mRNA_P-wetherbeei_contig17939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17939.1.1
Unique NamemRNA_P-wetherbeei_contig17939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig17939.1.1 vs. uniprot
Match: D8LKK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK3_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.520e-34
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    1 ERWRAVAHSGLFEGANIVRARDDGQG-GATLDVEVLERKSVVFEPGITKTLFDSKWAGEVIFEDRNLLGRNCVLGLNLRRSMSSPLTTCSIRLGSDRFSRPGAWNLVLFR 327
            +RWR V  SGLF G  +  A  + +  G TLD+ V ER SVVF PG+TKTLFDS WAGE+ FE++N+LGRN V+GL L RSMSSP T+ S+R+G++RF +PG W L  FR
Sbjct:  168 QRWRGVLGSGLFSGVQLSGAHQNAEDKGMTLDINVEERNSVVFAPGVTKTLFDSNWAGEISFEEKNVLGRNGVMGLKLHRSMSSPFTSFSLRMGNNRFGQPGGWQLSFFR 277
[Close]
BLAST of mRNA_P-wetherbeei_contig17939.1.1 vs. uniprot
Match: A0A6H5KZW3_9PHAE (Omp85 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 7.000e-34
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:    1 ERWRAVAHSGLFEGANIVRARDDGQG-GATLDVEVLERKSVVFEPGITKTLFDSKWAGEVIFEDRNLLGRNCVLGLNLRRSMSSPLTTCSIRLGSDRFSRPGAWNLVLFR 327
            +RWR V  SGLF G  +  A  + +  G TLD+ V ER SVVF PG+TKTLFDS WAGE+ FE+ N+LGRN V+GL L RSMSSP T+ S+R+G++RF +PG W L  FR
Sbjct:  364 QRWRGVLGSGLFSGVQLSGAHQNAEDKGMTLDINVEERSSVVFAPGVTKTLFDSNWAGEISFEETNVLGRNGVMGLKLHRSMSSPFTSFSLRMGNNRFGQPGGWQLSFFR 473
[Close]
BLAST of mRNA_P-wetherbeei_contig17939.1.1 vs. uniprot
Match: A0A835Z3Q2_9STRA (Omp85 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.700e-23
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 ERWRAVAHSGLFEGANIVRARD---DGQGGATLDVEVLERKSVVFEPGITKTLFDSKWAGEVIFEDRNLLGRNCVLGLNLRRSMSSPLTTCSIRLGSDRFSRPGAWNLVLFR 327
            +R+ ++  S LF+   +  A+    + +  AT+ + V ER+SVVFEPGITKTLF+++WAGEV FEDRN+ G N V+G+  RR + +  T+  +RLG+DRF R GAW+  LFR
Sbjct:  268 KRFNSLRASPLFDVVALSGAKKAPGEDEQSATVVLMVSERRSVVFEPGITKTLFNAQWAGEVAFEDRNVAGLNYVVGVEARRGVGASHTSYRVRLGNDRFGRLGAWSAALFR 379
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKK3_ECTSI2.520e-3457.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZW3_9PHAE7.000e-3457.27Omp85 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z3Q2_9STRA1.700e-2347.32Omp85 domain-containing protein n=1 Tax=Tribonema ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17939contigP-wetherbeei_contig17939:215..905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr46881
Model size327
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.22e-08
EggNOG OGs2E7XX@1|root,2SEFZ@2759|Eukaryota,2XCQY@2836|Bacillariophyta
Ec32 ortholog descriptionBacterial surface antigen (D15)
Ec32 orthologEc-16_003280.1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.487844-CDS-P-wetherbeei_contig17939:214..3881683186131.487844-CDS-P-wetherbeei_contig17939:214..388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17939 215..388 +
1683186131.5016694-CDS-P-wetherbeei_contig17939:752..9051683186131.5016694-CDS-P-wetherbeei_contig17939:752..905Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17939 753..905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17939.1.1prot_P-wetherbeei_contig17939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17939 215..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17939.1.1

>prot_P-wetherbeei_contig17939.1.1 ID=prot_P-wetherbeei_contig17939.1.1|Name=mRNA_P-wetherbeei_contig17939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
ERWRAVAHSGLFEGANIVRARDDGQGGATLDVEVLERKSVVFEPGITKTL
FDSKWAGEVIFEDRNLLGRNCVLGLNLRRSMSSPLTTCSIRLGSDRFSRP
GAWNLVLFR
back to top

mRNA from alignment at P-wetherbeei_contig17939:215..905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17939.1.1 ID=mRNA_P-wetherbeei_contig17939.1.1|Name=mRNA_P-wetherbeei_contig17939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=691bp|location=Sequence derived from alignment at P-wetherbeei_contig17939:215..905+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGTGGCGGGCAGTGGCCCATTCGGGACTGTTTGAGGGCGCTAACAT
CGTGCGGGCGCGGGACGACGGGCAGGGCGGCGCGACGCTCGACGTGGAGG
TGCTGGAGCGCAAAAGCGTCGTCTTCGAGCCCGGCATCACGAAGACCCTC
TTCGACAGCAAGTGGGCCGGCGAGGTGCGTTTCGCACGGCGACGGCGGCG
ACGATGACGGCTGCAACAGTTGCGGCAATGGCGGTGGCAGTGTCTGCCGT
GGTTGTAGTGGCGGCGGCGGCGGCGGCCGTGGTTGCAGCGACGGCGGCGG
TGGTGGTGACGGTGGCAGCGTCAGTGGAAGCTGAGGCGGCGGGGGAAGCT
GCGGCGGCGGCTGCAGTTTCCACCGCTTTGGTTTCAGCGGGGGCAGCTGC
CGCTCCGCCGCTTCCATCTTATGGCTGTCATGTTCCGCTGGTTTGCCACA
GCAGCCTCTCGGCCCATCACGGACGTTCGAAACACTTCTCCTCATCTCCC
GACTCCGCCGTTGCGGCTCGAGTATGTTCTGTCTGCAGGTGATTTTTGAA
GATCGGAATCTACTCGGGCGAAACTGCGTGCTCGGACTCAATCTCCGGCG
CAGCATGAGCAGCCCCCTGACGACATGCAGCATCCGCCTCGGGAGCGACC
GCTTCAGCCGCCCCGGCGCCTGGAACCTCGTGCTGTTCAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17939:215..905+

>mRNA_P-wetherbeei_contig17939.1.1 ID=mRNA_P-wetherbeei_contig17939.1.1|Name=mRNA_P-wetherbeei_contig17939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig17939:215..905+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGTGGCGGGCAGTGGCCCATTCGGGACTGTTTGAGGGCGCTAACAT
CGTGCGGGCGCGGGACGACGGGCAGGGCGGCGCGACGCTCGACGTGGAGG
TGCTGGAGCGCAAAAGCGTCGTCTTCGAGCCCGGCATCACGAAGACCCTC
TTCGACAGCAAGTGGGCCGGCGAGGTGATTTTTGAAGATCGGAATCTACT
CGGGCGAAACTGCGTGCTCGGACTCAATCTCCGGCGCAGCATGAGCAGCC
CCCTGACGACATGCAGCATCCGCCTCGGGAGCGACCGCTTCAGCCGCCCC
GGCGCCTGGAACCTCGTGCTGTTCAGG
back to top