mRNA_P-wetherbeei_contig17611.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17611.2.1
Unique NamemRNA_P-wetherbeei_contig17611.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A835YS60_9STRA (1-cysPrx_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS60_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.490e-37
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 QTTLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPDN 273
            QTTL + D+DKRVRL+  YPA VG N+YE LRA+DA+QLATFHQV VPANWKEGEDVF+  +VP      MFPKG ++++PWFR+T +P +
Sbjct:   15 QTTLYLIDLDKRVRLMMQYPAVVGCNFYEALRAMDALQLATFHQVGVPANWKEGEDVFIGANVPHNMVADMFPKGHVELRPWFRITAKPTD 105          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: F0YNL2_AURAN (Thioredoxin domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNL2_AURAN)

HSP 1 Score: 123 bits (309), Expect = 5.110e-33
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    4 TTLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPD 270
            T +++ DIDKRVRL   YP T G+N+YEVLRA+D +QL+ FHQV+ PANW +GEDVF+ P +    A   FPKG+++ +PW+R TPQPD
Sbjct:  161 TLVVICDIDKRVRLTMQYPTTTGRNFYEVLRAVDTVQLSLFHQVATPANWNQGEDVFIGPKLSRVAAQSAFPKGMVEQRPWYRTTPQPD 249          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A6U1N900_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N900_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.260e-31
Identity = 50/87 (57.47%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   10 LLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPD 270
            + + D DKR+R++  YPA  G+N+YE+LRAIDAIQL+TFHQVS PANW++GEDVF+   + +  A  M+PKG ++I+ WFR+TPQPD
Sbjct:  199 VFLVDPDKRLRMIQLYPACAGRNFYEILRAIDAIQLSTFHQVSTPANWRQGEDVFIPVKITSTTANSMYPKGFLEIRNWFRLTPQPD 285          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A8J2SXT0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXT0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 8.520e-29
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    4 TTLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPD 270
            T +++ DIDKRV+    +P T G+N+YEVLR +DA QLA FHQV+ PANW +G DV+VAP +    A   FPKG+ + +PW+R TPQPD
Sbjct:  164 TLVILCDIDKRVKATWQHPTTCGRNFYEVLRTLDACQLALFHQVATPANWLQGRDVYVAPRLTKVAANEAFPKGVTEQRPWYRTTPQPD 252          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A7S2W997_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W997_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.020e-28
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    4 TTLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPD 270
            T + V DID+R+R +  YP T G+N+YE +R++DA+QL+ FHQV VPANW +GE+V+V P + +  A  MFPKG  ++  W+R TPQPD
Sbjct:  161 TLVTVIDIDRRIRQLQFYPKTTGRNFYETIRSLDALQLSLFHQVVVPANWMQGEEVYVHPGLSSVVASSMFPKGFNELNTWYRPTPQPD 249          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A1I7N7X9_9BACT (Alkyl hydroperoxide reductase subunit AhpC (Peroxiredoxin) n=3 Tax=Thermoflavifilum TaxID=1649506 RepID=A0A1I7N7X9_9BACT)

HSP 1 Score: 110 bits (274), Expect = 3.400e-28
Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   10 LLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPDN 273
            + + D DK++RL+  YP ++G+N+YE+LRA+DA+QL T + VS P +WKEGEDV +APS+P  EA + FPKG   +KP+ R TPQP+ 
Sbjct:  124 VFIIDPDKKIRLILVYPPSIGRNFYEILRALDALQLTTQYPVSTPVDWKEGEDVVIAPSLPDEEARKRFPKGFRVVKPYLRFTPQPNK 211          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A3N0W970_9FLAO (Peroxiredoxin n=1 Tax=Chryseobacterium sp. G0240 TaxID=2487066 RepID=A0A3N0W970_9FLAO)

HSP 1 Score: 109 bits (273), Expect = 4.810e-28
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    7 TLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPDN 273
            +LL+ D  K+VRL+  YPA+ G+N+ E+LR +D++QL   H V+ PANWK+GEDV V PS+   +A R+FPKG+ +IKP+ R TPQPD 
Sbjct:  123 SLLIIDPAKKVRLIITYPASTGRNFNEILRVLDSLQLVDRHNVATPANWKDGEDVIVPPSISTEDARRIFPKGVTEIKPYLRYTPQPDR 211          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: K9XMD8_STAC7 (Peroxidase n=2 Tax=Stanieria TaxID=102115 RepID=K9XMD8_STAC7)

HSP 1 Score: 109 bits (272), Expect = 6.970e-28
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    7 TLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPDN 273
            T+ V D DK++RL   YP + G+N+ E+LR ID++QL   + V+ P NWKEG+DV VAPS+P  EA + FPKG+ +IKP+ R+TPQPD 
Sbjct:  124 TVFVIDPDKKLRLTITYPPSTGRNFEEILRVIDSLQLTDKYSVATPVNWKEGDDVVVAPSIPTEEAKQKFPKGVTEIKPYLRMTPQPDK 212          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: UPI0005663911 (peroxiredoxin n=2 Tax=Pleurocapsales TaxID=52604 RepID=UPI0005663911)

HSP 1 Score: 108 bits (271), Expect = 9.850e-28
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    7 TLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPDN 273
            T+ V D  K++RL   YP + G+N+ EVLR ID++QL   +QV+ PANW+EGEDV VAP++P  EA + FPKG+ +IKP+ R+TPQPD 
Sbjct:  124 TVFVIDPQKKLRLTLTYPPSTGRNFDEVLRVIDSLQLTDNYQVATPANWEEGEDVVVAPTIPTEEAKQKFPKGVTEIKPYLRMTPQPDK 212          
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Match: A0A3N0W6Q4_9FLAO (Peroxiredoxin n=3 Tax=Chryseobacterium TaxID=59732 RepID=A0A3N0W6Q4_9FLAO)

HSP 1 Score: 108 bits (269), Expect = 1.920e-27
Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    7 TLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPANWKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPD 270
            +LL+ D DK+VRL+  YPA+ G+N+ E+LR +D++QL   H+V+ P NWKEG+DV + P+V   EA ++FPKG+ +IKP+ R TPQP+
Sbjct:  123 SLLIIDPDKKVRLIITYPASTGRNFDEILRVLDSLQLVDSHKVATPVNWKEGDDVIIPPTVSTEEARKIFPKGVREIKPYLRYTPQPN 210          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17611.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS60_9STRA6.490e-3762.641-cysPrx_C domain-containing protein n=1 Tax=Tribo... [more]
F0YNL2_AURAN5.110e-3356.18Thioredoxin domain-containing protein n=1 Tax=Aure... [more]
A0A6U1N900_9STRA1.260e-3157.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SXT0_9STRA8.520e-2953.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2W997_9STRA3.020e-2851.69Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A1I7N7X9_9BACT3.400e-2852.27Alkyl hydroperoxide reductase subunit AhpC (Peroxi... [more]
A0A3N0W970_9FLAO4.810e-2852.81Peroxiredoxin n=1 Tax=Chryseobacterium sp. G0240 T... [more]
K9XMD8_STAC76.970e-2852.81Peroxidase n=2 Tax=Stanieria TaxID=102115 RepID=K9... [more]
UPI00056639119.850e-2853.93peroxiredoxin n=2 Tax=Pleurocapsales TaxID=52604 R... [more]
A0A3N0W6Q4_9FLAO1.920e-2751.14Peroxiredoxin n=3 Tax=Chryseobacterium TaxID=59732... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17611contigP-wetherbeei_contig17611:577..1415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009042001.1
PFAMs1-cysPrx_C,AhpC-TSA
Model size276
Max annot lvl2759|Eukaryota
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.37e-34
EggNOG OGsCOG0450@1|root,KOG0854@2759|Eukaryota
EC1.11.1.15,1.11.1.7
Descriptionperoxiredoxin activity
Cds size276
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.3171303-CDS-P-wetherbeei_contig17611:576..7201683186121.3171303-CDS-P-wetherbeei_contig17611:576..720Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17611 577..720 -
1683186121.3314843-CDS-P-wetherbeei_contig17611:1018..10631683186121.3314843-CDS-P-wetherbeei_contig17611:1018..1063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17611 1019..1063 -
1683186121.3445365-CDS-P-wetherbeei_contig17611:1328..14151683186121.3445365-CDS-P-wetherbeei_contig17611:1328..1415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17611 1329..1415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17611.2.1prot_P-wetherbeei_contig17611.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17611 577..1415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17611.2.1

>prot_P-wetherbeei_contig17611.2.1 ID=prot_P-wetherbeei_contig17611.2.1|Name=mRNA_P-wetherbeei_contig17611.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
QTTLLVADIDKRVRLVSHYPATVGQNYYEVLRAIDAIQLATFHQVSVPAN
WKEGEDVFVAPSVPAAEAPRMFPKGLMDIKPWFRVTPQPDN*
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mRNA from alignment at P-wetherbeei_contig17611:577..1415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17611.2.1 ID=mRNA_P-wetherbeei_contig17611.2.1|Name=mRNA_P-wetherbeei_contig17611.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=839bp|location=Sequence derived from alignment at P-wetherbeei_contig17611:577..1415- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGACACTGCTGGTGGCAGACATCGACAAGCGGGTGCGGCTCGTCTC GCACTACCCGGCCACCGTGGGGCAAAACTACTATGAGGTGAGATAATTGA TAGTCTCAGGATTAAGAAGGGAAGTGAAGGAGCATCATAGATAAAAATTA TACCCAGTTATTGCAAGATGGGCGGCAGGGATGCGGGTGACCAAATTTGC GTTCTGTCAATTCCTTTTCACGCATCAGCTGTGAAGCCGCAGACGCACAG GGAACCGCTCAAGGAAGTCGTGCGCCTTTGGTGTGCACGTCGTTGATACT AGTTCGCCAGTCCCGCCTCGAACAAATCCGCATATTCTGTGGGAAAACGC AGGTTCTGCGAGCAATAGACGCAATACAGCTCGCCACATTCCACCAGGTA ATTTAGATTGGCTGGTTTTGGTTTCGACGGTTGCTCCCTCCCTCCCAAGA TGATATTCTTGCGCTTGTGCTGAAGAGCTACTGAGTGGTCATCCTGACCA TTTCAGCCATAGCCTTATAGACTGCCTGCCAGTACTGCCGCCATCACTGC TGGAGGGGCAAGGGACTGGTTCCACCGTCTTGTGAATTGTAACGGCCATC CTTGCGCCCTGCGCCCATTTTTTCCCCCGCCCGGACACTGCCAACGCCGC AAAAAACCGAAAAACGGAAAACGGAAAACGGAAAATGGAAAACAGGTGTC GGTGCCGGCTAACTGGAAGGAAGGCGAGGATGTCTTTGTGGCGCCGTCCG TCCCGGCCGCCGAAGCGCCGCGCATGTTCCCCAAGGGGCTGATGGACATT AAACCCTGGTTCCGGGTAACACCGCAGCCCGACAATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17611:577..1415-

>mRNA_P-wetherbeei_contig17611.2.1 ID=mRNA_P-wetherbeei_contig17611.2.1|Name=mRNA_P-wetherbeei_contig17611.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig17611:577..1415- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGACACTGCTGGTGGCAGACATCGACAAGCGGGTGCGGCTCGTCTC
GCACTACCCGGCCACCGTGGGGCAAAACTACTATGAGGTTCTGCGAGCAA
TAGACGCAATACAGCTCGCCACATTCCACCAGGTGTCGGTGCCGGCTAAC
TGGAAGGAAGGCGAGGATGTCTTTGTGGCGCCGTCCGTCCCGGCCGCCGA
AGCGCCGCGCATGTTCCCCAAGGGGCTGATGGACATTAAACCCTGGTTCC
GGGTAACACCGCAGCCCGACAATTAA
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