptide
Exons1
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.085429-CDS-P-wetherbeei_contig18093:245..8481683186136.085429-CDS-P-wetherbeei_contig18093:245..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18093 246..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18093.1.1prot_P-wetherbeei_contig18093.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18093 246..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18093.1.1

>prot_P-wetherbeei_contig18093.1.1 ID=prot_P-wetherbeei_contig18093.1.1|Name=mRNA_P-wetherbeei_contig18093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
FLLLFVLLLAAPATAQTPVEFLYARARGLNASMRDSTCDIDLQIEAHMGA
IPYKPRLLGKYYFKRADKHKLALENAPGYIQKYGSVFGFHLPQLEKYNAK
IAGAFDIGGRQVKRIVLVPKVRKSDIERIELYVDPDRGTVPKFDTFYTQG
HLYVEIDFTQEQNYWVYSKMTADFSFPNINARASASYANYQFNQNLSDSL
F
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mRNA from alignment at P-wetherbeei_contig18093:246..848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18093.1.1 ID=mRNA_P-wetherbeei_contig18093.1.1|Name=mRNA_P-wetherbeei_contig18093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig18093:246..848+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTTGCTTCTTTTTGTCCTCTTGCTGGCGGCTCCGGCGACCGCTCAGAC
TCCCGTTGAGTTTCTGTACGCTCGAGCCCGGGGCCTCAACGCTTCGATGC
GAGATTCGACCTGCGATATCGATCTGCAAATCGAGGCCCACATGGGCGCC
ATTCCCTACAAGCCGCGGCTTCTCGGGAAATACTACTTCAAGCGTGCCGA
TAAGCATAAGCTGGCCCTGGAAAATGCGCCGGGCTACATCCAGAAATACG
GCAGCGTATTTGGCTTCCATCTCCCACAACTGGAGAAGTACAACGCCAAG
ATCGCCGGAGCCTTCGATATTGGCGGACGTCAGGTCAAGCGCATCGTTCT
GGTGCCCAAAGTTCGCAAAAGCGATATCGAGCGCATCGAGCTTTACGTAG
ACCCCGACCGCGGCACCGTGCCCAAATTCGATACCTTTTATACGCAGGGT
CATCTCTACGTAGAAATCGACTTCACCCAGGAGCAGAATTACTGGGTCTA
CAGCAAGATGACGGCCGACTTCTCGTTTCCTAACATTAATGCCAGAGCCT
CGGCCAGCTATGCCAACTATCAGTTCAATCAGAACCTATCCGACAGTCTC
TTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18093:246..848+

>mRNA_P-wetherbeei_contig18093.1.1 ID=mRNA_P-wetherbeei_contig18093.1.1|Name=mRNA_P-wetherbeei_contig18093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig18093:246..848+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTTGCTTCTTTTTGTCCTCTTGCTGGCGGCTCCGGCGACCGCTCAGAC
TCCCGTTGAGTTTCTGTACGCTCGAGCCCGGGGCCTCAACGCTTCGATGC
GAGATTCGACCTGCGATATCGATCTGCAAATCGAGGCCCACATGGGCGCC
ATTCCCTACAAGCCGCGGCTTCTCGGGAAATACTACTTCAAGCGTGCCGA
TAAGCATAAGCTGGCCCTGGAAAATGCGCCGGGCTACATCCAGAAATACG
GCAGCGTATTTGGCTTCCATCTCCCACAACTGGAGAAGTACAACGCCAAG
ATCGCCGGAGCCTTCGATATTGGCGGACGTCAGGTCAAGCGCATCGTTCT
GGTGCCCAAAGTTCGCAAAAGCGATATCGAGCGCATCGAGCTTTACGTAG
ACCCCGACCGCGGCACCGTGCCCAAATTCGATACCTTTTATACGCAGGGT
CATCTCTACGTAGAAATCGACTTCACCCAGGAGCAGAATTACTGGGTCTA
CAGCAAGATGACGGCCGACTTCTCGTTTCCTAACATTAATGCCAGAGCCT
CGGCCAGCTATGCCAACTATCAGTTCAATCAGAACCTATCCGACAGTCTC
TTT
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