mRNA_P-wetherbeei_contig17336.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17336.1.1
Unique NamemRNA_P-wetherbeei_contig17336.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: W7T245_9STRA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T245_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.270e-35
Identity = 79/139 (56.83%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   25 EDLAARGMLPNAVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESG--------TVLKIVLLSSIGASRP 417
            E L  R +  N VLVVGATG+TGQWV   L+ KGF+VR FVRNL KAE+L+G DGS  D+  G+V+D A+  EA  G  AV+YCAGSR I G N+FQQVD  GV N V+AA+ SG        +V K +LLSSIG SRP
Sbjct:  152 ERLEVRALRDNPVLVVGATGKTGQWVVTDLLSKGFSVRAFVRNLDKAEDLFGWDGSNLDVFEGNVKDLASLTEATRGALAVIYCAGSREIIGPNAFQQVDGLGVENAVKAAQLSGGEEPGSEPSVRKFILLSSIGVSRP 290          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A835Z8T4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8T4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.130e-34
Identity = 71/106 (66.98%), Postives = 81/106 (76.42%), Query Frame = 1
Query:   19 AREDLAARGMLPNAVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGV 336
            A E LA   M PNAVL+ GATGETGQW+ L L+ KGFN RLF R+L KAE+++GPDG+  DIVVGDVRD  A  EAAAGCQA VYCAGSR+  GGNSF+Q D  GV
Sbjct:  128 AEESLAQATMKPNAVLICGATGETGQWITLDLLGKGFNCRLFARDLAKAEDMFGPDGATVDIVVGDVRDKDAMMEAAAGCQAAVYCAGSRSALGGNSFKQGDGFGV 233          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A6S9JRY6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JRY6_HETAK)

HSP 1 Score: 128 bits (321), Expect = 8.240e-33
Identity = 78/143 (54.55%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    1 DAEVRE-----AREDLAARGMLPNAVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCA-GSRNIFGGNSFQQVDFEGVVNCVEAARESGTVLKIVLLSSIGAS 411
            D EV E     A E LA   + PNA+LV+GATG TGQWV LKL++KGFN+RLF R+L +AE+ +GPDG+ GDI +GD       A AAAG QAVV  A G R  FG  +F Q + EGV   V A R +GTV KIVL+S  GAS
Sbjct:  105 DDEVAEMSRLGAEEALAEAPLKPNAILVLGATGATGQWVVLKLLDKGFNLRLFSRDLGRAEQAFGPDGANGDIFLGDAAAEEDLALAAAGAQAVVAVALGGRGFFGRPTFGQKEAEGVARLVSACRATGTVKKIVLMSETGAS 247          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A7X3Y2N9_9CHLR (SDR family oxidoreductase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7X3Y2N9_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 2.600e-15
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   49 LPNAVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESGTVLKIVLLSSIG 405
            +P+  +V GA    G  V  KL+++G NVR FVRN RK  E++G   + G I VGD+ D AA  EAA G   V+   G++  F     ++VD++GV   V AA E G + + VL+SSIG
Sbjct:    1 MPDTYMVAGAASGVGMHVTRKLLDRGENVRAFVRNGRKLREIFGTPDNLG-IFVGDIADHAAAFEAAEGAHYVISTVGAK--FPDGEPERVDYQGVHTLVNAAAEHGHIRQFVLVSSIG 116          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A6T6BC83_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6BC83_9RHOD)

HSP 1 Score: 81.3 bits (199), Expect = 2.810e-15
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   52 PNAVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRN------IFGG--NSFQQVDFEGVVNCVEAARESGTVLKIVLLS 396
            PN V+VVGA G  G+WV LKL++ GFNVR+ V +L KAE  +GPDG+  DI+ GDVR+A    EA  G  AVV      +      +FG   N   +VD EGV   + AA E+    + +L+S
Sbjct:  116 PNPVVVVGALGRLGEWVALKLMDAGFNVRILVPSLIKAESTFGPDGANLDILEGDVRNAVWVTEATKGASAVVCVIDHYSRPNFWRMFGSTENQTSRVDQEGVP-ILAAAAEAAGAKRFILVS 237          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A533U229_CHLSQ (SDR family oxidoreductase n=1 Tax=Chlorobium sp. TaxID=1095 RepID=A0A533U229_CHLSQ)

HSP 1 Score: 77.0 bits (188), Expect = 2.110e-14
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   43 GMLPNAVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESG 369
            G+    VLVVGATG++GQWV  +L+  G  VR+F R+  KA+ L+G +G   +IV G ++ +A    A AGC AV+   GS  + G +S  +VD +GV+  V+ A+ +G
Sbjct:    5 GLYKGKVLVVGATGKSGQWVVKRLLHYGVPVRVFSRDREKAQGLFG-EGV--EIVTGKIQSSADIERAVAGCSAVISALGSSAVTGESSPGEVDRDGVIRLVDEAKRAG 110          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: Q7NFP0_GLOVI (Gll3484 protein n=2 Tax=Gloeobacter TaxID=33071 RepID=Q7NFP0_GLOVI)

HSP 1 Score: 75.5 bits (184), Expect = 7.570e-14
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   58 AVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESGTVLKIVLLSSIGASR 414
            ++LVVGATG+TGQ +  KL  +    R+  R+  KA E++G DG+  ++V GDV    +   A  G + +    G+R  FG N  QQVD+EG  N V AAR +G V +++L+SS+  SR
Sbjct:    2 SILVVGATGQTGQQIVKKLRAQSMAPRVLARSRAKAREVFG-DGT--EVVEGDVLKTDSLGPALNGVETIFCATGTRTGFGANGAQQVDYEGTRNLVYAARRAG-VGRLILVSSLCVSR 116          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: UPI001999FB68 (SDR family oxidoreductase n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI001999FB68)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-12
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   58 AVLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESGTVLKIVLLSSIGASR 414
            +VLVVGATG TGQ +  +L+ +    R+ VR+  KA E+ G   +  ++ VGDV   A      AG + +    G+R  FG N  QQVD+EG VN V+AAR +G V   +L+SS+  SR
Sbjct:    2 SVLVVGATGLTGQQIVKQLLPET-PPRVLVRDATKAREVLG---NSVELFVGDVLQPATLGPTLAGVKTIFCATGTRTGFGANGAQQVDYEGTVNLVDAARSAG-VEHFILVSSLCVSR 115          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A533T9I7_CHLSQ (SDR family oxidoreductase n=1 Tax=Chlorobium sp. TaxID=1095 RepID=A0A533T9I7_CHLSQ)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-12
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   61 VLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESG 369
            VLVVGATG+TGQWV  +L+  G  V++F R   KA  ++G      +I  G ++ AA   EA  GC AV+   GS ++ G +S   VD +GV+  V+ A  +G
Sbjct:   11 VLVVGATGKTGQWVVKRLLHYGVPVKVFSREREKAVGMFGESV---EIATGKIQSAADIREAVKGCDAVISALGSSSVTGESSPADVDRDGVIRLVDEAANTG 110          
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Match: A0A2G4IM33_9PROT (NAD(P)-bd_dom domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2G4IM33_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 6.780e-12
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   61 VLVVGATGETGQWVCLKLIEKGFNVRLFVRNLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFGGNSFQQVDFEGVVNCVEAARESGTVLKIVLLSS 399
            VLV GATGETG +V   L EKGF VR  VR+ +KA+     +G   + + GDVR+ A   EA  G    V   GSR   G N+F+ +D+ G  N ++AA+ +G V   VL++S
Sbjct:   26 VLVAGATGETGIYVVRALSEKGFAVRGLVRDTQKAKS---QNGELAEWIAGDVRNPAQLLEAFKGVDYAVSAIGSREKDGPNNFENIDWLGNRNLMDAAKAAG-VKHFVLMTS 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17336.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T245_9STRA1.270e-3556.83NAD(P)-bd_dom domain-containing protein n=2 Tax=Mo... [more]
A0A835Z8T4_9STRA1.130e-3466.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9JRY6_HETAK8.240e-3354.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7X3Y2N9_9CHLR2.600e-1542.02SDR family oxidoreductase n=1 Tax=Dehalococcoidia ... [more]
A0A6T6BC83_9RHOD2.810e-1543.90Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A533U229_CHLSQ2.110e-1441.28SDR family oxidoreductase n=1 Tax=Chlorobium sp. T... [more]
Q7NFP0_GLOVI7.570e-1441.18Gll3484 protein n=2 Tax=Gloeobacter TaxID=33071 Re... [more]
UPI001999FB681.060e-1242.02SDR family oxidoreductase n=1 Tax=Gloeobacterales ... [more]
A0A533T9I7_CHLSQ1.180e-1240.78SDR family oxidoreductase n=1 Tax=Chlorobium sp. T... [more]
A0A2G4IM33_9PROT6.780e-1242.48NAD(P)-bd_dom domain-containing protein n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17336contigP-wetherbeei_contig17336:253..1373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX53039
PFAMsNAD_binding_10
Model size438
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.7e-22
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size438
COG categoryGM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.5922024-CDS-P-wetherbeei_contig17336:252..3721683186114.5922024-CDS-P-wetherbeei_contig17336:252..372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17336 253..372 -
1683186114.6048853-CDS-P-wetherbeei_contig17336:698..8541683186114.6048853-CDS-P-wetherbeei_contig17336:698..854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17336 699..854 -
1683186114.612553-CDS-P-wetherbeei_contig17336:1211..13731683186114.612553-CDS-P-wetherbeei_contig17336:1211..1373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17336 1212..1373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17336.1.1prot_P-wetherbeei_contig17336.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17336 253..1373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17336.1.1

>prot_P-wetherbeei_contig17336.1.1 ID=prot_P-wetherbeei_contig17336.1.1|Name=mRNA_P-wetherbeei_contig17336.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
DAEVREAREDLAARGMLPNAVLVVGATGETGQWVCLKLIEKGFNVRLFVR
NLRKAEELWGPDGSCGDIVVGDVRDAAAFAEAAAGCQAVVYCAGSRNIFG
GNSFQQVDFEGVVNCVEAARESGTVLKIVLLSSIGASRPAAAPGGA
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mRNA from alignment at P-wetherbeei_contig17336:253..1373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17336.1.1 ID=mRNA_P-wetherbeei_contig17336.1.1|Name=mRNA_P-wetherbeei_contig17336.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1121bp|location=Sequence derived from alignment at P-wetherbeei_contig17336:253..1373- (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGAAGTGCGGGAGGCGCGGGAGGACCTGGCGGCGCGCGGCATGCT GCCGAACGCGGTGCTGGTGGTAGGGGCGACCGGCGAGACGGGGCAGTGGG TGTGTCTGAAGCTCATTGAAAAAGGATTTAACGTCCGCCTCTTCGTGAGA AATCTGCGCAAGGTGAGAGGGGCAGAAAAGCAGGGTGTTTGGGGGCGGGG ATGGATGGCGGTGGCTGCGGGTTGGGTCGCTACTGATGGCCGCTATTCAC GGTCCCCGATATTGCTTGTTGCGACGAGCAGCCATCTTTCCAATCACACT GCTTCTTTGCGCTTCCCTCTTTGTAATTACCTGCGGCCGCTATGCCATCG TCTCGTTCAGCAAACGTCTCATTCGCTTTCGGCTGCCGCGGCTTCGATTT GTCGCCCGCAATTCCTTTCCTGCTCCGAAACACGGCGAGACGACACCGCG GCGGCACAACGTTACGGTGGCGGCGCGGCGGCGGTTTCTGCGGGGAATGG TGGCATGGGCGAATGGTAGGCGGAGGAGCTGTGGGGTCCCGACGGTTCGT GCGGCGACATTGTGGTGGGCGATGTGCGCGACGCCGCGGCGTTTGCGGAG GCCGCGGCGGGCTGCCAGGCCGTCGTCTACTGCGCGGGATCGCGCAACAT CTTTGGGGGGAACAGCTTCCAGCAGGTGTGGTGCAGTAAAGGACGGGCGG CTCGGTATAGGGGACGGGGGAGGGAAGGCTGTGAATTGCGGTGAAGTACG ACTGCTAGGTTTTGCGCCTTTTGGGGAGCTCGTATTGTTGTTGCGGTTTT ACAATGTGTGGAAGTCGACTCTTTCCCTGCTAATGAAACCATTCAGCGAG CCAGCGATTACTTCGCAGCAGACGGCTCGGCTAGAATGTTAGCGGCCTCG AAGCGATTCTCCCCTCTCTATGTTTCCGCCACCGCCCGTCCCCACCGGTA TCAAACTGCACCGACGCCGCCCGCCCGTGGCGCCGGCATCTGCATCTCCA GGTGGACTTTGAAGGGGTGGTGAACTGCGTTGAGGCGGCGCGGGAGTCAG GCACAGTACTGAAGATCGTGCTGCTGTCGTCCATCGGGGCGTCGCGGCCC GCGGCGGCGCCCGGCGGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17336:253..1373-

>mRNA_P-wetherbeei_contig17336.1.1 ID=mRNA_P-wetherbeei_contig17336.1.1|Name=mRNA_P-wetherbeei_contig17336.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig17336:253..1373- (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGAAGTGCGGGAGGCGCGGGAGGACCTGGCGGCGCGCGGCATGCT
GCCGAACGCGGTGCTGGTGGTAGGGGCGACCGGCGAGACGGGGCAGTGGG
TGTGTCTGAAGCTCATTGAAAAAGGATTTAACGTCCGCCTCTTCGTGAGA
AATCTGCGCAAGGCGGAGGAGCTGTGGGGTCCCGACGGTTCGTGCGGCGA
CATTGTGGTGGGCGATGTGCGCGACGCCGCGGCGTTTGCGGAGGCCGCGG
CGGGCTGCCAGGCCGTCGTCTACTGCGCGGGATCGCGCAACATCTTTGGG
GGGAACAGCTTCCAGCAGGTGGACTTTGAAGGGGTGGTGAACTGCGTTGA
GGCGGCGCGGGAGTCAGGCACAGTACTGAAGATCGTGCTGCTGTCGTCCA
TCGGGGCGTCGCGGCCCGCGGCGGCGCCCGGCGGCGCG
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