mRNA_P-wetherbeei_contig17397.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17397.2.1
Unique NamemRNA_P-wetherbeei_contig17397.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A7C4XMS9_9HYPH (NUDIX domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XMS9_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 5.070e-44
Identity = 76/133 (57.14%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREAHRR 438
            WPRAAASAAIFRDG +L+ ER SGP  G WSLPGG IEPGETA AAA+RE+ EET +   + GL DV +VI  + GGAL  HY+I VYYG+   G P AA D   ARFV L +L  Y +T+G + +I  A  R
Sbjct:   11 WPRAAASAAIFRDGEVLLVERASGPSAGLWSLPGGHIEPGETAAAAALREVTEETGVSAELLGLADVRDVIRRDKGGALVAHYVIAVYYGVWRAGAPLAAGDSRAARFVRLSDLAAYAMTEGTVEVIVAAAER 143          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A1Q3K1L9_9PROT (Nudix hydrolase domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3K1L9_9PROT)

HSP 1 Score: 149 bits (376), Expect = 2.350e-43
Identity = 75/131 (57.25%), Postives = 90/131 (68.70%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREAH 432
            WPR AASA IFR G +LI ERG G   G WSLPGG IEPGE A AAA+RE+ EET L V I GLVDVH+ I  +G G L  HY++ V++G C  G P AATD+ DARFV + E+  YR+T GA  + R A+
Sbjct:   10 WPRPAASAVIFRGGNVLIVERGKGALPGTWSLPGGHIEPGEKARAAAIRELHEETGLAVAIEGLVDVHDGIFRDGEGTLRAHYVLAVFWGYCEEGAPVAATDVRDARFVPVGEVDGYRMTPGAQSVSRCAY 140          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A2D7FHH6_9HYPH (Nudix hydrolase domain-containing protein n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FHH6_9HYPH)

HSP 1 Score: 149 bits (375), Expect = 3.130e-43
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREA 429
            WP+AAASAAIFRD ++LI ERG G   G WSLPGG IEPGE A+ AA RE+ EET +   I GLVD+++VI  +  G L   Y++CVY+G    GEP+AATD  DARFVT +EL +Y+LT GA   I++A
Sbjct:   12 WPKAAASAAIFRDDKVLIVERGKGSMTGVWSLPGGHIEPGERAIDAASREVAEETGIATHIEGLVDINDVIXHHDDGTLRAXYVLCVYFGHWQSGEPEAATDARDARFVTFEELIQYKLTPGAKTFIQKA 141          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A2W4KW05_9PROT (Nudix hydrolase domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KW05_9PROT)

HSP 1 Score: 147 bits (371), Expect = 1.350e-42
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREAHR 435
            WP+AAASA IFR   +L+ ERG  P  G WSLPGG IEPGE A  AA RE+ EET +   + GLVDVH+VI  N  G L  HY++ V+YG    GEP AA+D  +A FV LDEL +Y LTDGA  II+ AHR
Sbjct:   14 WPKAAASAVIFRGDSVLLVERGKPPVSGVWSLPGGHIEPGERAADAARREVTEETGITADLLGLVDVHDVILRNQSGDLRAHYVLAVFYGRWKAGEPSAASDCRNAGFVPLDELGKYHLTDGAERIIQAAHR 145          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A2W4QEX8_9PROT (NUDIX hydrolase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QEX8_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.370e-39
Identity = 74/147 (50.34%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    1 ISSQPQEGPEMIAWPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREAHRRL 441
            +S++   G +   WPRAAASAAIFR   +L+ +R + P  G WSLPGG IEPGE A  AA+RE+ EET +   I GL D H+ I     G L  HY++ V+YG    GEP AATD +DARFV ++E+  Y LTDGA  II  A+R+L
Sbjct:    1 MSTEASTGQDERRWPRAAASAAIFRGDAVLLVKR-TKPVSGVWSLPGGHIEPGERAREAALREVMEETGVTAEILGLADTHDAIIREKDGTLRAHYLLAVFYGRWIAGEPVAATDCADARFVPVEEIGSYPLTDGAQRIIERAYRKL 146          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A7C2M0Y7_9HYPH (NUDIX domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2M0Y7_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 2.120e-39
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIR 423
            WPRAAASAA+FR G +L+ +RG G   G WSLPGG IEPGE A AAA RE+REET+++V I GL+D+H VI    GG +  HY+I V++G    GEP      S ARFV L++L  Y LT GA  +IR
Sbjct:   14 WPRAAASAAVFRAGTVLLVQRGQGAFAGSWSLPGGHIEPGEAARAAAAREVREETAVEVEIGGLIDIHEVILRRAGGEVGVHYLIAVFWGRWRAGEPAPGPAESAARFVRLEDLHGYSLTGGAAALIR 141          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A849TF33_9HYPH (NUDIX hydrolase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TF33_9HYPH)

HSP 1 Score: 125 bits (315), Expect = 3.670e-34
Identity = 63/131 (48.09%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPG-EPQAATDISDARFVTLDELPRYRLTDGALPIIREA 429
            WPRAAASA +FR   +L+ ERG    +G WSLPGG IEPGE A  AA RE+ EET++   + GLVDVH+VI     G+L  HY++ VY+G    G +P    D  DARF   DE+    LTDG    +  A
Sbjct:   12 WPRAAASAVVFRGDEVLLVERGKSAPRGLWSLPGGHIEPGEKARDAAKREVMEETAMAAELKGLVDVHDVIFRKSDGSLAAHYVLAVYWGWTHDGHDPVRGDDARDARFYRFDEIASLNLTDGTAEFVERA 142          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A109BAL6_HYPSL (ADP-ribose pyrophosphatase n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BAL6_HYPSL)

HSP 1 Score: 124 bits (311), Expect = 2.950e-33
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREA 429
            WPRAAASA +FR   +L+ ERGS P  G+WSLPGG IE GETA  AA RE  EET L   + GL  V++VI  +  G +  HY+I  Y+G    G+P+ A+D+  A FV LD+L   RLT+G   +I +A
Sbjct:   23 WPRAAASAVLFRGESVLLVERGSDPDAGHWSLPGGTIEAGETAEEAARREAHEETGLYGHMEGLAGVYDVIDRDDNGNVVLHYVIACYFGSAVDGQPRPASDVRQAEFVALDKLQDLRLTNGTRCVIEKA 152          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: A0A6I0EAF6_HYPSQ (NUDIX hydrolase n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EAF6_HYPSQ)

HSP 1 Score: 122 bits (305), Expect = 1.380e-32
Identity = 61/135 (45.19%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREAHRRLG 444
            WPRA ASA +FR   +L+ ERG  P +G WSLPGG IE GE A   A RE+REE  L+  I GL  V+++I     G +  HY++  Y+G    G+P+A  D  DARF  LD L    +T G   +I EA R L 
Sbjct:   14 WPRAGASAVLFRGSTVLLVERGEAPAQGLWSLPGGSIEAGEPAEDTARREVREEAGLEAHIVGLAGVYDIIEHESDGTVLLHYVLATYFGRAAEGDPRAGGDARDARFFPLDALEDLPMTPGTRFVIAEAWRLLA 148          
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Match: UPI0009310877 (NUDIX hydrolase n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009310877)

HSP 1 Score: 122 bits (305), Expect = 1.380e-32
Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   40 WPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAAVREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEPQAATDISDARFVTLDELPRYRLTDGALPIIREAHRRLG 444
            WPRAAASA +FR   +L+  R  G   G WSLPGG I  GETA AAA RE+ EET L   I GL  V+++I  N GG +   Y+I  YYG    GEP+A  D+ DARF  LD      LT+G   +I +A R L 
Sbjct:   14 WPRAAASAVLFRGEAVLLVLRDKGHAAGMWSLPGGAIHAGETAEAAARREVEEETGLIAHIEGLAGVYDLIDRNEGGEVVLDYVIATYYGRADDGEPRAKDDVRDARFFALDAAKDLELTEGTYFVIEQAWRLLA 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17397.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XMS9_9HYPH5.070e-4457.14NUDIX domain-containing protein n=1 Tax=Hyphomicro... [more]
A0A1Q3K1L9_9PROT2.350e-4357.25Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A2D7FHH6_9HYPH3.130e-4356.92Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A2W4KW05_9PROT1.350e-4256.82Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A2W4QEX8_9PROT1.370e-3950.34NUDIX hydrolase n=1 Tax=Proteobacteria bacterium T... [more]
A0A7C2M0Y7_9HYPH2.120e-3954.69NUDIX domain-containing protein n=1 Tax=Hyphomicro... [more]
A0A849TF33_9HYPH3.670e-3448.09NUDIX hydrolase n=1 Tax=Hyphomicrobiaceae bacteriu... [more]
A0A109BAL6_HYPSL2.950e-3349.23ADP-ribose pyrophosphatase n=2 Tax=Hyphomicrobium ... [more]
A0A6I0EAF6_HYPSQ1.380e-3245.19NUDIX hydrolase n=1 Tax=Hyphomicrobium sp. TaxID=8... [more]
UPI00093108771.380e-3248.15NUDIX hydrolase n=1 Tax=Hyphomicrobium sp. NDB2Met... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17397contigP-wetherbeei_contig17397:573..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121949.AQXT01000002_gene1733
PFAMsNUDIX
Model size456
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.7e-27
EggNOG OGsCOG1051@1|root,COG1051@2|Bacteria,1MZHT@1224|Proteobacteria,2VEZJ@28211|Alphaproteobacteria
DescriptionBelongs to the Nudix hydrolase family
Cds size426
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.3307514-CDS-P-wetherbeei_contig17397:572..9981683186116.3307514-CDS-P-wetherbeei_contig17397:572..998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17397 573..998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.343314-UTR-P-wetherbeei_contig17397:998..10281683186116.343314-UTR-P-wetherbeei_contig17397:998..1028Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17397 999..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17397.2.1prot_P-wetherbeei_contig17397.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17397 573..998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17397.2.1

>prot_P-wetherbeei_contig17397.2.1 ID=prot_P-wetherbeei_contig17397.2.1|Name=mRNA_P-wetherbeei_contig17397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MIAWPRAAASAAIFRDGRILIAERGSGPRKGYWSLPGGKIEPGETAMAAA
VREIREETSLDVTICGLVDVHNVIGTNGGGALTHHYIICVYYGMCGPGEP
QAATDISDARFVTLDELPRYRLTDGALPIIREAHRRLGLPR*
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mRNA from alignment at P-wetherbeei_contig17397:573..1028-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17397.2.1 ID=mRNA_P-wetherbeei_contig17397.2.1|Name=mRNA_P-wetherbeei_contig17397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig17397:573..1028- (Phaeothamnion wetherbeei SAG_119_79)
ATCAGCTCCCAGCCGCAGGAGGGTCCGGAGATGATCGCGTGGCCGCGCGC CGCCGCCAGCGCCGCTATATTCCGCGACGGCCGCATCCTGATCGCGGAGC GCGGCAGTGGACCGCGCAAGGGCTATTGGAGCCTGCCGGGCGGCAAGATC GAACCCGGCGAGACCGCCATGGCGGCCGCGGTTCGCGAAATTCGCGAGGA GACTAGCCTCGACGTAACGATCTGCGGCCTCGTCGACGTCCACAACGTGA TTGGAACCAACGGTGGCGGCGCACTCACGCATCACTACATAATCTGCGTC TACTATGGCATGTGTGGTCCAGGCGAACCGCAAGCGGCGACCGACATCTC GGACGCGCGCTTCGTCACCCTGGACGAGTTGCCGCGGTATCGACTGACCG ATGGAGCCCTGCCGATCATCCGCGAAGCGCACCGGCGGCTCGGCTTGCCA AGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17397:573..1028-

>mRNA_P-wetherbeei_contig17397.2.1 ID=mRNA_P-wetherbeei_contig17397.2.1|Name=mRNA_P-wetherbeei_contig17397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig17397:573..1028- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGCGTGGCCGCGCGCCGCCGCCAGCGCCGCTATATTCCGCGACGG
CCGCATCCTGATCGCGGAGCGCGGCAGTGGACCGCGCAAGGGCTATTGGA
GCCTGCCGGGCGGCAAGATCGAACCCGGCGAGACCGCCATGGCGGCCGCG
GTTCGCGAAATTCGCGAGGAGACTAGCCTCGACGTAACGATCTGCGGCCT
CGTCGACGTCCACAACGTGATTGGAACCAACGGTGGCGGCGCACTCACGC
ATCACTACATAATCTGCGTCTACTATGGCATGTGTGGTCCAGGCGAACCG
CAAGCGGCGACCGACATCTCGGACGCGCGCTTCGTCACCCTGGACGAGTT
GCCGCGGTATCGACTGACCGATGGAGCCCTGCCGATCATCCGCGAAGCGC
ACCGGCGGCTCGGCTTGCCAAGATGA
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