mRNA_P-wetherbeei_contig18087.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18087.2.1
Unique NamemRNA_P-wetherbeei_contig18087.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A537BRE5_9PROT (50S ribosomal protein L9 n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BRE5_9PROT)

HSP 1 Score: 225 bits (574), Expect = 1.550e-73
Identity = 117/149 (78.52%), Postives = 129/149 (86.58%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES 447
            MQVILMEKV NLG LGDVV+VKDGYARN+LIP GKAKRAT+ NLK FE +RAELEKAQAEQLA+AQERGT+L+G  +QI QKAGVDGRLFGSVTNYDIVE L KQG EVERAQ+RMP GP+KQ+GD  I +ALHTDV   ITVSV GES
Sbjct:    1 MQVILMEKVANLGNLGDVVKVKDGYARNYLIPHGKAKRATQENLKAFESRRAELEKAQAEQLAKAQERGTKLDGFKLQIAQKAGVDGRLFGSVTNYDIVEGLQKQGHEVERAQIRMPQGPLKQVGDYPIQIALHTDVTVTITVSVQGES 149
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A0S8AZ93_9PROT (50S ribosomal protein L9 n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AZ93_9PROT)

HSP 1 Score: 223 bits (569), Expect = 8.950e-73
Identity = 116/149 (77.85%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES 447
            MQVILME+V NLG LGDVV+VKDG+ARNFLIP GKAKRAT  NL VFE +RAELE+ QA+ L  AQ R T+LEGLM+QITQKAGVDGRLFGSVTN+DIVEAL KQG EVERAQVRMP GP+KQ+GD  I++ALHTDV+A ITVSVLGES
Sbjct:    1 MQVILMERVANLGNLGDVVKVKDGFARNFLIPHGKAKRATPENLAVFESRRAELERTQADALGAAQARATQLEGLMIQITQKAGVDGRLFGSVTNFDIVEALAKQGIEVERAQVRMPQGPLKQVGDFPISIALHTDVIATITVSVLGES 149
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A536SHE2_9PROT (50S ribosomal protein L9 n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SHE2_9PROT)

HSP 1 Score: 221 bits (563), Expect = 7.340e-72
Identity = 114/148 (77.03%), Postives = 127/148 (85.81%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGE 444
            MQVILMEKV NLG LGDVVRVKDG+ARN+LIP GKAKRATE NLK FE +RA+LEKAQA+ L +AQER  +LEGL +QITQKAG DGRLFGSVTNYDIVEAL KQG EVERA +RMP GP+KQ+GD  I +ALHTDV A +TVSVLGE
Sbjct:    1 MQVILMEKVANLGELGDVVRVKDGFARNYLIPHGKAKRATEANLKAFESRRADLEKAQADSLGKAQERAVKLEGLTIQITQKAGPDGRLFGSVTNYDIVEALQKQGHEVERANIRMPQGPLKQVGDVPIEIALHTDVTATVTVSVLGE 148
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A521YWE6_9PROT (50S ribosomal protein L9 n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YWE6_9PROT)

HSP 1 Score: 221 bits (562), Expect = 1.040e-71
Identity = 114/148 (77.03%), Postives = 128/148 (86.49%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGE 444
            MQVILMEKV NLG LGDVV+VKDGYARNFLIP GKAKRATE NLK FE +RAELEKAQ E LA+AQERG +LEG+ +QI QKAGVDGRLFGSVTNYDI EAL KQG EVER+Q+RMP GP+KQ+G+  I +ALHTDV A ITV+V+GE
Sbjct:    1 MQVILMEKVANLGNLGDVVKVKDGYARNFLIPHGKAKRATEDNLKAFESRRAELEKAQNEALAKAQERGAKLEGVKIQIAQKAGVDGRLFGSVTNYDICEALEKQGHEVERSQIRMPQGPLKQVGEYPIQIALHTDVTATITVAVIGE 148
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A1F4F3H2_9PROT (50S ribosomal protein L9 n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F3H2_9PROT)

HSP 1 Score: 219 bits (559), Expect = 2.990e-71
Identity = 113/149 (75.84%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES 447
            M+VILMEK+ NLG LGDVV+VKDG+ARNFLIPQGKAKRATE NLK FE +R+ELE+ QAE LA+A+ERG +L+GL +QITQKAGVDGRLFGSVTNYDIVEAL K G +VER+ VRMP GP+KQ+GDT I +ALHTDV   ITVSVLGES
Sbjct:    1 MEVILMEKLANLGDLGDVVKVKDGFARNFLIPQGKAKRATEANLKEFEARRSELERTQAEALAEARERGAKLDGLTIQITQKAGVDGRLFGSVTNYDIVEALEKLGHDVERSMVRMPMGPLKQVGDTPIEIALHTDVTTTITVSVLGES 149
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A536XTZ6_9PROT (50S ribosomal protein L9 n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XTZ6_9PROT)

HSP 1 Score: 219 bits (557), Expect = 6.020e-71
Identity = 115/148 (77.70%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGE 444
            MQVILMEKV NLG LGDVV+VKDG+ARN+LIPQGKAKRATE NLK FE +R +LEKAQAE L +AQERG +LEGL +QITQKAG DGRLFGSVTNYDIVEAL  QG EVERA VRMP GP+KQ+GD  I +ALHTDV   ITVSVLGE
Sbjct:    1 MQVILMEKVANLGELGDVVKVKDGFARNYLIPQGKAKRATEANLKAFESRRVDLEKAQAETLGKAQERGAKLEGLTLQITQKAGPDGRLFGSVTNYDIVEALKTQGHEVERANVRMPQGPLKQVGDFPIQIALHTDVTVTITVSVLGE 148
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A536YIA8_9PROT (50S ribosomal protein L9 n=8 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YIA8_9PROT)

HSP 1 Score: 216 bits (550), Expect = 7.740e-70
Identity = 111/149 (74.50%), Postives = 132/149 (88.59%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES 447
            MQVIL+EKVVNLGGLGDVV+VKDGYARN+L+PQGKAKRAT  +L  FE+KRAELE+AQ++ LA AQE+G +LEGLMVQITQKAGVDG LFGSVTN+DIVEAL  QGFEVER+ +R+P GP+K +GD +I VALHTDVV +I +SVLGE+
Sbjct:    1 MQVILLEKVVNLGGLGDVVKVKDGYARNYLLPQGKAKRATPESLAEFEKKRAELEQAQSQTLAAAQEKGAKLEGLMVQITQKAGVDGHLFGSVTNFDIVEALKGQGFEVERSMIRLPQGPLKTVGDHSIAVALHTDVVVHIKISVLGET 149
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A1F3YQV0_9PROT (50S ribosomal protein L9 n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YQV0_9PROT)

HSP 1 Score: 216 bits (549), Expect = 9.960e-70
Identity = 110/149 (73.83%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES 447
            MQVILMEK+ NLG LGDVV+VKDGYARN+LIP GKAKRAT+ NLK FE +RAELEKAQA  LAQA+ERG +L+GL ++I QKAGVDGRLFGSVTNYDIVEAL  QG E+ER+QVRMPAGP+KQ+G+  + +ALHTDVV  ITV+V+GE+
Sbjct:    1 MQVILMEKLANLGELGDVVKVKDGYARNYLIPHGKAKRATDENLKAFESRRAELEKAQAAALAQAKERGAKLDGLTLKIAQKAGVDGRLFGSVTNYDIVEALKAQGMEIERSQVRMPAGPLKQVGEFPLQIALHTDVVVTITVAVIGET 149
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A177R2Q5_9PROT (50S ribosomal protein L9 n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177R2Q5_9PROT)

HSP 1 Score: 215 bits (548), Expect = 1.410e-69
Identity = 113/148 (76.35%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGE 444
            MQVILMEKV NLG LGDVV+VKDGYARNFLIP+GKAKRAT  NLK FE +RAELEKAQA+ LA+AQERGT+LE L VQITQKAG DGRLFGSVTNYDIVE L KQG EVERA +RMP GP+KQ+G+  + +ALHTDV   + VSVLGE
Sbjct:    1 MQVILMEKVSNLGELGDVVKVKDGYARNFLIPEGKAKRATPENLKAFESRRAELEKAQADVLAKAQERGTKLESLTVQITQKAGPDGRLFGSVTNYDIVEELKKQGHEVERAMIRMPQGPLKQVGEYPLQIALHTDVTVTVKVSVLGE 148
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BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Match: A0A1F4FE06_9PROT (50S ribosomal protein L9 n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FE06_9PROT)

HSP 1 Score: 214 bits (545), Expect = 4.050e-69
Identity = 113/149 (75.84%), Postives = 128/149 (85.91%), Query Frame = 1 
Query:    1 MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEKRAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVEALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES 447
            MQVILMEK+VNLG LGDVV+VKDG+ARN+LIPQGKAKRATE NLK FE +R ELE+AQA+ LAQA+ERG +L+GL +QITQKAGVDGRLFGSVTN DIV+ L  QG EVERA VRMP GP+KQ+GD  I +ALH DVV  ITVSVLGES
Sbjct:    1 MQVILMEKLVNLGELGDVVKVKDGFARNYLIPQGKAKRATEANLKAFEARRTELERAQAQTLAQARERGAKLDGLTIQITQKAGVDGRLFGSVTNIDIVDTLLGQGHEVERAMVRMPDGPLKQVGDHPIQIALHGDVVVTITVSVLGES 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18087.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537BRE5_9PROT1.550e-7378.5250S ribosomal protein L9 n=5 Tax=Betaproteobacteri... [more]
A0A0S8AZ93_9PROT8.950e-7377.8550S ribosomal protein L9 n=1 Tax=Betaproteobacteri... [more]
A0A536SHE2_9PROT7.340e-7277.0350S ribosomal protein L9 n=1 Tax=Betaproteobacteri... [more]
A0A521YWE6_9PROT1.040e-7177.0350S ribosomal protein L9 n=2 Tax=unclassified Beta... [more]
A0A1F4F3H2_9PROT2.990e-7175.8450S ribosomal protein L9 n=1 Tax=Betaproteobacteri... [more]
A0A536XTZ6_9PROT6.020e-7177.7050S ribosomal protein L9 n=2 Tax=Betaproteobacteri... [more]
A0A536YIA8_9PROT7.740e-7074.5050S ribosomal protein L9 n=8 Tax=Betaproteobacteri... [more]
A0A1F3YQV0_9PROT9.960e-7073.8350S ribosomal protein L9 n=1 Tax=Betaproteobacteri... [more]
A0A177R2Q5_9PROT1.410e-6976.3550S ribosomal protein L9 n=1 Tax=Betaproteobacteri... [more]
A0A1F4FE06_9PROT4.050e-6975.8450S ribosomal protein L9 n=2 Tax=unclassified Beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18087contigP-wetherbeei_contig18087:223..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog62928.azo0721
Preferred namerplI
PFAMsRibosomal_L9_C,Ribosomal_L9_N
Model size450
Max annot lvl206389|Rhodocyclales
KEGG koko:K02939
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-69
EggNOG OGsCOG0359@1|root,COG0359@2|Bacteria,1RD0R@1224|Proteobacteria,2VR40@28216|Betaproteobacteria,2KWBY@206389|Rhodocyclales
Descriptionbinds to the 23S rRNA
Cds size450
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.9572966-CDS-P-wetherbeei_contig18087:222..6721683186135.9572966-CDS-P-wetherbeei_contig18087:222..672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18087 223..672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18087.2.1prot_P-wetherbeei_contig18087.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18087 223..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18087.2.1

>prot_P-wetherbeei_contig18087.2.1 ID=prot_P-wetherbeei_contig18087.2.1|Name=mRNA_P-wetherbeei_contig18087.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MQVILMEKVVNLGGLGDVVRVKDGYARNFLIPQGKAKRATETNLKVFEEK
RAELEKAQAEQLAQAQERGTRLEGLMVQITQKAGVDGRLFGSVTNYDIVE
ALGKQGFEVERAQVRMPAGPIKQIGDTAITVALHTDVVANITVSVLGES*
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mRNA from alignment at P-wetherbeei_contig18087:223..672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18087.2.1 ID=mRNA_P-wetherbeei_contig18087.2.1|Name=mRNA_P-wetherbeei_contig18087.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig18087:223..672+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGTCATACTGATGGAGAAAGTCGTCAACCTCGGCGGCCTCGGCGA
CGTGGTCAGGGTGAAGGACGGCTACGCGCGCAACTTCCTGATCCCGCAGG
GCAAGGCCAAGCGGGCCACCGAGACCAACCTGAAGGTGTTCGAGGAAAAG
CGTGCCGAGCTCGAGAAGGCGCAGGCCGAGCAACTGGCCCAGGCGCAGGA
GCGTGGTACGCGGCTCGAGGGCCTGATGGTGCAGATCACCCAGAAGGCCG
GGGTGGACGGGCGCCTGTTCGGGTCGGTGACCAACTACGACATCGTCGAG
GCGCTGGGCAAGCAGGGCTTCGAGGTCGAGCGCGCGCAGGTGCGCATGCC
GGCCGGCCCGATCAAGCAGATCGGCGACACCGCGATCACCGTCGCGTTGC
ACACCGACGTGGTGGCGAACATCACCGTTTCGGTCCTCGGTGAAAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18087:223..672+

>mRNA_P-wetherbeei_contig18087.2.1 ID=mRNA_P-wetherbeei_contig18087.2.1|Name=mRNA_P-wetherbeei_contig18087.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig18087:223..672+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGTCATACTGATGGAGAAAGTCGTCAACCTCGGCGGCCTCGGCGA
CGTGGTCAGGGTGAAGGACGGCTACGCGCGCAACTTCCTGATCCCGCAGG
GCAAGGCCAAGCGGGCCACCGAGACCAACCTGAAGGTGTTCGAGGAAAAG
CGTGCCGAGCTCGAGAAGGCGCAGGCCGAGCAACTGGCCCAGGCGCAGGA
GCGTGGTACGCGGCTCGAGGGCCTGATGGTGCAGATCACCCAGAAGGCCG
GGGTGGACGGGCGCCTGTTCGGGTCGGTGACCAACTACGACATCGTCGAG
GCGCTGGGCAAGCAGGGCTTCGAGGTCGAGCGCGCGCAGGTGCGCATGCC
GGCCGGCCCGATCAAGCAGATCGGCGACACCGCGATCACCGTCGCGTTGC
ACACCGACGTGGTGGCGAACATCACCGTTTCGGTCCTCGGTGAAAGCTGA
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