mRNA_P-wetherbeei_contig17300.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17300.1.1
Unique NamemRNA_P-wetherbeei_contig17300.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17300.1.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 7.160e-56
Identity = 174/458 (37.99%), Postives = 233/458 (50.87%), Query Frame = 1 
Query:    1 TPDATRVAFAVHAYGKDHSA--------PAFAAEAEALSKTMTRKTQHDVAKVVDDRSLFDSDYGAAAADDKTSDKIRRDVKADTPDETRVAFAVHAYGKDDSAPSF-----AGEAEALSKKVGRRPKPSSPSSKIVDHRSMFDSVYGSSAADGAKTSAEIRRDVRSDTPDETRVAFAVHAYGKDDSMPAFAGEAESLTQKVGRKQKKMGRAAAAPASKATDHRALFDSDYGTVAHDDKTSDKIRRDVRSDTPDETRVAFAVHTYGKDASAPAFAREAEALSKKVGREPKAHAPVPKI-----VHD-RSMFDS--VYGSSAADDDKTSDKIRRDVRSDTPDETRVAFAVNTYGKDISAPTFAGDAE-------ALSKK--AGRKAKHSGPTSKVTDHRALFDSDYGAAAADDKTSDKIRRQVSADTPDETRVAFAVHAYGKDASMPAFAGDAEAIAKR 1284
            TP  T++AF+   YGKD ++         A AA+ +  ++  T +     A V D+R++FDS     A D K S  I+RDV ADTPD TRVAF   AYGKD  A +      A E EAL  +        + ++ + D R+MFDS     A       A I+RDV++DTPD TRVAF   AYGKD    A   E E+   +  R  +  GR AAA A+   D R++FDSD    A   + SD I+R+V  DTPD TRVAF    YGKD  A A   E EA      R  +AH           VHD RSMFDS    G+ A    + SD I+R V ++TP+ TR+ FA + YGKD   P    ++E       AL+++  AG  A  + P   +   R++FDSD    A   + S  I+R V   TP  TR++F    YG D      A  A+A+A++
Sbjct:   52 TPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDA-IKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALR-MRAQGRGAAA-AAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRV-RAHGAGASSADAAPVHDSRSMFDSDLTQGAGAM---QGSDSIKRHVAANTPEATRLVFAGSDYGKD---PRSVDNSEKKKAEIAALAERVGAGTPAAAAAP---IHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEK 496
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BLAST of mRNA_P-wetherbeei_contig17300.1.1 vs. uniprot
Match: A0A835Z577_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z577_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.110e-38
Identity = 137/380 (36.05%), Postives = 199/380 (52.37%), Query Frame = 1 
Query:    1 TPDATRVAFAVHAYGKDHSAPAFAAEAEALSKTMTRKTQHDV-AKVVDDRSLFDSDYGAAAADDKTSDKIRRDVKADTPDETRVAFAVHAYGKDDSAPSFAGEAEALSKKVGRRPKPSSPS--SKIVDHRSMFDSVYGSSAADGAKTSAEIRRDVRSDTPDETRVAFAVHAYGKDDSMPAFAGEAESLTQKVGRKQKKMGRAAAAPASKATDHRALFDSDYGTVAHDD--KTSDKIRRDVRSDTPDETRVAFAVHTYGKDASAPAFAREAEALSKKVGREPKAHAPVPKIVHDR-SMFDSVYGSSAADDDKTSDKIRRDVRSDTPDETRVAFAVNTYGKDISAPTFAGDAEALSKKAGRKAKHSGPTSKVTDHRALFDSD 1122
            TP ATR+AFA  AYG  H A     + EAL K+  +    D  +KV   RSLFDS     + D KT   + ++VK  TPD TR++     YGK+ + PS     +A ++  GR  K S     S +   R++FDSV   + AD  K   ++ ++V++DTPD TR++     YGKD +MPA AG    +  ++G  ++    A +   S+    RA+FDS    + H D  K  + I R V++DTPD TR++     YGKDA         E LS K     +A AP    +H R +MFDSV   + ADD K  + + R+V++DTPD TR++   + YG D S P  A     +  ++G++   + P SKV   R  FD+D
Sbjct:   28 TPAATRLAFAESAYG--HGASTHDHDVEALKKSYKKSATPDATSKVHSRRSLFDSAQTQQSDDSKTFIDVAKEVKTGTPDITRLSVFDSDYGKE-AMPS-----DAQARIQGRSGKRSMAERVSAVHSRRALFDSVM--TQADDTKAFKDVLKEVKTDTPDATRLSVFNSDYGKD-AMPANAGA--MIEGRIGGSRQSADAAGSGGVSRIHSRRAMFDS---VLVHSDDGKAFEDIVRVVKTDTPDVTRLSVFDSDYGKDAMPANADAMIEGLSGK-----RAAAPRVSAIHSRRAMFDSVM--TQADDGKAFEHVVREVKTDTPDITRLSVFDSDYGAD-SQPHDAHTK--IEGRSGKREASAAPVSKVHCSRRAFDTD 381
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI1_ECTSI7.160e-5637.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z577_9STRA7.110e-3836.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17300contigP-wetherbeei_contig17300:130..1413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1284
Hectar predicted targeting categoryother localisation
Exons1
Cds size1284
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.381121-CDS-P-wetherbeei_contig17300:129..14131683186113.381121-CDS-P-wetherbeei_contig17300:129..1413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17300 130..1413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17300.1.1prot_P-wetherbeei_contig17300.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17300 130..1413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17300.1.1

>prot_P-wetherbeei_contig17300.1.1 ID=prot_P-wetherbeei_contig17300.1.1|Name=mRNA_P-wetherbeei_contig17300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=428bp
TPDATRVAFAVHAYGKDHSAPAFAAEAEALSKTMTRKTQHDVAKVVDDRS
LFDSDYGAAAADDKTSDKIRRDVKADTPDETRVAFAVHAYGKDDSAPSFA
GEAEALSKKVGRRPKPSSPSSKIVDHRSMFDSVYGSSAADGAKTSAEIRR
DVRSDTPDETRVAFAVHAYGKDDSMPAFAGEAESLTQKVGRKQKKMGRAA
AAPASKATDHRALFDSDYGTVAHDDKTSDKIRRDVRSDTPDETRVAFAVH
TYGKDASAPAFAREAEALSKKVGREPKAHAPVPKIVHDRSMFDSVYGSSA
ADDDKTSDKIRRDVRSDTPDETRVAFAVNTYGKDISAPTFAGDAEALSKK
AGRKAKHSGPTSKVTDHRALFDSDYGAAAADDKTSDKIRRQVSADTPDET
RVAFAVHAYGKDASMPAFAGDAEAIAKR
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mRNA from alignment at P-wetherbeei_contig17300:130..1413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17300.1.1 ID=mRNA_P-wetherbeei_contig17300.1.1|Name=mRNA_P-wetherbeei_contig17300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig17300:130..1413- (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGGACGCGACGCGCGTTGCCTTTGCCGTCCATGCCTATGGCAAGGA
CCACAGCGCGCCAGCATTTGCCGCTGAGGCCGAGGCGCTCAGCAAGACGA
TGACGCGGAAGACGCAGCACGACGTCGCCAAGGTCGTCGATGACCGGTCG
CTGTTCGATAGCGACTACGGCGCCGCGGCGGCCGATGACAAGACGTCCGA
CAAGATCCGGCGGGATGTCAAGGCCGACACACCCGACGAGACGCGCGTCG
CCTTCGCTGTCCACGCTTATGGCAAGGACGATAGCGCGCCGTCCTTCGCT
GGCGAAGCGGAAGCGCTGAGCAAGAAGGTCGGGCGGAGGCCGAAGCCGAG
CAGCCCGTCATCGAAAATCGTCGACCACCGCTCCATGTTCGACAGCGTCT
ACGGCTCTTCGGCGGCGGACGGCGCCAAGACGTCAGCGGAGATTCGGCGG
GACGTGCGATCGGACACGCCGGACGAGACGCGGGTGGCGTTTGCCGTCCA
CGCCTATGGCAAGGACGACAGCATGCCAGCGTTCGCCGGCGAGGCGGAAT
CGCTGACGCAGAAGGTTGGCCGGAAGCAGAAGAAGATGGGGAGGGCGGCG
GCAGCGCCGGCGTCCAAGGCGACGGACCACCGGGCGCTCTTCGACAGCGA
CTACGGCACGGTGGCGCACGACGACAAAACCTCCGATAAAATCCGGCGGG
ACGTGCGATCGGACACTCCGGATGAGACTCGCGTGGCGTTCGCGGTGCAC
ACGTATGGCAAGGACGCCAGCGCGCCGGCGTTCGCGAGGGAGGCAGAGGC
TCTCAGCAAGAAGGTCGGCCGGGAGCCAAAGGCGCATGCTCCGGTGCCCA
AAATCGTCCACGACCGCTCCATGTTCGACAGCGTCTATGGATCGTCGGCG
GCGGACGATGATAAGACCTCCGATAAGATCCGGCGGGACGTGCGATCGGA
CACGCCGGATGAGACTCGCGTGGCGTTCGCCGTGAACACGTACGGCAAGG
ACATTAGCGCGCCGACGTTTGCGGGGGACGCCGAGGCGCTGAGCAAGAAG
GCTGGGCGGAAGGCGAAGCACAGCGGGCCGACCTCCAAGGTGACGGACCA
CCGGGCGCTGTTCGACAGTGACTATGGCGCAGCGGCAGCCGATGACAAGA
CGTCTGACAAAATCCGGCGGCAGGTCAGCGCGGACACGCCGGACGAGACG
CGAGTCGCCTTCGCCGTCCACGCCTATGGCAAGGACGCCAGCATGCCGGC
ATTTGCTGGCGACGCCGAGGCGATCGCGAAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17300:130..1413-

>mRNA_P-wetherbeei_contig17300.1.1 ID=mRNA_P-wetherbeei_contig17300.1.1|Name=mRNA_P-wetherbeei_contig17300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig17300:130..1413- (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGGACGCGACGCGCGTTGCCTTTGCCGTCCATGCCTATGGCAAGGA
CCACAGCGCGCCAGCATTTGCCGCTGAGGCCGAGGCGCTCAGCAAGACGA
TGACGCGGAAGACGCAGCACGACGTCGCCAAGGTCGTCGATGACCGGTCG
CTGTTCGATAGCGACTACGGCGCCGCGGCGGCCGATGACAAGACGTCCGA
CAAGATCCGGCGGGATGTCAAGGCCGACACACCCGACGAGACGCGCGTCG
CCTTCGCTGTCCACGCTTATGGCAAGGACGATAGCGCGCCGTCCTTCGCT
GGCGAAGCGGAAGCGCTGAGCAAGAAGGTCGGGCGGAGGCCGAAGCCGAG
CAGCCCGTCATCGAAAATCGTCGACCACCGCTCCATGTTCGACAGCGTCT
ACGGCTCTTCGGCGGCGGACGGCGCCAAGACGTCAGCGGAGATTCGGCGG
GACGTGCGATCGGACACGCCGGACGAGACGCGGGTGGCGTTTGCCGTCCA
CGCCTATGGCAAGGACGACAGCATGCCAGCGTTCGCCGGCGAGGCGGAAT
CGCTGACGCAGAAGGTTGGCCGGAAGCAGAAGAAGATGGGGAGGGCGGCG
GCAGCGCCGGCGTCCAAGGCGACGGACCACCGGGCGCTCTTCGACAGCGA
CTACGGCACGGTGGCGCACGACGACAAAACCTCCGATAAAATCCGGCGGG
ACGTGCGATCGGACACTCCGGATGAGACTCGCGTGGCGTTCGCGGTGCAC
ACGTATGGCAAGGACGCCAGCGCGCCGGCGTTCGCGAGGGAGGCAGAGGC
TCTCAGCAAGAAGGTCGGCCGGGAGCCAAAGGCGCATGCTCCGGTGCCCA
AAATCGTCCACGACCGCTCCATGTTCGACAGCGTCTATGGATCGTCGGCG
GCGGACGATGATAAGACCTCCGATAAGATCCGGCGGGACGTGCGATCGGA
CACGCCGGATGAGACTCGCGTGGCGTTCGCCGTGAACACGTACGGCAAGG
ACATTAGCGCGCCGACGTTTGCGGGGGACGCCGAGGCGCTGAGCAAGAAG
GCTGGGCGGAAGGCGAAGCACAGCGGGCCGACCTCCAAGGTGACGGACCA
CCGGGCGCTGTTCGACAGTGACTATGGCGCAGCGGCAGCCGATGACAAGA
CGTCTGACAAAATCCGGCGGCAGGTCAGCGCGGACACGCCGGACGAGACG
CGAGTCGCCTTCGCCGTCCACGCCTATGGCAAGGACGCCAGCATGCCGGC
ATTTGCTGGCGACGCCGAGGCGATCGCGAAGCGG
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