mRNA_P-wetherbeei_contig1784.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1784.1.1
Unique NamemRNA_P-wetherbeei_contig1784.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1784.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1784contigP-wetherbeei_contig1784:1052..3517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2466
Hectar predicted targeting categoryother localisation
Exons1
Cds size2250
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.7958682-CDS-P-wetherbeei_contig1784:1051..33011683186128.7958682-CDS-P-wetherbeei_contig1784:1051..3301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1784 1052..3301 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.8041317-UTR-P-wetherbeei_contig1784:3301..35171683186128.8041317-UTR-P-wetherbeei_contig1784:3301..3517Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1784 3302..3517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1784.1.1prot_P-wetherbeei_contig1784.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1784 1052..3301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1784.1.1

>prot_P-wetherbeei_contig1784.1.1 ID=prot_P-wetherbeei_contig1784.1.1|Name=mRNA_P-wetherbeei_contig1784.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=750bp
MSSSGARGRMGSPQSDRGDPSGYGTGHGSLALRSYGPMSGSRGPPASDQL
GRSAGAGGGSASPPSRARPGGLLLRGEPPGSPRFGNVRDRGFDNRAPGGF
SSGSGGALAGGSTIGVSGSDRGGGGSSGGGGGRFGHGGGGGGEGSRRGRP
TVGRSGAGRGGGGRWGRTTEGSGGTGGLSTYGPAAYSETPPLPSSRGGGY
ADLAARDDSRERDRADRRDDRRGSFGSGASYSGGGGGYNGNGGGSFSCGG
PLAGSESGSFPSRGGAGGAGSYGPPPGRDLERDRELDRDRDRGGLRMFSS
GSISGGGSGGGGGSGGSSGGGGVGGGAGGSEGPGGGGDKSRGLSRPSGYA
AMADDGRDDRGREYDRDRSLDRERDRDVPRRDSSPPPPPPPFQLPFRAGL
GSPPQSRPAPDRTGGPANADRFGGRRDSGSGGDAPPGPPSRPPPPPTLQP
GSWLNSQREPVPASALPATDEFGRIRDRSRDNWDARDGDRPGGGAGGAAS
APGSAFFPLGGRASSFSARLSARSDDRGPNWGGFGPGGGGPGGGGGGSGG
GSGDFRRGGSFGARGGYGSLGGGYASLVDREDERQRPPTASDGRSSPRAR
SASPPARGRGDGAGGGGGSGGASSPPRHGFSPQDGGFRQQHTSSSGSLRS
LGGGSLSRVSSAERAGGGLRYGAAPAERAEKPAPSESAAGMPRSMTAGAV
PAGAVPQAPPLALPPKAASGGVPPAAPSAALRPSAPSAAISTVPPALASG
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mRNA from alignment at P-wetherbeei_contig1784:1052..3517-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1784.1.1 ID=mRNA_P-wetherbeei_contig1784.1.1|Name=mRNA_P-wetherbeei_contig1784.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2466bp|location=Sequence derived from alignment at P-wetherbeei_contig1784:1052..3517- (Phaeothamnion wetherbeei SAG_119_79)
TGGAGAGACCTCAGAAGGCGCCCGGAGACGATGAGCTAGGGCAAAGACCC
ACATTTTCCATGGCAATGCATTCAATCGAGGTTTTTTGACGCTATCCTGT
CTCCAATCCTCACACCAAGTGGTGGCAAAGAGCGAAAGTGTGGAGCAGGA
GGCCGACGTCGCAGGTTGCTCTTTCAACGAGAGAAGACCACCTAGGAAAA
ACGTGGTCGCCATCCCATGAGCTCAAGCGGTGCACGAGGGAGGATGGGAT
CACCGCAATCAGATCGTGGCGATCCATCTGGCTACGGCACCGGTCACGGG
AGCCTGGCGCTGAGATCCTACGGGCCGATGAGCGGGTCGCGCGGGCCGCC
GGCCAGCGATCAACTGGGGCGGTCTGCGGGCGCGGGAGGCGGGTCTGCCA
GTCCCCCAAGTCGAGCTCGCCCCGGCGGCCTCCTCCTCCGCGGCGAGCCG
CCGGGCTCCCCACGCTTCGGAAACGTCAGAGATCGCGGCTTTGATAACCG
CGCCCCCGGCGGGTTCAGCAGCGGCTCTGGCGGCGCATTAGCTGGTGGTA
GTACCATCGGTGTGAGCGGAAGCGACAGAGGCGGCGGCGGCAGCAGCGGT
GGTGGTGGCGGCCGCTTTGGTCATGGCGGCGGTGGCGGCGGGGAAGGCAG
CCGCCGCGGCCGCCCTACTGTTGGGCGTTCCGGTGCTGGCCGGGGTGGTG
GCGGTCGCTGGGGTCGCACCACGGAGGGAAGCGGCGGCACCGGCGGCCTG
TCCACGTACGGCCCCGCCGCCTACTCCGAAACGCCGCCTCTGCCCAGCAG
CCGCGGCGGCGGCTACGCGGACCTCGCCGCGCGAGACGACAGCAGAGAGC
GTGACCGCGCTGACCGCCGCGACGACCGGCGCGGCAGCTTCGGCAGCGGC
GCCAGCTACAGTGGCGGTGGCGGCGGCTACAACGGCAACGGCGGCGGTAG
CTTCAGCTGCGGCGGCCCGCTTGCCGGCAGCGAATCGGGCTCCTTCCCAT
CCCGTGGTGGCGCTGGCGGCGCCGGCAGTTACGGCCCTCCTCCGGGCCGC
GATCTGGAGCGGGACCGTGAGCTCGACAGGGATCGAGACCGGGGGGGGCT
CCGCATGTTCTCCAGCGGTAGCATCAGTGGCGGCGGCAGCGGCGGCGGTG
GTGGTAGCGGCGGCAGCAGCGGCGGCGGCGGCGTTGGAGGCGGTGCTGGC
GGCAGCGAAGGGCCCGGCGGTGGCGGCGATAAGAGTCGCGGCCTTTCACG
ACCTTCGGGTTACGCTGCGATGGCGGACGATGGAAGAGACGACAGGGGCC
GAGAATACGATAGAGATCGCTCGTTGGACCGCGAAAGGGACCGCGACGTC
CCCCGCCGGGACAGCTCGCCGCCACCACCGCCGCCACCTTTCCAGCTGCC
GTTTCGTGCGGGACTGGGCTCGCCGCCGCAGTCACGGCCGGCACCTGATC
GCACCGGCGGCCCGGCGAATGCCGACCGCTTCGGCGGCCGGAGAGACAGC
GGCAGTGGCGGCGACGCGCCGCCAGGGCCGCCCTCCCGGCCGCCGCCGCC
GCCGACGCTGCAACCGGGCTCGTGGCTAAATTCACAGCGCGAGCCGGTGC
CGGCGTCGGCTTTACCGGCAACCGACGAGTTTGGCCGCATCCGCGACAGG
AGCCGCGACAACTGGGACGCCCGGGATGGCGACAGACCCGGCGGCGGCGC
CGGCGGCGCTGCGTCTGCACCGGGATCGGCATTTTTTCCTCTCGGTGGGA
GGGCTTCTTCTTTTAGCGCTCGCCTGTCGGCCCGAAGCGACGACCGTGGA
CCAAATTGGGGGGGCTTCGGGCCCGGTGGCGGCGGACCCGGAGGCGGCGG
CGGCGGTAGCGGCGGCGGCAGCGGCGACTTCCGTCGAGGCGGCAGCTTCG
GTGCCCGCGGCGGTTATGGTAGCTTGGGCGGCGGTTACGCGTCTTTGGTG
GACCGGGAGGACGAGCGCCAGCGTCCACCGACAGCCAGCGACGGCCGCAG
CTCGCCGAGAGCACGATCTGCGTCGCCGCCAGCGCGCGGCCGCGGCGACG
GTGCCGGCGGCGGTGGTGGCAGTGGCGGCGCCTCCTCTCCGCCAAGGCAT
GGTTTCTCGCCCCAGGACGGCGGCTTTCGACAACAGCACACCTCCAGCAG
CGGAAGCTTGCGCAGCCTTGGCGGCGGCAGCCTCAGTCGCGTCTCCAGTG
CGGAGAGGGCCGGTGGTGGTCTCCGTTACGGGGCCGCCCCGGCCGAAAGG
GCTGAGAAGCCCGCGCCTTCAGAGTCGGCCGCTGGAATGCCGCGCTCGAT
GACCGCGGGTGCAGTGCCGGCGGGGGCAGTGCCGCAGGCTCCGCCGCTCG
CGCTGCCGCCGAAGGCCGCCTCTGGTGGGGTGCCACCGGCGGCACCTTCG
GCTGCCCTGCGGCCTTCGGCGCCGTCAGCTGCAATATCGACCGTGCCGCC
AGCCTTGGCTTCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1784:1052..3517-

>mRNA_P-wetherbeei_contig1784.1.1 ID=mRNA_P-wetherbeei_contig1784.1.1|Name=mRNA_P-wetherbeei_contig1784.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2250bp|location=Sequence derived from alignment at P-wetherbeei_contig1784:1052..3517- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTCAAGCGGTGCACGAGGGAGGATGGGATCACCGCAATCAGATCG
TGGCGATCCATCTGGCTACGGCACCGGTCACGGGAGCCTGGCGCTGAGAT
CCTACGGGCCGATGAGCGGGTCGCGCGGGCCGCCGGCCAGCGATCAACTG
GGGCGGTCTGCGGGCGCGGGAGGCGGGTCTGCCAGTCCCCCAAGTCGAGC
TCGCCCCGGCGGCCTCCTCCTCCGCGGCGAGCCGCCGGGCTCCCCACGCT
TCGGAAACGTCAGAGATCGCGGCTTTGATAACCGCGCCCCCGGCGGGTTC
AGCAGCGGCTCTGGCGGCGCATTAGCTGGTGGTAGTACCATCGGTGTGAG
CGGAAGCGACAGAGGCGGCGGCGGCAGCAGCGGTGGTGGTGGCGGCCGCT
TTGGTCATGGCGGCGGTGGCGGCGGGGAAGGCAGCCGCCGCGGCCGCCCT
ACTGTTGGGCGTTCCGGTGCTGGCCGGGGTGGTGGCGGTCGCTGGGGTCG
CACCACGGAGGGAAGCGGCGGCACCGGCGGCCTGTCCACGTACGGCCCCG
CCGCCTACTCCGAAACGCCGCCTCTGCCCAGCAGCCGCGGCGGCGGCTAC
GCGGACCTCGCCGCGCGAGACGACAGCAGAGAGCGTGACCGCGCTGACCG
CCGCGACGACCGGCGCGGCAGCTTCGGCAGCGGCGCCAGCTACAGTGGCG
GTGGCGGCGGCTACAACGGCAACGGCGGCGGTAGCTTCAGCTGCGGCGGC
CCGCTTGCCGGCAGCGAATCGGGCTCCTTCCCATCCCGTGGTGGCGCTGG
CGGCGCCGGCAGTTACGGCCCTCCTCCGGGCCGCGATCTGGAGCGGGACC
GTGAGCTCGACAGGGATCGAGACCGGGGGGGGCTCCGCATGTTCTCCAGC
GGTAGCATCAGTGGCGGCGGCAGCGGCGGCGGTGGTGGTAGCGGCGGCAG
CAGCGGCGGCGGCGGCGTTGGAGGCGGTGCTGGCGGCAGCGAAGGGCCCG
GCGGTGGCGGCGATAAGAGTCGCGGCCTTTCACGACCTTCGGGTTACGCT
GCGATGGCGGACGATGGAAGAGACGACAGGGGCCGAGAATACGATAGAGA
TCGCTCGTTGGACCGCGAAAGGGACCGCGACGTCCCCCGCCGGGACAGCT
CGCCGCCACCACCGCCGCCACCTTTCCAGCTGCCGTTTCGTGCGGGACTG
GGCTCGCCGCCGCAGTCACGGCCGGCACCTGATCGCACCGGCGGCCCGGC
GAATGCCGACCGCTTCGGCGGCCGGAGAGACAGCGGCAGTGGCGGCGACG
CGCCGCCAGGGCCGCCCTCCCGGCCGCCGCCGCCGCCGACGCTGCAACCG
GGCTCGTGGCTAAATTCACAGCGCGAGCCGGTGCCGGCGTCGGCTTTACC
GGCAACCGACGAGTTTGGCCGCATCCGCGACAGGAGCCGCGACAACTGGG
ACGCCCGGGATGGCGACAGACCCGGCGGCGGCGCCGGCGGCGCTGCGTCT
GCACCGGGATCGGCATTTTTTCCTCTCGGTGGGAGGGCTTCTTCTTTTAG
CGCTCGCCTGTCGGCCCGAAGCGACGACCGTGGACCAAATTGGGGGGGCT
TCGGGCCCGGTGGCGGCGGACCCGGAGGCGGCGGCGGCGGTAGCGGCGGC
GGCAGCGGCGACTTCCGTCGAGGCGGCAGCTTCGGTGCCCGCGGCGGTTA
TGGTAGCTTGGGCGGCGGTTACGCGTCTTTGGTGGACCGGGAGGACGAGC
GCCAGCGTCCACCGACAGCCAGCGACGGCCGCAGCTCGCCGAGAGCACGA
TCTGCGTCGCCGCCAGCGCGCGGCCGCGGCGACGGTGCCGGCGGCGGTGG
TGGCAGTGGCGGCGCCTCCTCTCCGCCAAGGCATGGTTTCTCGCCCCAGG
ACGGCGGCTTTCGACAACAGCACACCTCCAGCAGCGGAAGCTTGCGCAGC
CTTGGCGGCGGCAGCCTCAGTCGCGTCTCCAGTGCGGAGAGGGCCGGTGG
TGGTCTCCGTTACGGGGCCGCCCCGGCCGAAAGGGCTGAGAAGCCCGCGC
CTTCAGAGTCGGCCGCTGGAATGCCGCGCTCGATGACCGCGGGTGCAGTG
CCGGCGGGGGCAGTGCCGCAGGCTCCGCCGCTCGCGCTGCCGCCGAAGGC
CGCCTCTGGTGGGGTGCCACCGGCGGCACCTTCGGCTGCCCTGCGGCCTT
CGGCGCCGTCAGCTGCAATATCGACCGTGCCGCCAGCCTTGGCTTCCGGC
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