mRNA_P-wetherbeei_contig1765.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1765.1.1
Unique NamemRNA_P-wetherbeei_contig1765.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1765.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1765contigP-wetherbeei_contig1765:630..4053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.2470877-CDS-P-wetherbeei_contig1765:629..7141683186122.2470877-CDS-P-wetherbeei_contig1765:629..714Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1765 630..714 -
1683186122.2689376-CDS-P-wetherbeei_contig1765:3934..40531683186122.2689376-CDS-P-wetherbeei_contig1765:3934..4053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1765 3935..4053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1765.1.1prot_P-wetherbeei_contig1765.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1765 630..4053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1765.1.1

>prot_P-wetherbeei_contig1765.1.1 ID=prot_P-wetherbeei_contig1765.1.1|Name=mRNA_P-wetherbeei_contig1765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
TPEPTPEATPAPTPEATPAPTPEDTPAMQTPAPTPAATPGPTPADTPAPT
PAQTPAPTPADTPAPTLA
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mRNA from alignment at P-wetherbeei_contig1765:630..4053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1765.1.1 ID=mRNA_P-wetherbeei_contig1765.1.1|Name=mRNA_P-wetherbeei_contig1765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3424bp|location=Sequence derived from alignment at P-wetherbeei_contig1765:630..4053- (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGGAGCCGACACCGGAAGCAACGCCAGCGCCGACACCGGAAGCAAC
GCCAGCGCCGACCCCGGAAGACACGCCGGCCATGCAAACGCCTGCGCCTA
CACCAGCGGCGACGCCAGGGTGTGTTTGTGATCTTGGTATTTGGGAGTTC
CGATATCAGGTTGCGGACTAGGGCATGCGATTTCGAAGCCCGCATTACGG
CAGAAGAGCTCCTTTCGGGACGCGGATCTTGGAGACCACCGCCCCTGTCA
AGCTCAGATTGGCCCACCCTTCCCTTTCGGCTCTTTCTGCTGCGACGTTG
TAGTCTGGGTTTTTCTGTGGTTTGCGCTTTCCATTTTTCTTTAGGGTACT
TCGCCTTCCAGCAATTGTCGGCGGTTGGAGGGCACCTGCCCCACTCAGTG
ACCTTTGCACAATTGCAGCTCGCCTGTAACTCGAGTTTATCGCTGCCTCC
CCCCCGTCGTTCTGTTCCCTGCAGCCCAACTCCCGGCGAACCCCCCGCGC
CGACGCCGGAAGCGACGCCGGCGCCGACGCCGGAAGACACACTGGTGCCG
ACGCCTGCGGAGACGCCCAGGTGTGTGTGGCGTGCGAATCAAACATCAAT
AAGGGAAGCTTGGTCAAGTCTGCTCTTTGGCTGCTCTTTTGTCTCCACAA
AGAAAAGCCTGTTCTCAGAGTTTTGTAGTATTCGCTGTTCCTTGCTGCCT
CTGCAGCCGCCTCCCATTCGTGTCGGGACGTCTGGACGGTGCTCACGTGC
CGTCCTCCTTCGCTGTCGGAATGTCGAAGCGATGCCCTCATGCCATCACA
TTTTGCCTCATGTGTCACTCTTTTTTGTCCGGCGCCTCTCCTTTCTCCCC
GCCGCTCGTTGCAGCCCGACTCCAGCGGAGACGCCTGCTCCGACGCTGAC
GGACACACCATCGCCGACCCCGGCTGAGACGCCGGCGCCTACGCTGGAGG
AGACGCCGAGGTGTGTTCTACAGTTTGAAAATTGCCCTATGAGGGCATGC
GGGTTTGGAGCTCCTTCTGGGGAGAAGAGCTCCTTTCGAGGACTTGATTC
TCGGAAAACGCCGCCCCTTTCAAGCTATATGGTTGGGTTGTGACCTTTGA
TTTTGGCATCTTCTTTTCTGTTTGGGATAGTCAATCTTTTCAACGATGTT
TGTACCTTCCACGATGTCAACGATGCTTGCTTCGGTTAAAGGTTGGCTTA
CAAGTGCTTGGCTTGGGTGCACCTTTTATTTTGTCTGCTCTGATGTTTAG
TCCTTTCTTTCGTTCCGGAGTTCACTTTGTGTGATGGAGTGGGCAATTTG
AGCTTTCCATTTCTCTTTGGGCTTCGCGGCCAGACTGCGCCACTCAGTGA
CCCTTTGCTCAACCGCATCATGCACGTCACTCGAATTTGCTGCTGCGTTT
CCACCGTTATCCTGCTCTTTCCCGCGCTGTTCCCAATTGCAGCCCAACGC
CGGCCAAGACCCCCTCGCCAACGCCGGAAGACACGCCGGCGCCGACGCCT
GCGGAGACGCCCGGGTACGTGTGGCGTGGCAACCGGATGTCGACTAGAAA
AGCTTGACCTTCATGTTTGAGTCTGGCTGAGGGGCCTATCGCTCTTCCTT
TCTGCCTCTGCAGGCGCCTCTCCGTCTTTTCCATCGTACGGAACGTCCAT
CTTGTCTCCCCATGGCGTCTTCGTTTGTTGTTGCGTGCGTTTTGTGCCGG
ACCATTGACAAAAGCACTCTGAAACCGACCCTTGACTGTACCGTTCTCTG
TGTGTCAAATACGCCTCGCTGTTCTCAAACCAACATTGCAGTCCGACGCC
GGCCGAGACACCGGCGCCGACACCGGCACAGACGCCGGCGCCGACTCTGG
CGGAGACGCCGAGGTGTGTTCTGCGGCATTGGTTTTTGGGGGTTCAGATA
TCAAAAGTCGCCGAATGGGGTATGCGATTTGGGATCCTTTAGGGCACAAG
AGGACTCTTCGGGTCGCAACTCATTGAAATCACCCCTTTTTTCGAAGCTG
CGGGCTCCTGGCGCATTGATTTTGGTGCAACCTTTCCGCGAAGGTGCGTC
AAGGTTGCTACTTGGTTCCCTTACCCTTAATCAGATTCCTTCGCTGTTGC
AAGAAACTTTGCATCCGTTAGCGCGTGGCTTATAAACGTTTTGGCCGTTG
ATGCATCGTTTGCTCTTTCTGCTCGGATGTTGATGTTAAATCCCTTTTTT
TGCCAGGGCGCCACGTTGTGTCAGGGCATGGGCAGGGTGGCCTTTCCGTC
TCTCTTCGGGGTCGTTTGCGTTCCAGCAGTTGCACTGTCGAATGTCATTT
GCACCCTTATTAACCATTTGCTCAACCTTAGCACACCTGCAATCTGGACG
TATCGCTGCGTTTCGTTTCCGCCCCTATCCCGCTCTGTTGCAGTCCGACT
TCTGGCGAAACCCCCGCGCCGATACCGGCCGAAACCCCATCGCCCACGCC
GGCACAGACGCCATCGCCGACTCCAGCGGAGACCCCCAGGTAAGGTGGCA
TGTCGAGGGCACATATGAAAGAAGTTGGGCCGACTAAAGGAGGTTTCAAC
CCAGATACTGGAGTTGAGCTGGACGGCCGTCGTCTTATTGTCTGCACTTT
GGGCACAAAAGAGTGCCCAAAACAAAGCTTGCTCTTACATGGCAGACATA
TTTTTAAATTTAATTGTGAGGTATGCTTTTCTCTGCTGCTTCTACTTCGT
TATCGCACAGAACGTTCAACCGATGCCTTCGTGCCGTAATCTTTTGACAC
GTGCGCTTTGTGCGGATCTGCTGACAAGGCGCCTATCGGAGGCTAAACCC
CGTGCTGTGCCACTGTGTTGGCCCGGTATCTCTCTTTTTCCCGCGGCTTC
TTGCAGCCCGACTCCGGCGGAAACGCCAGCACCAACACCGGCCGAGACCC
CAGCGCCGACTCCAGCGGGCACGCCCGCGCCAACGTCTGCGGAGACGCCC
AGGTACGGTGGCATGGTGAGAAGATATCTGCTACTCAAAAAAGGATTTGA
GCGATGAAAAGATGTTTGATTAAAAAGTTTGCGTCGGGCCCGATGATCTG
TCACGTTTTCTGCGCTTTGGGTACTCTCTTGCGCCGGAAAAAAATGCCTT
CCCTCGGATGGCTGACATATGTTTGGAATTTTGAGGTGTTCGCTTTTTCC
TTGCTACCTTCACAGCCGGCCGCCATCTTTCGTTGTCGGAGCGTCCAAGC
GATGGCCCTTTGTCCCGTCATCGTCTCTTGCCACCTGCGCATTGTGCTGG
ACTGCTGGCGAAACGTCTTTCGGAAGCTTACTTCTTGCTGTGCTGCTCTC
TTTGTCCGGCGCCTCTCTTGCCTCTGCCACTTCTTGCAGCCCGACTCCGG
CTGATACGCCAGCGCCAACGCCGGCACAAACACCGGCCCCGACACCGGCG
GACACGCCAGCTCCGACATTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1765:630..4053-

>mRNA_P-wetherbeei_contig1765.1.1 ID=mRNA_P-wetherbeei_contig1765.1.1|Name=mRNA_P-wetherbeei_contig1765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig1765:630..4053- (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGGAGCCGACACCGGAAGCAACGCCAGCGCCGACACCGGAAGCAAC
GCCAGCGCCGACCCCGGAAGACACGCCGGCCATGCAAACGCCTGCGCCTA
CACCAGCGGCGACGCCAGGCCCGACTCCGGCTGATACGCCAGCGCCAACG
CCGGCACAAACACCGGCCCCGACACCGGCGGACACGCCAGCTCCGACATT
GGCG
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