mRNA_P-wetherbeei_contig17921.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17921.1.1
Unique NamemRNA_P-wetherbeei_contig17921.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: M4BR02_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BR02_HYAAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.270e-9
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   34 RVLDVVGAL--DPNG-WFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYG-GAGGLSGFCSELELVFRNCVAYNREDSEIAGLARRIIKRLPKIM 315
            R+L +V  L  +P G  F  PVD    PDYL+ +P P+ L T+L R  R SY  G+  +S F S++ LVF NC  YN E S I   A  ++  L K +
Sbjct:  246 RMLGIVTKLIKEPGGDIFEHPVDVEMVPDYLNFIPNPIDLGTILTRIGRESYYIGSSAVSLFASDVRLVFHNCKTYNAEGSAIWCTANELLHCLEKWL 343          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A7S4HDN0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HDN0_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.990e-8
Identity = 38/96 (39.58%), Postives = 46/96 (47.92%), Query Frame = 1
Query:   31 LRVLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLARRIIKRLPKIMA 318
            LR  D   A    G F  PVDP AFPDYLD VP PM L T+      G Y  A     F +++  V++N V YN E S +A  A  + K      A
Sbjct:   39 LRARDKASAW--RGIFGRPVDPVAFPDYLDAVPAPMDLGTIERALMAGRYAEAAA---FAADVSRVWQNAVLYNGEGSAVAEWAAELEKMFEARFA 129          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A6G0W686_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W686_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.860e-8
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   37 VLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLARRIIKRLPKIM 315
            VL ++ A + +  F  PVD   +PDY  +VP+PM L T+  +     Y        F  ++ELV+RNC AYN ED+ I+  AR++     +++
Sbjct:  764 VLKILRAKEASAPFNAPVDASMYPDYYRLVPEPMDLATIEDKLLNDEYDDKDL---FIEDVELVWRNCFAYNGEDAPISASARKLAATFSRLV 853          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A3Q1AQH7_AMPOC (Cat eye syndrome critical region protein 2 n=4 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1AQH7_AMPOC)

HSP 1 Score: 60.1 bits (144), Expect = 1.740e-7
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   25 AMLRVLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLA--------RRIIKRLP 306
            A+ +VL+ + A      F +PVD    P+Y +I+  PM L T+  +   G Y        FCS+++L+F+NC+ YN EDSE   +A        R I+K  P
Sbjct:  414 ALYKVLEALKAHKDAWPFLEPVDESYAPNYHEIIQTPMDLSTIEKKLNDGEYVAK---EEFCSDVKLMFKNCMEYNGEDSEYTIMAESLERCFSRAILKHFP 512          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A3B4ZKC3_9TELE (Cat eye syndrome chromosome region, candidate 2 n=2 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZKC3_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 5.930e-7
Identity = 35/102 (34.31%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   25 AMLRVLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLA--------RRIIKRLP 306
            A+ +VL+ + A      F +PVD    P+Y +I+  PM L T+  +   G Y        FCS+++L+F NC+ YN EDSE   +A        R I+K  P
Sbjct:  414 ALYKVLEALKAHKDAWPFLEPVDESYAPNYHEIIQTPMDLSTIEKKLNDGEYVTK---EEFCSDVKLMFENCMEYNGEDSEYTIMAESLERCFSRAILKHFP 512          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A507DVR2_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DVR2_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.090e-6
Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   37 VLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLARRIIKRLPKIM 315
            V + + A+D +G+F DPV P   PDY   V  PM   T+  +     Y     ++ F ++LEL++ NC+ YN+ ++E    A R  +R   ++
Sbjct:  839 VFEKIRAMDRDGYFQDPVTPDIAPDYATYVKTPMDFTTMARKVDNYEYKD---VTAFETDLELIWGNCMVYNKAETEYFKAAARYQRRAKPLV 928          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: I2CQX7_NANGC (Transcription initiation factor TFIID subunit 1 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQX7_NANGC)

HSP 1 Score: 57.4 bits (137), Expect = 1.480e-6
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   76 FADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNRED--------SEIAGLARRIIKRL-PKIMAHEAGVR 336
            F +PVD   +PDY +++  PM   T+L R +R  YG    LS F  +LEL+ RNC AY             ++ G+A+  +K L PKI   E  +R
Sbjct:  660 FCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGE---LSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIR 752          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: W7U279_9STRA (Transcription initiation factor subunit taf1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U279_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.520e-6
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   76 FADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNRED--------SEIAGLARRIIKRL-PKIMAHEAGVR 336
            F +PVD   +PDY +++  PM   T+L R +R  YG    LS F  +LEL+ RNC AY             ++ G+A+  +K L PKI   E  +R
Sbjct: 1651 FCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGE---LSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIR 1743          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A7S3TUP4_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TUP4_EMIHU)

HSP 1 Score: 57.0 bits (136), Expect = 1.700e-6
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   40 LDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYN 252
            LD + ALDP G+FA PVD  A P+Y  ++P PM   T+ +R +RG Y     L+    +  L+ RN + +N
Sbjct:  358 LDELQALDPLGYFAQPVDDEAIPEYRTVIPDPMDFSTMRVRLRRGEYSSPLQLA---DDFVLLCRNALVFN 425          
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Match: A0A024U5J2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5J2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.830e-6
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   37 VLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKTVLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLARRIIKRLPKIM 315
            VL ++   D    F  PVD   +PDY  ++P+PM L TV  +     Y G   +  F  +++L+++NC AYN   + IA +AR++     +++
Sbjct:  840 VLKILRGKDAAVPFNLPVDADMYPDYYTLIPEPMDLSTVEDKLLGDEYDG---IELFVDDVQLIWKNCFAYNGHVAPIAAMARKLSATFDRLV 929          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17921.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M4BR02_HYAAE8.270e-940.82Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S4HDN0_9EUKA1.990e-839.58Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6G0W686_9STRA3.860e-834.41Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3Q1AQH7_AMPOC1.740e-734.31Cat eye syndrome critical region protein 2 n=4 Tax... [more]
A0A3B4ZKC3_9TELE5.930e-734.31Cat eye syndrome chromosome region, candidate 2 n=... [more]
A0A507DVR2_9FUNG1.090e-631.18Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
I2CQX7_NANGC1.480e-636.46Transcription initiation factor TFIID subunit 1 (F... [more]
W7U279_9STRA1.520e-636.46Transcription initiation factor subunit taf1 n=2 T... [more]
A0A7S3TUP4_EMIHU1.700e-639.44Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A024U5J2_9STRA2.830e-631.18Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17921contigP-wetherbeei_contig17921:431..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5341.XP_007327477.1
PFAMsBromodomain,EPL1,PHD_2,PWWP,zf-HC5HC2H_2
Model size489
Max annot lvl4751|Fungi
KEGG koko:K11380
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0019787,GO:0031248,GO:0031974,GO:0031981,GO:0032991,GO:0033100,GO:0035064,GO:0036211,GO:0036409,GO:0036410,GO:0042393,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046872,GO:0046914,GO:0051276,GO:0061659,GO:0070013,GO:0070647,GO:0070775,GO:0071704,GO:0071840,GO:0140030,GO:0140034,GO:0140096,GO:1901564,GO:1902493,GO:1902494,GO:1990234,GO:1990467,GO:1990468
Exons1
Evalue1.11e-10
EggNOG OGsCOG5141@1|root,KOG0955@2759|Eukaryota,38CQY@33154|Opisthokonta,3NWQ8@4751|Fungi,3UY3T@5204|Basidiomycota,227H5@155619|Agaricomycetes,3W4NF@5338|Agaricales
DescriptionBromodomain and PHD finger-containing protein 3
Cds size489
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.1189651-CDS-P-wetherbeei_contig17921:430..9191683186131.1189651-CDS-P-wetherbeei_contig17921:430..919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17921 431..919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17921.1.1prot_P-wetherbeei_contig17921.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17921 431..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17921.1.1

>prot_P-wetherbeei_contig17921.1.1 ID=prot_P-wetherbeei_contig17921.1.1|Name=mRNA_P-wetherbeei_contig17921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MKREPQRDAMLRVLDVVGALDPNGWFADPVDPGAFPDYLDIVPQPMCLKT
VLMRAKRGSYGGAGGLSGFCSELELVFRNCVAYNREDSEIAGLARRIIKR
LPKIMAHEAGVRDGGSGGGKKGGGGGVGKGRGRGKAKAAAATEEEDAKEG
EEAASAAEAEDDG
back to top

mRNA from alignment at P-wetherbeei_contig17921:431..919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17921.1.1 ID=mRNA_P-wetherbeei_contig17921.1.1|Name=mRNA_P-wetherbeei_contig17921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig17921:431..919+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGGGAGCCGCAGCGGGATGCCATGCTGCGCGTGCTGGACGTTGT CGGCGCGCTTGACCCCAACGGATGGTTTGCAGACCCGGTGGACCCCGGAG CCTTCCCGGACTACTTGGACATCGTGCCGCAGCCCATGTGCCTCAAGACG GTGCTCATGCGCGCCAAGCGCGGCAGCTACGGTGGTGCCGGCGGCTTGTC GGGTTTCTGCAGCGAGCTCGAGCTCGTGTTCCGCAACTGCGTCGCATACA ACCGCGAGGACAGCGAGATCGCCGGCCTGGCGCGGCGCATCATCAAGCGG CTGCCCAAGATCATGGCCCACGAGGCAGGCGTCCGAGACGGCGGCAGCGG TGGCGGGAAGAAGGGCGGCGGCGGCGGTGTCGGCAAGGGAAGGGGCCGCG GCAAGGCCAAGGCGGCGGCGGCGACGGAGGAGGAAGACGCCAAGGAAGGG GAGGAGGCGGCTTCGGCCGCCGAGGCGGAGGACGACGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17921:431..919+

>mRNA_P-wetherbeei_contig17921.1.1 ID=mRNA_P-wetherbeei_contig17921.1.1|Name=mRNA_P-wetherbeei_contig17921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig17921:431..919+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGGGAGCCGCAGCGGGATGCCATGCTGCGCGTGCTGGACGTTGT
CGGCGCGCTTGACCCCAACGGATGGTTTGCAGACCCGGTGGACCCCGGAG
CCTTCCCGGACTACTTGGACATCGTGCCGCAGCCCATGTGCCTCAAGACG
GTGCTCATGCGCGCCAAGCGCGGCAGCTACGGTGGTGCCGGCGGCTTGTC
GGGTTTCTGCAGCGAGCTCGAGCTCGTGTTCCGCAACTGCGTCGCATACA
ACCGCGAGGACAGCGAGATCGCCGGCCTGGCGCGGCGCATCATCAAGCGG
CTGCCCAAGATCATGGCCCACGAGGCAGGCGTCCGAGACGGCGGCAGCGG
TGGCGGGAAGAAGGGCGGCGGCGGCGGTGTCGGCAAGGGAAGGGGCCGCG
GCAAGGCCAAGGCGGCGGCGGCGACGGAGGAGGAAGACGCCAAGGAAGGG
GAGGAGGCGGCTTCGGCCGCCGAGGCGGAGGACGACGGC
back to top