mRNA_P-wetherbeei_contig17446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17446.1.1
Unique NamemRNA_P-wetherbeei_contig17446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A7S2V2L3_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2L3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.230e-49
Identity = 83/127 (65.35%), Postives = 103/127 (81.10%), Query Frame = 1
Query:   25 NVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
             V+ VLLAGG+GSRMKADRPKQFLEL G+P+L ++I+L  S+  V Q++LV+DEQYR  +  ++  EPRL FADPGKERQDSV NGL+ V   A LVCVHDAARPLVT ++I+QV+ADA +HGAAVL
Sbjct:   66 KVSVVLLAGGVGSRMKADRPKQFLELLGRPVLDHTIDLFRSLRGVDQIILVLDEQYRPNYQSVSDEEPRLKFADPGKERQDSVCNGLSLVGEGASLVCVHDAARPLVTPENIHQVIADAEEHGAAVL 192          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A835YTP8_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.050e-49
Identity = 81/127 (63.78%), Postives = 104/127 (81.89%), Query Frame = 1
Query:   25 NVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            +VAA++LAGG+GSRMKA+ PKQFLELRGKP+L +S+EL  S+D + +++LVID+QYR++F  +   EPRLVFADPG ERQ+SV+NGL  V   A +VC+HDAARPLVT + I QVL DA +HGAAVL
Sbjct:   50 DVAAIILAGGVGSRMKANMPKQFLELRGKPVLQHSLELFRSLDGISRIILVIDQQYRDQFKTMQEEEPRLVFADPGIERQNSVFNGLQAVHEGASVVCIHDAARPLVTKECIYQVLRDAEEHGAAVL 176          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A7S1UCG6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCG6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.110e-48
Identity = 85/130 (65.38%), Postives = 101/130 (77.69%), Query Frame = 1
Query:   16 APTNVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            AP +VA VLLAGG+GSRMKADRPKQFL L GKP+L ++IEL   I+ V Q+VLV+DEQYR ++   AA + R VFADPGKERQDSV NGL++V   A LV VHDAARPLVT  +I  VL D ++HGAAVL
Sbjct:   46 APKDVAVVLLAGGVGSRMKADRPKQFLTLAGKPVLEHTIELFRGIEGVSQIVLVLDEQYRGEWKKFAAADERFVFADPGKERQDSVENGLSKVVDGASLVAVHDAARPLVTPAEIYNVLMDGVEHGAAVL 175          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A7S2DHR1_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHR1_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.530e-47
Identity = 77/127 (60.63%), Postives = 103/127 (81.10%), Query Frame = 1
Query:   25 NVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            NVA +LLAGG+GSRMKA++PKQFLEL GKP+L +++EL LS+D + ++VLVID +Y  +F  L A  P+L+FA PGKERQDSV+NGL ++  DA +VC+HDAARPL+T + I +VL D ++HGAAVL
Sbjct:   68 NVAVILLAGGVGSRMKANQPKQFLELLGKPVLMHTLELFLSLDGIARVVLVIDAKYESQFEPLQALNPKLIFAPPGKERQDSVFNGLQKINDDAPVVCIHDAARPLITPEAIYKVLRDGIEHGAAVL 194          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A6S9KIB4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KIB4_HETAK)

HSP 1 Score: 162 bits (409), Expect = 8.710e-47
Identity = 86/131 (65.65%), Postives = 101/131 (77.10%), Query Frame = 1
Query:   13 AAPTNVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            A+  +VA +LLAGG GSRMKADRPKQFL LRGKP+L +++EL L +  V QLVLV+ EQYR ++   A R+ R+VFADPGKERQDSV NGL  V A A LV VHDAARPLVT  +I QV+ADA  HGAAVL
Sbjct:   67 ASGADVAVILLAGGTGSRMKADRPKQFLGLRGKPVLDHTLELFLGLPYVSQLVLVLAEQYRGEYQPYADRDARVVFADPGKERQDSVSNGLGAVGAGAALVAVHDAARPLVTPGNIAQVVADARAHGAAVL 197          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A7S4UD44_GUITH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UD44_GUITH)

HSP 1 Score: 160 bits (405), Expect = 5.770e-46
Identity = 75/132 (56.82%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   10 QAAPTNVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            ++A  +V+ +LLAGG+GSRMKADRPKQFLEL GKPIL +S+EL + I  V ++V+VI  +YR+  A +  ++ R+ FA+PGKERQDSV+NGL + A D  L+C+HDAARPLVT ++I   + DA++HGAAVL
Sbjct:   86 ESAIDDVSVILLAGGVGSRMKADRPKQFLELEGKPILRHSLELFMKIQGVTRIVIVIAPEYRDSLADVTKKDARICFAEPGKERQDSVFNGLQETALDTSLICIHDAARPLVTEQEILSCMNDALEHGAAVL 217          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A7R9UV26_DIALT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UV26_DIALT)

HSP 1 Score: 155 bits (392), Expect = 2.010e-44
Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1
Query:   25 NVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAG-LAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
              AA++LAGG+GSRMKADRPKQ L+L GKP++ +S+EL L + S+ ++VLV+DEQYR   A   AA   RL FADPGKERQDSV NGLA V  DA L+CVHD+ARPLV+ +++ +V+ADA +HGAAVL
Sbjct:   55 RAAAIVLAGGVGSRMKADRPKQLLDLVGKPVMMHSLELFLGMPSITKVVLVLDEQYRPLVAPHKAAHGDRLAFADPGKERQDSVANGLALVGDDAPLICVHDSARPLVSVRNVLEVIADAAEHGAAVL 182          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A7S0EBA3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EBA3_9EUKA)

HSP 1 Score: 155 bits (391), Expect = 2.120e-44
Identity = 80/132 (60.61%), Postives = 98/132 (74.24%), Query Frame = 1
Query:   16 APTNVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYR--EKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            A  NVA VLLAGG GSRMKADRPKQFLELRGKP+L +SI+LLL +  +  LV+VI E++R  +  A  AAR+ R+ FADPGKERQDS WNGL  V  +  +V +HDAARPLVT   ++  +AD  +HGAAVL
Sbjct:   44 ASENVAVVLLAGGSGSRMKADRPKQFLELRGKPVLEHSIDLLLGVQQLTALVIVIAEEFRTMDFVAAAAARDSRVQFADPGKERQDSTWNGLEAVPKECTIVAIHDAARPLVTLDAVHTCIADGAEHGAAVL 175          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: W7TNV7_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV7_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.630e-43
Identity = 71/127 (55.91%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   25 NVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
             V+ VLLAGG+G RMKADRPKQF+EL GKP+L +S+E+  ++  V ++V+V+D+ YR++F+ L   +PR+VFADPGKERQDSV+NG +Q   DA +VC+HD+ARPLV+   +   L D   HGAAVL
Sbjct:   83 GVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVL 209          
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Match: A0A0G4G666_VITBC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G666_VITBC)

HSP 1 Score: 152 bits (385), Expect = 3.240e-43
Identity = 73/127 (57.48%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   25 NVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSIDSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAADAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL 405
            NV  +LLAGG+G RM ADRPKQFLEL GKP+L +S+EL L++  V+ +VLV+DE YR+ F G   R+ R+VFA PG+ERQDSVWNGL  +     +VC+HD+ARPLVT   + Q + DA  HGAAV+
Sbjct:   64 NVGVILLAGGVGKRMNADRPKQFLELMGKPVLEHSVELFLTLPGVKHIVLVLDEAYRDTFRG---RDERIVFAPPGEERQDSVWNGLQAMPEGVSVVCIHDSARPLVTQGTVLQCIRDANTHGAAVV 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V2L3_9STRA2.230e-4965.352-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A835YTP8_9STRA5.050e-4963.782-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7S1UCG6_9STRA3.110e-4865.38Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2DHR1_9STRA3.530e-4760.632-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A6S9KIB4_HETAK8.710e-4765.65Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4UD44_GUITH5.770e-4656.822-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7R9UV26_DIALT2.010e-4461.722-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7S0EBA3_9EUKA2.120e-4460.61Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
W7TNV7_9STRA1.630e-4355.912-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A0G4G666_VITBC3.240e-4357.482-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17446contigP-wetherbeei_contig17446:6..1316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX33502
Preferred nameCMS
PFAMsIspD
Model size405
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00991
KEGG ReactionR05633
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046490,GO:0050518,GO:0070567,GO:0071704,GO:0090407,GO:1901135,GO:1901576
Exons3
Evalue2.64e-47
EggNOG OGsCOG1211@1|root,2QUUE@2759|Eukaryota
Ec32 ortholog description4-diphosphocytidyl-2C-methyl-D-erythritol synthase, chloroplast precursor
Ec32 orthologEc-12_008050.1
EC2.7.7.60
DescriptionD-ribitol-5-phosphate cytidylyltransferase activity
Cds size405
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.8640797-CDS-P-wetherbeei_contig17446:5..441683186117.8640797-CDS-P-wetherbeei_contig17446:5..44Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17446 6..44 -
1683186117.8745208-CDS-P-wetherbeei_contig17446:760..9621683186117.8745208-CDS-P-wetherbeei_contig17446:760..962Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17446 761..962 -
1683186117.8817942-CDS-P-wetherbeei_contig17446:1152..13161683186117.8817942-CDS-P-wetherbeei_contig17446:1152..1316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17446 1153..1316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17446.1.1prot_P-wetherbeei_contig17446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17446 6..1316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17446.1.1

>prot_P-wetherbeei_contig17446.1.1 ID=prot_P-wetherbeei_contig17446.1.1|Name=mRNA_P-wetherbeei_contig17446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
LLIQAAPTNVAAVLLAGGIGSRMKADRPKQFLELRGKPILTYSIELLLSI
DSVRQLVLVIDEQYREKFAGLAAREPRLVFADPGKERQDSVWNGLAQVAA
DAELVCVHDAARPLVTSKDINQVLADAMKHGAAVL
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mRNA from alignment at P-wetherbeei_contig17446:6..1316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17446.1.1 ID=mRNA_P-wetherbeei_contig17446.1.1|Name=mRNA_P-wetherbeei_contig17446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1311bp|location=Sequence derived from alignment at P-wetherbeei_contig17446:6..1316- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTTATCCAGGCTGCGCCAACGAACGTGGCGGCAGTGTTACTTGCAGG CGGCATCGGCTCGCGGATGAAGGCGGACCGCCCAAAACAATTCCTGGAGC TGCGGGGCAAGCCCATCTTAACCTACAGCATTGAGCTGTTGCTAAGCATC GACAGCGTCCGCCAGTGAGCCGGTTTTCCCGCGTCCTTTCCACTTTTTTG CGATCGATTTCCTCTCCGTTCTTGCATGCAAAGAAAGTCTTTTGACGGCA GCGCCCTGCTTTCCGTGATGCAATAGGATCGTTGCCCCGCTGTGCTCCCA CTCAATAGTCACACAGTCCCGGCCCTTTTCGCCGCTTCTCTTCTGTCCGA ACAGGCTGGTGCTAGTCATCGACGAGCAGTACCGGGAAAAGTTCGCCGGG CTGGCGGCCCGGGAGCCGCGGCTGGTCTTTGCAGACCCGGGCAAGGAGCG TCAGGACTCTGTCTGGAACGGTCTGGCGCAGGTGGCGGCCGACGCGGAGC TCGTTTGCGTGCACGACGCCGCGCGGCCGCTCGTCACGTCCAAAGACATC AACCAGGTGGGGACGAAAAGCTTTTAAAAGTTGGTTTGTTTTCACTTGCC GCTTCGGTATCCGACAGATTTTCCCTTTTCTTTTCTTTTTCAACAAAGGG ACAATGGGATTTTCCAAGGGCTTTCGCCTAGCTAGATATGAGCATGGACA GCTTGCAATGATGAGAGAGGAATGGGGGGAAAGAACGGAAAATATATCAC ATACCATCCGGCTTCTGACAGGCGTCGTTGCAGAGTTTTCTGATAGTGGT CGATGGCGGTCGCGTACGGCAAAACGCCCACTTCGAATATAAAACGCCAG CAACTTTTTTCGAAAACCCTTTTTGGTTAATCGGTTGAACCATGGGTGGT TAAGGGGTATTTCCCACCCTAGACTTGCCCCCCTAACACGCCTGAATGAA TTCATCTTTGTGTAGATTACACTTTGTGGTAGAATAATTATTTGCATTTC TCGGATGGGTCATTGCAGTAATTTAGAGGGCAACCCCGACTTACGATCGT CTCTTTTGCTTCCGTCAACTCTCGTTTTTGCTCTTGGGATCAAGCATTCA ATAACGGGTGCCCCTAGCAGGCCACCATGCCAAAGAGATTTTGTGGACAG GTAGCTCAAATGAAGTTACAATACTCCGTTTTGCACATTTTCATTCCTGC TTCTGCTTCCCTGCGGCCACTTTCCTCGCCTCTGCCCACCCCCCCGCCCC GAACAAAATGCCCGGAATGCAGGTGCTGGCGGACGCGATGAAGCACGGCG CGGCGGTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17446:6..1316-

>mRNA_P-wetherbeei_contig17446.1.1 ID=mRNA_P-wetherbeei_contig17446.1.1|Name=mRNA_P-wetherbeei_contig17446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig17446:6..1316- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTTATCCAGGCTGCGCCAACGAACGTGGCGGCAGTGTTACTTGCAGG
CGGCATCGGCTCGCGGATGAAGGCGGACCGCCCAAAACAATTCCTGGAGC
TGCGGGGCAAGCCCATCTTAACCTACAGCATTGAGCTGTTGCTAAGCATC
GACAGCGTCCGCCAGCTGGTGCTAGTCATCGACGAGCAGTACCGGGAAAA
GTTCGCCGGGCTGGCGGCCCGGGAGCCGCGGCTGGTCTTTGCAGACCCGG
GCAAGGAGCGTCAGGACTCTGTCTGGAACGGTCTGGCGCAGGTGGCGGCC
GACGCGGAGCTCGTTTGCGTGCACGACGCCGCGCGGCCGCTCGTCACGTC
CAAAGACATCAACCAGGTGCTGGCGGACGCGATGAAGCACGGCGCGGCGG
TGCTG
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