mRNA_P-wetherbeei_contig17910.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17910.2.1
Unique NamemRNA_P-wetherbeei_contig17910.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: UPI0004A6B825 (MFS transporter n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0004A6B825)

HSP 1 Score: 188 bits (478), Expect = 9.390e-55
Identity = 93/181 (51.38%), Postives = 126/181 (69.61%), Query Frame = 1
Query:   25 HAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPE 567
            H PPWLFGITN+PFGV+G Y  VAMPF+L + G+    I  + A  LVP ++Q  WAP+LD+G+RRR WL+L++  G + L  +LLL LP QL  +++  +LG GL GLV + NGALV+T +PP L GRA+GW+NAANLG   +GGG V++L   ++   AA+ L LL FLP+LA   + E
Sbjct:    9 HPPPWLFGITNIPFGVAGGYTSVAMPFVLSKAGVPMSTIGGISAAVLVPLSWQFLWAPMLDVGLRRRTWLLLMAGLGALLLAASLLLKLPTQLWPFEVCCVLGQGLTGLVSASNGALVATQVPPHLHGRASGWLNAANLGGNAVGGGLVIQLGDSLTPHIAAVALGLLTFLPALAVLLLDE 189          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A6L4ZI72_9BACT (Major facilitator transporter (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A6L4ZI72_9BACT)

HSP 1 Score: 143 bits (361), Expect = 1.590e-38
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   25 HAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPEDAPMREPLVPHMKLMLKD 621
            H P W+FG+  LP+GVSG +AG  +  +L++ G+D + IA+  A +L+ A +Q  W P +D+G RRR W +++   GG+ +  T L+D+   + L+  ++L       L G C G L++TTLP  +RG+AAG+ NA N+GA  +G G  + L  + S    ++   L+  +P L A  VPE  P++  +    + M +D
Sbjct:   11 HPPVWIFGLLYLPYGVSGAFAGATLGSILQKYGVDKNKIASAVAASLLIATFQFLWTPTVDIGFRRRTWYMIMCVLGGLTMASTALIDVANNINLFIYVVLTSQVFINLTGPCIGGLMATTLPDDVRGKAAGFSNAGNIGAGAIGAGISLTLFQNYSLPVVSIVTGLMLMIPGLIALAVPELKPIKRKVSELFRTMFRD 209          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A538PZV9_9DELT (MFS transporter n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538PZV9_9DELT)

HSP 1 Score: 119 bits (299), Expect = 2.500e-28
Identity = 68/200 (34.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:    1 DGGSENKPHAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANL-GAAVLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPED----APMRE 585
            DG      H PPWLF +T   +GV G + G+ MP+     G D   I    AL  VP      +AP++D+G RR+ WL+++S  G   L  +  + LP Q+G Y         + GLVGSC+G L++ +LP  LRG+A GW N  NL G ++    A+  +  DV      + + ++   P++ A W+ E      P+RE
Sbjct:    5 DGHPGPATHPPPWLFVLTGTTYGVVGQFTGLVMPYATEHAGADLGAIGWYNALLFVPTFLLFLYAPIVDIGPRRKHWLLIVSSIGAGSLIASFQMKLPDQIGGYLAFGFAAQLISGLVGSCSGGLMAASLPDELRGKAGGWYNIGNLSGGSLFATLAIWMIGHDVDPRLIGVLVAVMMVAPAIGAQWIDEPHRSHVPVRE 204          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A257UYM1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium 37-65-4 TaxID=1970486 RepID=A0A257UYM1_9BACT)

HSP 1 Score: 107 bits (267), Expect = 6.780e-24
Identity = 67/188 (35.64%), Postives = 98/188 (52.13%), Query Frame = 1
Query:   16 NKPHAP-PWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPEDAP 576
            + P+ P PW+FGI  LP  V   +    +PFLL + G+    I  +G+L  +P      WAP++D+ +RRR WLV  +    IC+   L L     L +    LL+G     LV + +G L+ T LPP+ + +AA W  A  L    LGG  V+ L T +    + L L ++ FLP+L AF +PE  P
Sbjct:    5 DSPNWPRPWVFGILILPVAVYVGFTATPLPFLLSKAGISVYEIGAIGSLLQLPNILVFLWAPLVDVRLRRRTWLVFSAAATAICMWIALPLVGTASLYVLTTFLLVGGVTVSLVLASSGGLMVTALPPTAQSKAAAWNQAGYLAGGALGGALVLWLVTRLPVFFSGLILAVVLFLPALLAFTLPEKEP 192          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A7I9VLM1_9DELT (Integral membrane signal transducer protein n=1 Tax=Anaeromyxobacter sp. Red267 TaxID=2590199 RepID=A0A7I9VLM1_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 7.480e-19
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   10 SENKPHAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPR-QLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPE 567
            +E +P +PPW+F +T LPF  +  Y  +A PF L  +G+    I  M A AL P A++  WAP+LDLG RRR W    S      LG   LL  P   LG +  L            +    L++ T  P  +G AA W  A N+G   + G  V+ ++   S   A   L  L    ++AA ++ E
Sbjct:    2 TEARP-SPPWIFSLTILPFAAAIGYVTIAAPFWLATRGVSLVAIGAMSATALAPHAFKFLWAPLLDLGARRRAWFAATSLLSAALLGALALLPAPEAHLGAFTALAFAANVAATTACAAADGLMAITTAPERKGAAAAWRMAGNVGGTNVLGALVLWVSKYSSVGVAGGALAALTAGSAVAALFIHE 187          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A643FD53_IDEDE (MFS transporter n=2 Tax=Ideonella TaxID=36862 RepID=A0A643FD53_IDEDE)

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-18
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 1
Query:   19 KPHAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPRQL---GLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATD--VSQTAAALGLFLLAFLPSLAAFWVPEDA 573
             P APPW+F +  +PFG+ G + GVA+ + L++ G+    IA + AL+ VP  ++  WAP++DL   RR W +  +   G  LG   +    R     G   +++L+      + G    +L++ +     +GRAAGW  A NLG   LGGG  + L  D  VS  A+   +  L  L  +   ++PE A
Sbjct:   11 SPSAPPWIFMVLIVPFGLVGGFLGVALAYELKQAGISAAAIAGLIALSYVPNTWKFLWAPLVDLSWTRRHWYLASTLVTG--LGMVSMAWFSRDALHWGALTVVMLITNVTSTVSGMAVDSLMAHSTADEEKGRAAGWFQAGNLGGGALGGGLALWLVQDWQVSVLASGWVMAALCVLSCVPLLFLPEPA 198          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: UPI001CEC2AF5 (MFS transporter n=1 Tax=Ideonella sp. B7 TaxID=2831643 RepID=UPI001CEC2AF5)

HSP 1 Score: 92.8 bits (229), Expect = 1.550e-18
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   19 KPHAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPR-QLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLA 531
            +P APPW+F +  +PFG+ G + GVA+ + L++ G+    IA + AL+ VP  ++ FWAP++DL   RR W +  +    + + G           G   +++L+      + G    +L++ +     +GRAAGW  A NLG   LGGG  + L  D   +  A G  + A
Sbjct:   16 RPSAPPWIFMVLIVPFGLVGGFLGVALAYELKQAGVSAAAIAGLIALSYVPNTWKFFWAPLVDLSWTRRHWYLASTLVTALGMVGMAWFSRDALHWGALTVVMLITNVTSTVSGMAVDSLMAHSTADEEKGRAAGWFQAGNLGGGALGGGLALWLVQDWQVSVLASGWLMAA 187          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: UPI0013D57579 (MFS transporter n=1 Tax=Mangrovibacterium lignilyticum TaxID=2668052 RepID=UPI0013D57579)

HSP 1 Score: 84.7 bits (208), Expect = 9.590e-16
Identity = 56/162 (34.57%), Postives = 91/162 (56.17%), Query Frame = 1
Query:   58 LPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFG--GICLGGTLLLDLPRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLAFL 537
            +PFGV   Y  V + +LL + G+  + +A + A+ L+P  ++  WAP++D  +  ++W V+ +     GI L G L L +   L L  +++ L + +  +V     +L++   P  L+GRAAGW+NA NLG   LGGGA + LA  +S+   A G+  LA L
Sbjct:    5 MPFGVMSGYVTVTIGYLLTQAGIPLEKVAPIVAITLLPNIFKFAWAPLVDTTLTVKKWYVIANIGTALGIFLTGILPLKV-ESLTLMAVIVFLLSLVNTIVAMSTESLLAHDTPDHLKGRAAGWLNAGNLGGLGLGGGAGLWLAQHLSEPWMAGGIIALACL 165          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A538SFQ7_9BACT (MFS transporter n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A538SFQ7_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 3.320e-15
Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   58 LPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDL------PRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAAVLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPE 567
            LP+G+SG +A V +PF+L R G    + A++ A+ +    ++  W PV DL +  R+W +L     G+      LL L      P       +++ +      LV    G L++ T+P + +GRA GW  A NLG   LGGGA + LAT  S   A   L  +    +L+  +VP+
Sbjct:   17 LPYGISGGFASVTLPFVLTRAGFPVAVAASIVAIGISSNLWRFLWGPVADLTLTPRRWYLL-----GLAAAAATLLLLSRMPMRPNAAFALTVVVFISQVAATLVVLPVGGLMAHTVPDAQKGRAGGWFQAGNLGGIGLGGGAGVWLATHRSTPIAGAALAAMMAACALSLLFVPD 187          
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Match: A0A643FG86_IDEDE (MFS transporter n=2 Tax=Ideonella TaxID=36862 RepID=A0A643FG86_IDEDE)

HSP 1 Score: 60.8 bits (146), Expect = 2.360e-7
Identity = 53/154 (34.42%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   43 FGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATMGALALVPAAYQLFWAPVLD------LGIRRRQWLVLLSFFGGICLGGTLLLDLPRQLGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNA-ANLGAAVLGGGAVMKLA 483
            F +  L  G+   +A  A+   LRRQG+ P  I        +P A++  + PV+D      LG RRR W++ +     + L  T++LDLPRQLGL+ ++LL+             AL   TL    R  A G + A A+LG AV G GA+   A
Sbjct:   17 FFLLYLTEGIPLGFAATAVATQLRRQGVGPAEIGAFVGSFYLPWAFKWAYGPVVDVFASARLG-RRRGWILGMQIMMVLTLLSTVMLDLPRQLGLFTLILLVHNVFSATQDVAIDALAVNTLQEHERATANGMMFAGASLGQAVGGSGALFVAA 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17910.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
UPI0004A6B8259.390e-5551.38MFS transporter n=1 Tax=Nevskia soli TaxID=418856 ... [more]
A0A6L4ZI72_9BACT1.590e-3835.18Major facilitator transporter (Fragment) n=1 Tax=b... [more]
A0A538PZV9_9DELT2.500e-2834.00MFS transporter n=2 Tax=Deltaproteobacteria bacter... [more]
A0A257UYM1_9BACT6.780e-2435.64Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7I9VLM1_9DELT7.480e-1933.16Integral membrane signal transducer protein n=1 Ta... [more]
A0A643FD53_IDEDE1.100e-1832.11MFS transporter n=2 Tax=Ideonella TaxID=36862 RepI... [more]
UPI001CEC2AF51.550e-1831.40MFS transporter n=1 Tax=Ideonella sp. B7 TaxID=283... [more]
UPI0013D575799.590e-1634.57MFS transporter n=1 Tax=Mangrovibacterium lignilyt... [more]
A0A538SFQ7_9BACT3.320e-1531.82MFS transporter n=1 Tax=Candidatus Eisenbacteria b... [more]
A0A643FG86_IDEDE2.360e-734.42MFS transporter n=2 Tax=Ideonella TaxID=36862 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17910contigP-wetherbeei_contig17910:773..1393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122604.JONR01000031_gene1253
PFAMsMFS_1
Model size621
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.54e-55
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1QYFY@1224|Proteobacteria
DescriptionMajor Facilitator Superfamily
Cds size621
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.7743232-CDS-P-wetherbeei_contig17910:772..13931683186130.7743232-CDS-P-wetherbeei_contig17910:772..1393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17910 773..1393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17910.2.1prot_P-wetherbeei_contig17910.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17910 773..1393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17910.2.1

>prot_P-wetherbeei_contig17910.2.1 ID=prot_P-wetherbeei_contig17910.2.1|Name=mRNA_P-wetherbeei_contig17910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
DGGSENKPHAPPWLFGITNLPFGVSGTYAGVAMPFLLRRQGLDPDMIATM
GALALVPAAYQLFWAPVLDLGIRRRQWLVLLSFFGGICLGGTLLLDLPRQ
LGLYKILLLLGAGLCGLVGSCNGALVSTTLPPSLRGRAAGWVNAANLGAA
VLGGGAVMKLATDVSQTAAALGLFLLAFLPSLAAFWVPEDAPMREPLVPH
MKLMLKD
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mRNA from alignment at P-wetherbeei_contig17910:773..1393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17910.2.1 ID=mRNA_P-wetherbeei_contig17910.2.1|Name=mRNA_P-wetherbeei_contig17910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig17910:773..1393+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGGGGAAGCGAGAATAAGCCGCACGCTCCTCCCTGGCTTTTTGGGAT TACCAATCTGCCGTTTGGCGTCTCGGGCACCTACGCCGGAGTCGCTATGC CTTTCTTGCTGCGGCGCCAGGGGCTGGACCCTGATATGATTGCGACGATG GGTGCGCTCGCGTTGGTGCCTGCTGCCTATCAGCTCTTCTGGGCTCCGGT GCTGGACCTGGGAATTCGCCGCCGCCAGTGGCTGGTTTTGCTTTCCTTTT TTGGCGGCATCTGCCTGGGCGGAACCTTGCTGCTCGACCTTCCACGCCAG CTCGGGCTCTACAAGATATTGCTGCTTCTGGGGGCGGGTCTGTGCGGATT GGTTGGCTCCTGCAACGGCGCTCTGGTCTCCACGACGCTCCCGCCCTCCC TGCGCGGACGCGCGGCCGGGTGGGTCAATGCAGCCAATCTGGGGGCGGCA GTTCTCGGCGGCGGCGCCGTCATGAAGTTGGCCACCGACGTCTCCCAGAC TGCAGCTGCCCTGGGGCTGTTTTTACTGGCTTTTCTGCCGTCGTTGGCGG CTTTCTGGGTTCCCGAGGACGCGCCCATGCGCGAACCTCTTGTGCCTCAC ATGAAGCTGATGCTCAAGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17910:773..1393+

>mRNA_P-wetherbeei_contig17910.2.1 ID=mRNA_P-wetherbeei_contig17910.2.1|Name=mRNA_P-wetherbeei_contig17910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig17910:773..1393+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGGGGAAGCGAGAATAAGCCGCACGCTCCTCCCTGGCTTTTTGGGAT
TACCAATCTGCCGTTTGGCGTCTCGGGCACCTACGCCGGAGTCGCTATGC
CTTTCTTGCTGCGGCGCCAGGGGCTGGACCCTGATATGATTGCGACGATG
GGTGCGCTCGCGTTGGTGCCTGCTGCCTATCAGCTCTTCTGGGCTCCGGT
GCTGGACCTGGGAATTCGCCGCCGCCAGTGGCTGGTTTTGCTTTCCTTTT
TTGGCGGCATCTGCCTGGGCGGAACCTTGCTGCTCGACCTTCCACGCCAG
CTCGGGCTCTACAAGATATTGCTGCTTCTGGGGGCGGGTCTGTGCGGATT
GGTTGGCTCCTGCAACGGCGCTCTGGTCTCCACGACGCTCCCGCCCTCCC
TGCGCGGACGCGCGGCCGGGTGGGTCAATGCAGCCAATCTGGGGGCGGCA
GTTCTCGGCGGCGGCGCCGTCATGAAGTTGGCCACCGACGTCTCCCAGAC
TGCAGCTGCCCTGGGGCTGTTTTTACTGGCTTTTCTGCCGTCGTTGGCGG
CTTTCTGGGTTCCCGAGGACGCGCCCATGCGCGAACCTCTTGTGCCTCAC
ATGAAGCTGATGCTCAAGGAC
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