mRNA_P-wetherbeei_contig17243.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17243.2.1
Unique NamemRNA_P-wetherbeei_contig17243.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A1F4DKJ3_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DKJ3_9PROT)

HSP 1 Score: 210 bits (535), Expect = 3.690e-66
Identity = 108/168 (64.29%), Postives = 136/168 (80.95%), Query Frame = 1
Query:   43 AAPAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSK---PGAPASASP 537
            A  A+AE+ADREKP+NLEADRV +DDA++ AVF G V LTQGTL I+ D++ V+QD +GF++G  +GN  +FRQKREG D+YIEG++ER+EYDG+ADKMQMF  A ++RG DEVRG+YI+Y+A TEFFQVIGGG  AAT  NP+GRVRAV+QPK K   P AP S +P
Sbjct:   33 ATAAYAEKADREKPINLEADRVTVDDARQIAVFEGHVVLTQGTLMIRGDRMQVRQDNDGFKHGTTWGNLAYFRQKREGYDDYIEGWAERIEYDGRADKMQMFNRALMKRGQDEVRGNYISYDATTEFFQVIGGGPKAATPNNPEGRVRAVLQPKPKEKTPAAPVSLTP 200          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A7C3JPE8_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JPE8_9PROT)

HSP 1 Score: 208 bits (530), Expect = 1.350e-65
Identity = 108/168 (64.29%), Postives = 136/168 (80.95%), Query Frame = 1
Query:   28 AAGLGAAP-AFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPGAPAS 528
            A  L AAP A AE+ADR+KP+NLEADRV +DDAK+ A+F G+V LTQGTL I+ D++ V+QD EGF+YG  +G+  HFRQKREG DEYIEG++ER+EYDG+A+ MQMF  AR++R  DEVRG+YI+Y+A TEF+QV+GGG  AAT  NP+GRVRAVIQPK K   PA+
Sbjct:   12 ALALLAAPLARAEKADRDKPINLEADRVTIDDAKQTAMFEGNVVLTQGTLQIRGDRMEVRQDKEGFRYGTTWGDLAHFRQKREGYDEYIEGWAERIEYDGRAETMQMFARARMRRAQDEVRGNYISYDARTEFYQVVGGGPRAATANNPEGRVRAVIQPKPKEQPPAA 179          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A1F4A5S4_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A5S4_9PROT)

HSP 1 Score: 207 bits (527), Expect = 3.740e-65
Identity = 107/175 (61.14%), Postives = 138/175 (78.86%), Query Frame = 1
Query:    4 RLMALLALAAGLGAAPAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPGAPAS 528
            R +AL    A + A  A  E+ADR+KP+NLEADRV +DDAK+ A F G+V LTQGT+ I+ D++ V+QD +GF++GI++G   +FRQKREG DEYIEG++ER+EYDG+ADK+QMF  A ++RG DEVRGDYI+Y+A TEFFQVIGGG  AA+  NP GRVRAV+QPKS+   PAS
Sbjct:    4 RRLALAIACALVLAGAAHGEKADRDKPINLEADRVTVDDAKQLATFEGNVVLTQGTMVIRGDRMEVRQDYDGFRHGISWGKLAYFRQKREGFDEYIEGWAERIEYDGRADKVQMFTRAAMKRGQDEVRGDYISYDATTEFFQVIGGGAKAASPNNPDGRVRAVMQPKSREKPPAS 178          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A7V8ZNN2_9BURK (Lipopolysaccharide export system protein LptA n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZNN2_9BURK)

HSP 1 Score: 206 bits (524), Expect = 5.970e-65
Identity = 103/163 (63.19%), Postives = 135/163 (82.82%), Query Frame = 1
Query:   46 APAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPGAPASAS 534
            A A AE  D +KPVNLEADRV++DDA++ +VF G+V +TQGTL I+ADKI+++QD  GFQ+GIAYG PV F+QKREG++E+IEG+ ER+EYDGK++K++ F  AR++RG DEVRG+YI+Y+AV E +QV GGGK AAT  NPQGRVRAVIQPK +P   A++S
Sbjct:    7 AVAQAELGDSDKPVNLEADRVNIDDARQVSVFEGNVKMTQGTLAIQADKIVIRQDDSGFQHGIAYGAPVIFKQKREGTNEFIEGYGERVEYDGKSNKIEFFTKARVKRGDDEVRGNYISYDAVAESYQVRGGGKEAATANNPQGRVRAVIQPKKQPAESAASS 169          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A1F4DTU7_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DTU7_9PROT)

HSP 1 Score: 206 bits (524), Expect = 1.720e-64
Identity = 109/176 (61.93%), Postives = 141/176 (80.11%), Query Frame = 1
Query:    7 LMALLALAAGLGAAPA-FAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPGAPASA 531
            ++A+LA    L  A A  AE+ADR+KP+NLEADRV +DDAK+ ++F G+V LTQGT+ I+  ++ V+QD +GF+ G A+G+  +FRQKREG DEYIEG++ER+EYDG+ADKMQMFV A ++RG DEVRG+YI+Y+A TEFFQVIGGG  AAT  NP GRVRAV+QPKSK   PA+A
Sbjct:   19 ILAILATCCALLLATASHAEKADRDKPINLEADRVTVDDAKQVSIFDGNVVLTQGTMVIRGYRMEVRQDNDGFKRGTAWGDLAYFRQKREGFDEYIEGWAERIEYDGRADKMQMFVRAYMKRGEDEVRGNYISYDAATEFFQVIGGGAKAATPNNPDGRVRAVLQPKSKQKPPAAA 194          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A6F8VFJ9_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Sulfurimicrobium lacus TaxID=2715678 RepID=A0A6F8VFJ9_9PROT)

HSP 1 Score: 204 bits (520), Expect = 3.920e-64
Identity = 102/168 (60.71%), Postives = 132/168 (78.57%), Query Frame = 1
Query:   37 LGAAPAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPG-APASASP 537
            L  A   AE ADR+KP+NLEAD V +DDA K + ++G+V LTQGTL I+ADK++V +DA G Q+G AYGNP  FRQKREG DEY+EG+ +R+EYDGK DK+++F  AR++RG DEVRG+YI+Y+A TEFFQ +GGGK  A+ G  +GRV AVIQPK KPG +PA+ +P
Sbjct:   16 LAPATVLAELADRDKPINLEADTVTVDDATKVSTYMGNVQLTQGTLLIRADKLVVTEDATGLQHGTAYGNPASFRQKREGLDEYVEGYGQRIEYDGKNDKVELFTQARMKRGQDEVRGNYISYDAKTEFFQALGGGKEVASPGREKGRVHAVIQPKPKPGKSPAAPAP 183          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A4P5UCB1_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Nitrosomonadaceae bacterium TaxID=2026767 RepID=A0A4P5UCB1_9PROT)

HSP 1 Score: 201 bits (511), Expect = 4.950e-63
Identity = 102/176 (57.95%), Postives = 137/176 (77.84%), Query Frame = 1
Query:   10 MALLALAAGLGAAPAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPGAPASASP 537
            ++++ L A L +    AERADR+KPVNLEADR  +++A + +VF G+V LTQGTL I+ADK++VK+D+ GF++  A+GNPV FRQKR+G DEYIE +SER+EYDGKADK+Q+F  AR++RG DEV GDYI+Y+AV+EFFQV G  + + T  NP GRVR VIQPK+K  + A+  P
Sbjct:    4 LSVIFLLALLPSGHTLAERADRDKPVNLEADRASVENATRTSVFTGNVVLTQGTLIIRADKMLVKEDSNGFRHATAFGNPVSFRQKRDGKDEYIESWSERMEYDGKADKVQLFKKARLKRGQDEVEGDYISYDAVSEFFQVSGNNEKSDTQANPSGRVRIVIQPKNKQESSAAEKP 179          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A1I2ZPT3_9PROT (Lipopolysaccharide export system protein LptA n=2 Tax=Nitrosospira sp. Nsp14 TaxID=1855333 RepID=A0A1I2ZPT3_9PROT)

HSP 1 Score: 200 bits (509), Expect = 2.450e-62
Identity = 102/154 (66.23%), Postives = 124/154 (80.52%), Query Frame = 1
Query:   55 FAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPG 516
             AERADR++PV+LEADR  + DA K A F G V LTQGTL I+ADK+ VK+DA GFQY  A+GN V FRQKR+G DEY+EG+SER+EYDGKADK+Q+F  AR++RG DEV GDYI+Y+AV EFFQV G G+A+  T + +GRVRAVIQPK KPG
Sbjct:   51 LAERADRDQPVHLEADRATVQDANKLATFTGHVVLTQGTLVIRADKMTVKEDANGFQYATAFGNLVSFRQKRDGRDEYVEGWSERMEYDGKADKVQLFKKARLRRGQDEVHGDYISYDAVNEFFQVNGSGEASTQT-HSEGRVRAVIQPKKKPG 203          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A7X1P7P0_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P7P0_9PROT)

HSP 1 Score: 199 bits (507), Expect = 2.950e-62
Identity = 99/156 (63.46%), Postives = 129/156 (82.69%), Query Frame = 1
Query:   43 AAPAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSK 510
            A  A AERADR+KP+NLEADRV +DDAKK +VF G+V LTQGT  +K+D++ V++DA+GFQYG+AYGNP +F+QKR+G DEYIEG++ER+EYDGKA+++Q+F NAR++RG DEVRG YI+Y+  TEF++V+G     A    P GRVRAVIQPKSK
Sbjct:    2 AGTAAAERADRDKPINLEADRVTIDDAKKVSVFEGNVVLTQGTTMLKSDRMTVREDAQGFQYGVAYGNPAYFKQKRDGVDEYIEGWAERIEYDGKAERVQLFDNARMKRGADEVRGSYISYDQPTEFYRVVGAQDNTAGNHAP-GRVRAVIQPKSK 156          
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Match: A0A658BRA2_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BRA2_9PROT)

HSP 1 Score: 199 bits (507), Expect = 4.200e-62
Identity = 105/164 (64.02%), Postives = 129/164 (78.66%), Query Frame = 1
Query:   46 APAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTLTQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSERLEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAATTGNPQGRVRAVIQPKSKPGAPASASP 537
            A   AE ADR+KPVNLEAD V+LDDA K +V+ G+V L+QGTL I+ADK++VK+DA G Q+  AYGNP  FRQKREG DEYIEG+  R+EYD + +K ++F  AR++R  DEVRG+YI+Y+A TEFFQVIGGGK AA  G  +GRVRAVIQPK+K GA ASA P
Sbjct:   23 ATGHAELADRDKPVNLEADTVNLDDASKVSVYQGNVQLSQGTLLIRADKLVVKEDAAGLQHATAYGNPASFRQKREGLDEYIEGYGLRIEYDARIEKAELFTQARMKRNQDEVRGNYISYDARTEFFQVIGGGKEAAAPGREKGRVRAVIQPKAKAGA-ASAXP 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17243.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4DKJ3_9PROT3.690e-6664.29Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A7C3JPE8_9PROT1.350e-6564.29Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A1F4A5S4_9PROT3.740e-6561.14Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A7V8ZNN2_9BURK5.970e-6563.19Lipopolysaccharide export system protein LptA n=2 ... [more]
A0A1F4DTU7_9PROT1.720e-6461.93Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A6F8VFJ9_9PROT3.920e-6460.71Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A4P5UCB1_9PROT4.950e-6357.95Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A1I2ZPT3_9PROT2.450e-6266.23Lipopolysaccharide export system protein LptA n=2 ... [more]
A0A7X1P7P0_9PROT2.950e-6263.46Lipopolysaccharide export system protein LptA n=1 ... [more]
A0A658BRA2_9PROT4.200e-6264.02Lipopolysaccharide export system protein LptA n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17243contigP-wetherbeei_contig17243:846..1382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1288494.EBAPG3_7430
Preferred namelptA
PFAMsOstA
Model size537
Max annot lvl28216|Betaproteobacteria
KEGG koko:K09774
KEGG TC1.B.42.1
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.23e-63
EggNOG OGsCOG1934@1|root,COG1934@2|Bacteria,1N776@1224|Proteobacteria,2VSI4@28216|Betaproteobacteria,3727R@32003|Nitrosomonadales
DescriptionInvolved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane
Cds size528
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.771998-CDS-P-wetherbeei_contig17243:845..13731683186111.771998-CDS-P-wetherbeei_contig17243:845..1373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17243 846..1373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.7946205-UTR-P-wetherbeei_contig17243:1373..13821683186111.7946205-UTR-P-wetherbeei_contig17243:1373..1382Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17243 1374..1382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17243.2.1prot_P-wetherbeei_contig17243.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17243 846..1373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17243.2.1

>prot_P-wetherbeei_contig17243.2.1 ID=prot_P-wetherbeei_contig17243.2.1|Name=mRNA_P-wetherbeei_contig17243.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
MALLALAAGLGAAPAFAERADREKPVNLEADRVDLDDAKKEAVFVGSVTL
TQGTLTIKADKIIVKQDAEGFQYGIAYGNPVHFRQKREGSDEYIEGFSER
LEYDGKADKMQMFVNARIQRGVDEVRGDYIAYNAVTEFFQVIGGGKAAAT
TGNPQGRVRAVIQPKSKPGAPASASP
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mRNA from alignment at P-wetherbeei_contig17243:846..1382-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17243.2.1 ID=mRNA_P-wetherbeei_contig17243.2.1|Name=mRNA_P-wetherbeei_contig17243.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig17243:846..1382- (Phaeothamnion wetherbeei SAG_119_79)
CTTCGCCTGATGGCGTTACTGGCGCTCGCGGCCGGATTGGGCGCCGCGCC TGCCTTCGCTGAGAGAGCGGATCGCGAAAAACCGGTCAACCTCGAGGCCG ACCGCGTTGATCTGGACGATGCAAAGAAGGAGGCGGTCTTCGTCGGTTCC GTGACCCTGACACAGGGCACGCTGACCATCAAGGCCGACAAGATCATCGT CAAACAGGACGCCGAAGGGTTCCAATACGGCATCGCCTATGGCAACCCGG TGCATTTCCGCCAGAAACGCGAAGGGTCCGACGAATATATCGAAGGATTC TCCGAGCGCCTCGAATACGACGGCAAGGCCGACAAGATGCAGATGTTCGT CAACGCGCGTATCCAGCGTGGCGTCGACGAAGTGCGGGGCGATTACATCG CCTACAACGCGGTCACGGAATTCTTCCAGGTGATCGGCGGGGGCAAGGCT GCCGCCACTACGGGCAACCCACAGGGACGGGTCCGCGCGGTCATCCAGCC CAAGTCGAAGCCCGGTGCGCCGGCCTCCGCTTCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17243:846..1382-

>mRNA_P-wetherbeei_contig17243.2.1 ID=mRNA_P-wetherbeei_contig17243.2.1|Name=mRNA_P-wetherbeei_contig17243.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig17243:846..1382- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTACTGGCGCTCGCGGCCGGATTGGGCGCCGCGCCTGCCTTCGC
TGAGAGAGCGGATCGCGAAAAACCGGTCAACCTCGAGGCCGACCGCGTTG
ATCTGGACGATGCAAAGAAGGAGGCGGTCTTCGTCGGTTCCGTGACCCTG
ACACAGGGCACGCTGACCATCAAGGCCGACAAGATCATCGTCAAACAGGA
CGCCGAAGGGTTCCAATACGGCATCGCCTATGGCAACCCGGTGCATTTCC
GCCAGAAACGCGAAGGGTCCGACGAATATATCGAAGGATTCTCCGAGCGC
CTCGAATACGACGGCAAGGCCGACAAGATGCAGATGTTCGTCAACGCGCG
TATCCAGCGTGGCGTCGACGAAGTGCGGGGCGATTACATCGCCTACAACG
CGGTCACGGAATTCTTCCAGGTGATCGGCGGGGGCAAGGCTGCCGCCACT
ACGGGCAACCCACAGGGACGGGTCCGCGCGGTCATCCAGCCCAAGTCGAA
GCCCGGTGCGCCGGCCTCCGCTTCGCCG
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