mRNA_P-wetherbeei_contig17919.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17919.1.1
Unique NamemRNA_P-wetherbeei_contig17919.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A835Z5U6_9STRA (SANT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.900e-34
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    1 VAVGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCF 279
            V++G +GY PEAG++ LER AML ++ H LRRPS +E+WSPLE+A FEGA+  +GK FH+IA  VGTK+ Q+ I FYY+WK T HYKQWK  F
Sbjct:   40 VSMGPYGYRPEAGSYALERAAMLSMIQHPLRRPSAVEQWSPLEVAKFEGAMCIYGKQFHKIAAEVGTKTCQQAIEFYYVWKLTGHYKQWKKVF 132
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A6H5KPS5_9PHAE (SANT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.000e-33
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 VAVGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCFRHEAAITMGSDGE 318
            V  G FGYN   G FP+ERP  LG++   +RRP+V+ERWSP ++A+FEGA+  HGK+FH++A+ +  K+V + + FYYMWKKT+HYKQWK  FR E AI    +G+
Sbjct:  617 VRTGPFGYNSVEGRFPMERPTTLGMIKAGIRRPTVIERWSPHDVALFEGAISVHGKVFHKVAEEIDGKTVADVVEFYYMWKKTNHYKQWKAMFRAEQAILQAQEGD 722
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: D7FK88_ECTSI (SANT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK88_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.180e-32
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    1 VAVGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCFRHEAAITMGSD 312
            V  G FGYN   G FP+ERP  LG++   +RRP+V+ERWSP ++A+FEGA+  HGK+FH++A+ +  K+V + + FYYMWKKT+HYKQWK  FR E AI    +
Sbjct:  418 VRTGPFGYNSVEGRFPMERPTTLGMIKAGMRRPTVIERWSPYDVALFEGAISVHGKVFHKVAEEIEGKTVADVVEFYYMWKKTNHYKQWKSMFRAEQAILQAQE 521
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A7S0KBC3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBC3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.960e-30
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:   10 GSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCFRHEAAI 297
            G+FGYN + G +P+ERP  LG++   LRRP+V+E+WSP E+A FE A+  +GK+FH + KVV TKS +E + FYY+WKKTSHYK+WK   +HE  I
Sbjct:  268 GAFGYNSDKGNYPVERPNTLGLLTSPLRRPTVIEKWSPYEVASFEAALTLYGKVFHSVQKVVKTKSTKEIVEFYYVWKKTSHYKRWKQ--QHEPEI 361
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A6U0ZH30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZH30_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.900e-29
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    1 VAVGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCFRHEAAITMGSDGEEEED 330
            + +G FGY+P  G FP+ER   LG + + LRRPSV+ERWSP EIA FEGA+   GK FH++ + V +K+ +E + FYY+WKKT+HY  WK  +  E       D EE+ D
Sbjct:   88 IQIGPFGYDPLKGRFPVERLHALGYITNPLRRPSVIERWSPYEIAKFEGAIALFGKHFHKVQRAVESKTTKEVVEFYYVWKKTAHYDHWKRIYEPEMIPVEDGDDEEKGD 197
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A4D9CXF5_9STRA (SANT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXF5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.890e-28
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 VAVGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCF 279
            V+ G +GY+   G  PLERP  LG+++   RR +VME WSP E+A FEGA+   GK F+EI+K++ +KS +ECI FYY+WK TSHY+QWK  F
Sbjct:  119 VSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSF 211
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A7S2R001_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R001_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.680e-28
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    7 VGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWK 270
            +G FGY+P  G +P+ER    G++   LRRP+V+E+WSP EIA FE AV   GK FH + K++ TKS +E + FYY+WKKT HYK WK
Sbjct:   32 LGPFGYDPAQGKYPIERITAYGVLTSPLRRPTVVEKWSPYEIATFEAAVAFLGKQFHRVQKLIRTKSTKEIVEFYYIWKKTHHYKMWK 119
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A7S3HK57_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK57_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.780e-28
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   10 GSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWK 270
            G +GY+ E G FP+E+ + LG +L  LR+P+V+E+WSP+E+A+FE A+  +GK FH + K V TKS QE I FYY WKKT+HYK+WK
Sbjct:   96 GPYGYDAENGRFPVEKMSSLGWLLCPLRKPTVIEKWSPIEVAVFEAAMTLYGKNFHTVQKYVKTKSTQEVIEFYYDWKKTNHYKEWK 182
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A7S0UFW2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFW2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.770e-28
Identity = 46/86 (53.49%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   13 SFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWK 270
            S+GYNP+   +P+E+ ++LG +   LRRP+V+E+WSP EI IFEG++  +GK F  ++K +GTK+ QE I FYY+WKKT+HYK+WK
Sbjct:  208 SYGYNPQEREYPIEKISLLGFMKSPLRRPTVIEKWSPYEIGIFEGSMLHYGKDFRNVSKQIGTKTTQEVIDFYYIWKKTAHYKRWK 293
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BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Match: A0A1Z5JP76_FISSO (SANT domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP76_FISSO)

HSP 1 Score: 108 bits (270), Expect = 1.490e-27
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   10 GSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGAVFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWK 270
            GS+GY+P    FPLE  + LG +   LRRP V+E+WSP EIA+FE A+ +HGK F ++   +G+K+ +E I FYYMWKKTSHY  WK
Sbjct:   79 GSYGYDPNKLQFPLEAVSALGYLKSPLRRPLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWK 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17919.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5U6_9STRA2.900e-3460.22SANT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5KPS5_9PHAE2.000e-3352.83SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FK88_ECTSI2.180e-3252.88SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S0KBC3_9STRA5.960e-3055.21Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A6U0ZH30_9STRA6.900e-2948.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CXF5_9STRA1.890e-2853.76SANT domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2R001_9STRA2.680e-2853.41Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3HK57_9STRA3.780e-2855.17Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0UFW2_9STRA8.770e-2853.49Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1Z5JP76_FISSO1.490e-2754.02SANT domain-containing protein n=2 Tax=Fistulifera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17919contigP-wetherbeei_contig17919:190..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FK88
Preferred nameRCOR3
PFAMsELM2,Myb_DNA-binding
Model size336
Max annot lvl2759|Eukaryota
KEGG koko:K11829
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000785,GO:0000981,GO:0000982,GO:0001067,GO:0001078,GO:0001227,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003714,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007596,GO:0007599,GO:0008134,GO:0008150,GO:0008152,GO:0008593,GO:0009611,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033558,GO:0034101,GO:0035065,GO:0035067,GO:0035601,GO:0036211,GO:0042060,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045652,GO:0045654,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0060968,GO:0061085,GO:0061086,GO:0065007,GO:0065008,GO:0070013,GO:0070933,GO:0071704,GO:0071840,GO:0080090,GO:0090239,GO:0090241,GO:0090308,GO:0090309,GO:0097159,GO:0098732,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1905268,GO:1905269,GO:1990391,GO:2000026,GO:2000112,GO:2000113,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252
Exons2
Evalue3.57e-33
EggNOG OGsKOG1194@1|root,KOG1194@2759|Eukaryota
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-17_003180.1
Descriptiontranscription corepressor activity
Cds size336
COG categoryK
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.9071522-CDS-P-wetherbeei_contig17919:189..3781683186130.9071522-CDS-P-wetherbeei_contig17919:189..378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17919 190..378 +
1683186130.9163778-CDS-P-wetherbeei_contig17919:742..8891683186130.9163778-CDS-P-wetherbeei_contig17919:742..889Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17919 743..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17919.1.1prot_P-wetherbeei_contig17919.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17919 190..889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17919.1.1

>prot_P-wetherbeei_contig17919.1.1 ID=prot_P-wetherbeei_contig17919.1.1|Name=mRNA_P-wetherbeei_contig17919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
VAVGSFGYNPEAGAFPLERPAMLGIVLHELRRPSVMERWSPLEIAIFEGA
VFKHGKLFHEIAKVVGTKSVQECIAFYYMWKKTSHYKQWKVCFRHEAAIT
MGSDGEEEEDDD
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mRNA from alignment at P-wetherbeei_contig17919:190..889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17919.1.1 ID=mRNA_P-wetherbeei_contig17919.1.1|Name=mRNA_P-wetherbeei_contig17919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=700bp|location=Sequence derived from alignment at P-wetherbeei_contig17919:190..889+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGGTTGGTTCTTTTGGCTACAACCCCGAGGCCGGGGCGTTCCCGCT
GGAGCGGCCGGCGATGCTGGGCATTGTGCTGCACGAGCTGCGGCGGCCGA
GCGTTATGGAGCGGTGGAGCCCCCTGGAGATCGCCATCTTCGAGGGCGCC
GTCTTCAAGCACGGCAAGCTCTTTCACGAGATCGCCAAGGTCCGTCGATT
GATCCACCCGTTGGTCGGAACAGACACCCAGCCGGGCTGAGAGGAAAGCG
AGGGAGCGGGGTTGAAGATTGAGATTGCAGCGGAAGGGCGGCGCTCTGCA
TGCTTCCGTGAAACTTTCTCGCTTGATGTTGCTGTCCGTTGGAAAGAAAT
GCTGTCGTGCGCGGTGGTTCTGAAAGGGGGGGTCGACGCATTAAGAAGGT
ATTGACGTGCAATTCACTTGACTGATTTTAGAGGGAGGCTGACCACTTTG
TCCATGCTTTTCCCTTCACGGCTCTTCTTCGATCCTCCCCACTACGGGCG
GATGGGCGGTGGTGGTGAAAACCGTGTATGTACCAAAAACAACAAACAAA
CAGGTGGTAGGAACCAAGTCGGTGCAGGAGTGCATCGCCTTCTACTACAT
GTGGAAGAAAACGTCGCATTACAAGCAATGGAAAGTGTGCTTCCGCCATG
AGGCAGCCATTACCATGGGCAGCGACGGCGAGGAGGAGGAGGACGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17919:190..889+

>mRNA_P-wetherbeei_contig17919.1.1 ID=mRNA_P-wetherbeei_contig17919.1.1|Name=mRNA_P-wetherbeei_contig17919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig17919:190..889+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGGTTGGTTCTTTTGGCTACAACCCCGAGGCCGGGGCGTTCCCGCT
GGAGCGGCCGGCGATGCTGGGCATTGTGCTGCACGAGCTGCGGCGGCCGA
GCGTTATGGAGCGGTGGAGCCCCCTGGAGATCGCCATCTTCGAGGGCGCC
GTCTTCAAGCACGGCAAGCTCTTTCACGAGATCGCCAAGGTGGTAGGAAC
CAAGTCGGTGCAGGAGTGCATCGCCTTCTACTACATGTGGAAGAAAACGT
CGCATTACAAGCAATGGAAAGTGTGCTTCCGCCATGAGGCAGCCATTACC
ATGGGCAGCGACGGCGAGGAGGAGGAGGACGACGAC
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