mRNA_P-wetherbeei_contig18039.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18039.1.1
Unique NamemRNA_P-wetherbeei_contig18039.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A6J4UBI0_9CHLR (RNA binding methyltransferase FtsJ like n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UBI0_9CHLR)

HSP 1 Score: 338 bits (868), Expect = 5.410e-112
Identity = 177/260 (68.08%), Postives = 209/260 (80.38%), Query Frame = 2
Query:  479 RLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGD---GVEFAPMVEAALEQA 1249
            RLDQ +V+R LAETRSRAK+ I+AGDVLVNG++ETRAG P    D V+ R  PRFVSRGGEKLDHAL  F IDV G++AADLGASTGGFTDCLLQRGAA+VYAVDVGYGQ+DE+LRTD+RV+VMER NARYL  LP+PV I  IDVSFISL LMFPVVA +   GA+CVPLIKPQFEAGR ++GKGGVVRD  +HR+VL   + +A E+GLT  G+VASPLRGPAGNVEFLA L  +   G+     + A M++ A++QA
Sbjct:    6 RLDQVLVDRELAETRSRAKALILAGDVLVNGQRETRAGHPTGPRDEVSLRAAPRFVSRGGEKLDHALATFEIDVEGMIAADLGASTGGFTDCLLQRGAAKVYAVDVGYGQIDERLRTDDRVVVMERVNARYLETLPQPVEIVVIDVSFISLALMFPVVARILANGAQCVPLIKPQFEAGRDEVGKGGVVRDPEIHRQVLARVVRSAAENGLTTLGMVASPLRGPAGNVEFLARL-RKCRSGEELTNTDLAGMIDTAMDQA 264          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7V8VX32_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VX32_9CHLR)

HSP 1 Score: 336 bits (862), Expect = 3.680e-111
Identity = 174/257 (67.70%), Postives = 203/257 (78.99%), Query Frame = 2
Query:  479 RLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGDGVEFAPMVEAALEQA 1249
            RLD A+V++GLA+TRSRAK+ I+AGDV+VNG++ETR+G PV ATD +A R KPRF SRGGEKLDHAL AF IDV+ LVAAD GASTGGFTDCLLQRGA RVYA+DVGYGQLDE+LR D+RV VMER N RYL +LPEP+ +  IDVSFISL LMFPVVA +      CVPLIKPQFEAGR D+GKGGVVRD A+HR+V+      A +HGL+  GLVASPL+GPAGNVEFLAHL   P      E   M++ AL +A
Sbjct:    6 RLDHALVDQGLADTRSRAKALILAGDVMVNGQRETRSGHPVNATDAIALRRKPRFASRGGEKLDHALAAFEIDVSSLVAADFGASTGGFTDCLLQRGARRVYAIDVGYGQLDERLRLDDRVTVMERTNVRYLESLPEPIDVVVIDVSFISLALMFPVVARVLSSDGVCVPLIKPQFEAGREDVGKGGVVRDPAIHRKVVGEVARNAEKHGLSVAGLVASPLKGPAGNVEFLAHLSRMP---GSQEIDTMIDHALGEA 259          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7W0KER1_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KER1_9CHLR)

HSP 1 Score: 325 bits (834), Expect = 6.130e-107
Identity = 176/263 (66.92%), Postives = 205/263 (77.95%), Query Frame = 2
Query:  476 VRLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGDGVEFAPMVEAALEQARRVAG 1264
             RLD  +VE GL ETRSRA++ I+AGDVLV+G++ETRAG  V   + V  R+KPRFVSRGGEKLDHAL AFGI+VTG +AADLGASTGGFTDCLLQRG A+VYAVDVG+GQLD ++R DERV+VME+ NARY+ +LPEPV +  IDVSFISL LMFPVVA + +PG  CVPLIKPQFEAGR +IGKGGVVRD  +HR VLE T   A E GL   GLVASPL+GPAGN+EFLAHL      GD   F   +EAA+ QA  + G
Sbjct:    5 ARLDLHLVEIGLVETRSRARALILAGDVLVDGQRETRAGYAVQPGNDVTLRQKPRFVSRGGEKLDHALDAFGIEVTG-IAADLGASTGGFTDCLLQRGVAQVYAVDVGHGQLDLRVRDDERVVVMEKTNARYIESLPEPVDLVVIDVSFISLSLMFPVVARVLKPGGLCVPLIKPQFEAGRDEIGKGGVVRDPRIHRVVLERTTRLAEEVGLGVRGLVASPLQGPAGNIEFLAHLHPGATSGDVPAF---IEAAMSQAAAIGG 263          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7V8WSL0_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WSL0_9CHLR)

HSP 1 Score: 325 bits (833), Expect = 9.300e-107
Identity = 172/260 (66.15%), Postives = 201/260 (77.31%), Query Frame = 2
Query:  479 RLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGDGVEFAPMVEAALEQARRV 1258
            RLD A+VER LA+TRSRA++ I+AGDVLVNG++   AG  VA +D VA RE+PRFVSRGGEKL HAL  F + V G++ ADLGASTGGFTDCLLQRGA RVYAVDVGYGQ+  +LR++ RV+VMER NARYL ALPEPVA+  +DVSFISL L+FPV+A L E G RC+PLIKPQFEAGR ++GKGGVVRD  VHRRVL  TL  A  H L    L ASPLRGPAGNVEFLAHL     P    E + M++AAL +A +V
Sbjct:    6 RLDVAVVERCLADTRSRARALILAGDVLVNGQRAQHAGDAVATSDVVALRERPRFVSRGGEKLAHALDRFAVHVDGVITADLGASTGGFTDCLLQRGAHRVYAVDVGYGQIAARLRSNPRVVVMERTNARYLEALPEPVALIVVDVSFISLNLIFPVIARLLEGGGRCIPLIKPQFEAGRTEVGKGGVVRDPRVHRRVLTETLNGAAGHRLVTRDLTASPLRGPAGNVEFLAHLELGSAPE---EMSTMIDAALAEAAKV 262          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A838GGY2_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GGY2_9CHLR)

HSP 1 Score: 323 bits (828), Expect = 5.120e-106
Identity = 171/265 (64.53%), Postives = 205/265 (77.36%), Query Frame = 2
Query:  476 VRLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGDGVEFAPMVEAALEQARRVAGGE 1270
             RLDQ +V+ GLAETRSRA++ ++AGDVLV+G++ETRAG  V   + V  R KPRFVSRGGEKLDHAL AFGI+V GLV ADLGASTGGF+DCLLQRG ARV+AVDVG+GQLD ++R DERV+VME+ NARY+ +LPEPV +  IDVSFISL LMFPVV  + +P   CVPLIKPQFEAGR +IGKGGVVR+  +HR VLE T   A ++GL   GLVASPL+GPAGN+EFLAHL      GD   F   V+AA+ +A  + G E
Sbjct:    5 ARLDQHLVQIGLAETRSRARALVLAGDVLVDGQRETRAGYAVQPGNDVTLRRKPRFVSRGGEKLDHALDAFGIEVAGLVVADLGASTGGFSDCLLQRGVARVFAVDVGHGQLDLRVRDDERVVVMEKTNARYIESLPEPVDLVVIDVSFISLSLMFPVVTRILKPAGLCVPLIKPQFEAGRYEIGKGGVVREPRIHRTVLERTTRLAEDNGLGVLGLVASPLQGPAGNIEFLAHLQLGTRSGDVPAF---VDAAMSEAAAIGGSE 266          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7W0PRS9_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PRS9_9CHLR)

HSP 1 Score: 323 bits (827), Expect = 7.260e-106
Identity = 165/234 (70.51%), Postives = 194/234 (82.91%), Query Frame = 2
Query:  479 RLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHL 1180
            RLDQ +VE GLA+TRSRAK+ I+AGDVLVNG++ +RAG  V  +D V  R+KPRFVSRGGEKLDHAL +FG+DV GLV ADLGASTGGF+DCLLQRG +RVYAVDVG+GQLD ++R DERV+VME+ NARY+ +LPEPV +  IDVSFISL LMFPVVA + +PG   VPLIKPQFEAGR +IGKGGVVR+  +HR VLE T   A E+GL   GLVASPL+GPAGN+EFLAHL
Sbjct:    6 RLDQHLVEIGLADTRSRAKALILAGDVLVNGQRVSRAGHQVQLSDDVVLRQKPRFVSRGGEKLDHALESFGVDVAGLVTADLGASTGGFSDCLLQRGVSRVYAVDVGHGQLDLRVRDDERVVVMEKTNARYIESLPEPVDLVVIDVSFISLSLMFPVVARILKPGGLGVPLIKPQFEAGREEIGKGGVVREPRIHRSVLERTCGLATENGLGVLGLVASPLQGPAGNIEFLAHL 239          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A6J4TM54_9CHLR (RNA binding methyltransferase FtsJ like n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4TM54_9CHLR)

HSP 1 Score: 315 bits (808), Expect = 5.990e-103
Identity = 171/262 (65.27%), Postives = 196/262 (74.81%), Query Frame = 2
Query:  476 VRLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGDGVEFAPMVEAALEQARRVA 1261
             RLD+A+V RGLA TRSRA++ I+AGDV VNG    RAG PV   D V    +PRFVSRGG+KL HAL  F I   GLVAAD GASTGGFTDCLLQ G +RVYAVDVGYGQLD +LR D RV VMER NARYL  LPEPV +  IDVSFISL ++FPV A +   G RCVPLIKPQFEAGR D+GKGGVV+D+A+HR+VLET LAAA E+G +  GL ASPLRGPAGNVEFLA L  +  P D    AP++ AAL +A  +A
Sbjct:   10 ARLDEAVVARGLANTRSRARALILAGDVQVNGATVVRAGAPVRPADAVELAARPRFVSRGGDKLAHALDRFRIVPIGLVAADFGASTGGFTDCLLQGGVSRVYAVDVGYGQLDARLRQDPRVTVMERLNARYLDRLPEPVDLVVIDVSFISLGVIFPVAAKVLISGGRCVPLIKPQFEAGRRDVGKGGVVKDAAIHRQVLETVLAAATENGFSIQGLTASPLRGPAGNVEFLAALTLDREPTDA---APLIAAALAEAAELA 268          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7W0A4M9_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A4M9_9CHLR)

HSP 1 Score: 291 bits (744), Expect = 3.050e-93
Identity = 155/267 (58.05%), Postives = 187/267 (70.04%), Query Frame = 2
Query:  473 GVRLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHEPPPGDG-VEFAPMVEAALEQARRVAGGE 1270
            G+RLD A+VERGL E+RSRA++ I+AGDVL+ G++ T+AG PV A   V  R+KPRFVSRGG+K+DHA   FGI V G V ADLGA TGGFTD +LQRGA +VYAVDVGYGQL  +LR D RV+VMER NARY+ + PEPV +  IDVSFISL  MFPV A +      CVPLIKPQFEAG+ ++GKGGVV+D A+HR VL + +  A   G    GL+ASPL GPAGN EFL              +   M+E AL+Q RR   GE
Sbjct:    5 GMRLDLALVERGLVESRSRARAMILAGDVLIGGQQVTQAGMPVTALHVVELRQKPRFVSRGGDKIDHAFDTFGISVDGRVVADLGACTGGFTDAVLQRGARKVYAVDVGYGQLAFRLREDARVVVMERTNARYIESFPEPVDVVVIDVSFISLSHMFPVAAQVLTTDGVCVPLIKPQFEAGKGEVGKGGVVKDPAIHRTVLRSVIEHARAAGFRCDGLIASPLVGPAGNHEFLGAFRRSGSDDTNQADVGEMIEGALDQVRRQDSGE 271          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7V9HKS2_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9HKS2_9CHLR)

HSP 1 Score: 288 bits (738), Expect = 2.070e-92
Identity = 154/234 (65.81%), Postives = 176/234 (75.21%), Query Frame = 2
Query:  479 RLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHL 1180
            RLD+A+V RGLA+ RSRA++ I+AGD+ VNG+   RAG  V A D +    KPRF SRGGEKL HAL  FGIDV G VAADLGASTGGFTDCLLQ GA RVYAVDVGYGQ+ ++LR D RV+VM+R NAR L  LPEP+ + +IDVSFISL+L+ P  A +  PG   VPLIKPQFEAG  D+ KGGVVRD AVH RVLE  LA A E G    GL ASPL+GPAGN EFLAHL
Sbjct:   11 RLDEAVVARGLADNRSRARALILAGDISVNGQVVHRAGAMVHAGDELGRTAKPRFASRGGEKLAHALEVFGIDVMGHVAADLGASTGGFTDCLLQAGAERVYAVDVGYGQILDRLRRDPRVVVMDRTNARSLLELPEPIDLVTIDVSFISLRLVLPTAARVLTPGGTVVPLIKPQFEAGPKDVKKGGVVRDPAVHTRVLEEVLAGAEELGFAVRGLTASPLKGPAGNREFLAHL 244          
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Match: A0A7V9VB61_9CHLR (TlyA family RNA methyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VB61_9CHLR)

HSP 1 Score: 284 bits (727), Expect = 1.400e-90
Identity = 153/235 (65.11%), Postives = 174/235 (74.04%), Query Frame = 2
Query:  479 RLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRAGRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTGGFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPEPVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGGVVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLV 1183
            RLD+A+V RGL E+RSRAK+FI+AGDVL+NG     A  PV  +D ++    PRFVSRGG KLD AL AF +  +G V ADLGASTGGFTD +LQRGA RVYAVDVGYG+L   LR DERV+VM+R NARYL  LPE V +  IDVSFISL+L+ PV A L  PG  CVPLIKPQFEAG+ D+GKGGVVRD AVH RVL   L AA      P  L+ASPL GPAGN EFLAHLV
Sbjct:    9 RLDEAVVGRGLLESRSRAKAFILAGDVLLNGSPVRHASAPVDVSDQISLAVPPRFVSRGGTKLDAALDAFQVSCSGQVVADLGASTGGFTDVVLQRGARRVYAVDVGYGELHPSLRDDERVVVMDRTNARYLAGLPEEVDLVVIDVSFISLRLILPVAARLLRPGGTCVPLIKPQFEAGQRDVGKGGVVRDPAVHARVLTEVLTAA-SVWFEPRDLIASPLTGPAGNREFLAHLV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18039.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J4UBI0_9CHLR5.410e-11268.08RNA binding methyltransferase FtsJ like n=1 Tax=un... [more]
A0A7V8VX32_9CHLR3.680e-11167.70TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A7W0KER1_9CHLR6.130e-10766.92TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A7V8WSL0_9CHLR9.300e-10766.15TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A838GGY2_9CHLR5.120e-10664.53TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A7W0PRS9_9CHLR7.260e-10670.51TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A6J4TM54_9CHLR5.990e-10365.27RNA binding methyltransferase FtsJ like n=1 Tax=un... [more]
A0A7W0A4M9_9CHLR3.050e-9358.05TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A7V9HKS2_9CHLR2.070e-9265.81TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]
A0A7V9VB61_9CHLR1.400e-9065.11TlyA family RNA methyltransferase n=1 Tax=Chlorofl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18039contigP-wetherbeei_contig18039:3..1281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog926550.CLDAP_02240
PFAMsFtsJ,S4
Model size1279
Max annot lvl200795|Chloroflexi
KEGG koko:K06442
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.33e-86
EggNOG OGsCOG1189@1|root,COG1189@2|Bacteria,2G6BX@200795|Chloroflexi
EC2.1.1.226,2.1.1.227
DescriptionRibosomal RNA methyltransferase RrmJ FtsJ
Cds size990
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.2818763-UTR-P-wetherbeei_contig18039:2..2911683186134.2818763-UTR-P-wetherbeei_contig18039:2..291Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18039 3..291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.291483-CDS-P-wetherbeei_contig18039:291..12811683186134.291483-CDS-P-wetherbeei_contig18039:291..1281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18039 292..1281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18039.1.1prot_P-wetherbeei_contig18039.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18039 292..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18039.1.1

>prot_P-wetherbeei_contig18039.1.1 ID=prot_P-wetherbeei_contig18039.1.1|Name=mRNA_P-wetherbeei_contig18039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MPWSATARPTRRRSRRWSACCSTCAPRRSRMTPPMPSPSPSATSRRSPSP
RASRAGGAEMAGVRLDQAMVERGLAETRSRAKSFIMAGDVLVNGEKETRA
GRPVAATDTVAFREKPRFVSRGGEKLDHALTAFGIDVTGLVAADLGASTG
GFTDCLLQRGAARVYAVDVGYGQLDEKLRTDERVIVMERENARYLTALPE
PVAITSIDVSFISLKLMFPVVAALSEPGARCVPLIKPQFEAGRADIGKGG
VVRDSAVHRRVLETTLAAALEHGLTPHGLVASPLRGPAGNVEFLAHLVHE
PPPGDGVEFAPMVEAALEQARRVAGGEEA*
back to top

mRNA from alignment at P-wetherbeei_contig18039:3..1281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18039.1.1 ID=mRNA_P-wetherbeei_contig18039.1.1|Name=mRNA_P-wetherbeei_contig18039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1279bp|location=Sequence derived from alignment at P-wetherbeei_contig18039:3..1281+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTCGGCTACGGCGTGATCGCCGGGGACCAGCAGCCCGAGCTGGTCGA TGTCGGCGTGCTGGAGACCTCCAACGACCGGCCCATGCCCGAACGGCTCC TGCGCCTCCACGAGGGGTTGCAGGGGCTGTTCGCGCGCTTCCAGCCGGAT GCGCTCGCGATCGAGCAGCTCTTCTTCGCGCGGAACGTCACCACCGCGAT CGCGGTGGGGCAGGCGCGGGGGGTGGCGCTGCTCGCCGCCGCCCAGGCGG GCGTCCCCGTCTCCGAATACAGCCCCTCCGAGGTGAAGCATGCCGTGGTC GGCTACGGCAAGGCCGACAAGGCGCAGATCCAGGAGATGGTCCGCCTGCT GCTCAACCTGCGCGCCGCGCCGCAGCCGGATGACGCCGCCGATGCCCTCG CCGTCGCCCTCTGCCACGTCCAGACGATCCCCTTCGCCTCGCGCGTCGCG GGCGGGAGGGGCTGAGATGGCGGGCGTCCGGCTCGACCAGGCGATGGTCG AACGCGGCCTCGCGGAGACGCGATCGCGCGCGAAGTCCTTCATCATGGCG GGCGATGTCCTCGTCAACGGCGAGAAGGAGACGCGCGCCGGCCGGCCGGT CGCGGCGACGGACACCGTCGCCTTCCGGGAAAAGCCCCGCTTCGTCAGCC GGGGCGGCGAGAAGCTGGACCACGCGCTGACAGCCTTCGGGATCGATGTC ACCGGCCTCGTCGCGGCGGACCTCGGGGCGAGCACCGGCGGCTTCACCGA CTGCCTGCTCCAGCGCGGCGCGGCGCGGGTCTACGCGGTGGATGTCGGCT ACGGCCAGCTCGACGAGAAGCTGCGCACCGACGAGCGCGTGATCGTGATG GAGCGGGAGAACGCCCGCTACCTCACCGCGCTGCCGGAGCCGGTCGCCAT CACCTCGATCGACGTCTCCTTCATCTCCCTCAAGCTGATGTTCCCGGTCG TGGCGGCCCTCTCCGAGCCAGGCGCCCGCTGCGTGCCACTGATCAAACCG CAGTTCGAGGCCGGCCGCGCCGATATCGGCAAGGGCGGCGTCGTCCGCGA TTCCGCCGTCCACCGCCGCGTGCTGGAGACGACCCTGGCCGCCGCGCTGG AGCATGGGCTGACGCCGCACGGCCTCGTCGCCTCGCCGTTGCGCGGCCCG GCCGGGAACGTCGAATTCTTGGCGCATCTCGTCCACGAACCGCCCCCAGG CGATGGCGTGGAGTTCGCACCGATGGTCGAGGCGGCGCTGGAGCAGGCCC GCCGTGTCGCGGGTGGGGAGGAAGCATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18039:3..1281+

>mRNA_P-wetherbeei_contig18039.1.1 ID=mRNA_P-wetherbeei_contig18039.1.1|Name=mRNA_P-wetherbeei_contig18039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig18039:3..1281+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTGGTCGGCTACGGCAAGGCCGACAAGGCGCAGATCCAGGAGATG
GTCCGCCTGCTGCTCAACCTGCGCGCCGCGCCGCAGCCGGATGACGCCGC
CGATGCCCTCGCCGTCGCCCTCTGCCACGTCCAGACGATCCCCTTCGCCT
CGCGCGTCGCGGGCGGGAGGGGCTGAGATGGCGGGCGTCCGGCTCGACCA
GGCGATGGTCGAACGCGGCCTCGCGGAGACGCGATCGCGCGCGAAGTCCT
TCATCATGGCGGGCGATGTCCTCGTCAACGGCGAGAAGGAGACGCGCGCC
GGCCGGCCGGTCGCGGCGACGGACACCGTCGCCTTCCGGGAAAAGCCCCG
CTTCGTCAGCCGGGGCGGCGAGAAGCTGGACCACGCGCTGACAGCCTTCG
GGATCGATGTCACCGGCCTCGTCGCGGCGGACCTCGGGGCGAGCACCGGC
GGCTTCACCGACTGCCTGCTCCAGCGCGGCGCGGCGCGGGTCTACGCGGT
GGATGTCGGCTACGGCCAGCTCGACGAGAAGCTGCGCACCGACGAGCGCG
TGATCGTGATGGAGCGGGAGAACGCCCGCTACCTCACCGCGCTGCCGGAG
CCGGTCGCCATCACCTCGATCGACGTCTCCTTCATCTCCCTCAAGCTGAT
GTTCCCGGTCGTGGCGGCCCTCTCCGAGCCAGGCGCCCGCTGCGTGCCAC
TGATCAAACCGCAGTTCGAGGCCGGCCGCGCCGATATCGGCAAGGGCGGC
GTCGTCCGCGATTCCGCCGTCCACCGCCGCGTGCTGGAGACGACCCTGGC
CGCCGCGCTGGAGCATGGGCTGACGCCGCACGGCCTCGTCGCCTCGCCGT
TGCGCGGCCCGGCCGGGAACGTCGAATTCTTGGCGCATCTCGTCCACGAA
CCGCCCCCAGGCGATGGCGTGGAGTTCGCACCGATGGTCGAGGCGGCGCT
GGAGCAGGCCCGCCGTGTCGCGGGTGGGGAGGAAGCATGA
back to top