mRNA_P-wetherbeei_contig17135.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17135.1.1
Unique NamemRNA_P-wetherbeei_contig17135.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17135.1.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.230e-20
Identity = 72/167 (43.11%), Postives = 92/167 (55.09%), Query Frame = 1 
Query:  187 LSLLSLFPRFFFLGSFVSALGAALPALARAVGQTEARAGMCILGRGIGRLTGSAASAVPPASCGLRRATRATLLAFATAGMGVCAVLVAFTHSLPLLVLWTSLQGAFGGAIDALSNCLITVVWGAEVVPWMQALHFLFSAGALSTPAAIGAAGYVAAFLGFAAATLP 687
            L  L+LF  FF LG F+S LG A+  L+  +G  +   G  +  RG+G L GS  S+V      L    R   L  ATAG+G+ A+ +    +L  +      QG  GG+IDA++N  I+ V GA V PWMQ LHF FSAGAL  P A+G  GY AAFL F    LP
Sbjct:   16 LPSLALFGSFFLLGVFISCLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSVQLPIGALN--DRMARLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGAGVAPWMQGLHFCFSAGALLAPVAVGHLGYPAAFLVFGLLALP 180
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BLAST of mRNA_P-wetherbeei_contig17135.1.1 vs. uniprot
Match: A0A7S3M1T1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1T1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.470e-15
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1 
Query:  205 FPRFFFLGSFVSALGAALPALARAVGQTEARAGMCILGRGIGRLTGSAASAVPPASCGLRRATRATLLAFATAGMGVCAVLVAFTHSLPLLVLWTSLQGAFGGAIDALSNCLITVVWGAEVVPWMQALHFLFSAGALSTPAAIGAAGYV 651
            F  F   G+  +ALGA++PALARA+ + E+R G   + RG G L G+  SAV      L   ++  +   A+  MGV   L++ T     ++  +  QG   G ID +SNCL   +W   + PWMQALH  F  GA+  P  +G  GYV
Sbjct:   34 FAAFTIYGASNAALGASVPALARALHKPESRIGFIFIFRGAGFLVGTLGSAVLMNYDNLPL-SKEVITCLASIVMGVMTYLISCTDDYNTVLFLSVFQGFGFGGIDCISNCLFPELWDVRIQPWMQALHLCFGIGAMIGPTLVGTVGYV 181
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BLAST of mRNA_P-wetherbeei_contig17135.1.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.610e-14
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:  406 LAFATAGMGVCAVLVAFTHSLPLLVLWTSLQGAFGGAIDALSNCLITVVWGAEVVPWMQALHFLFSAGALSTPAAIGAAGYVAAFLGFAAATLPIAAA 699
            L  ATAG+G+ A+ +    +L  +      QG  GG+IDA++N  I+ V GA+V PWMQ LHF FSAGAL  P A+G  GY AAFL F    LP  AA
Sbjct:    4 LGAATAGIGLLAIAIDAAQTLWAVSALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQGLHFCFSAGALLAPVAVGHMGYPAAFLVFGLLALPTGAA 101
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BLAST of mRNA_P-wetherbeei_contig17135.1.1 vs. uniprot
Match: W7TVG0_9STRA (Sodium-dependent glucose transporter 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVG0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-9
Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 1 
Query:  214 FFFLGSFVSALGAALPALARAVG-QTEARAGMCILGRGIGRLTGSAASAVPPASCGLRR---ATRATLLAFATAGMGVCAVLVAFTHSLPLLVLWTSLQGAFGGAIDALSNCLITVVWGAE--VVPWMQALHFLFSAGALSTPAAIGAAGYVAAF 660
            FF LG  V   G A+P+L   +G + E + G     RG G LTG+  ++V    C   +       +LLA      G+  + + +TH     ++   LQG   G +D  +N ++  +WG    V P MQA+H  F  GA+++PAA+GA GYV AF
Sbjct:   40 FFSLGGLVGVTGPAIPSLTVHLGCRDETQLGSAFTCRGAGYLTGAVLASVLDTRCSKGKHLVVVMGSLLA------GLATLGIVWTHVFSGFLVLMVLQGLGLGCVDTAANAVVLELWGGSPHVEPLMQAMHACFGIGAVASPAAVGALGYVLAF 188
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BLAST of mRNA_P-wetherbeei_contig17135.1.1 vs. uniprot
Match: K8YSW5_NANGC (Sodium-dependent glucose transporter 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSW5_NANGC)

HSP 1 Score: 55.8 bits (133), Expect = 4.290e-5
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:  430 GVCAVLVAFTHSLPLLVLWTSLQGAFGGAIDALSNCLITVVWGAE--VVPWMQALHFLFSAGALSTPAAIGAAGYVAAF 660
            G+  + + +TH     ++   LQG   G +D  +N ++  +WG    V P MQA+H  F  GA+++PAA+GA GYV AF
Sbjct:    7 GLATLGIVWTHVFSGFLVLMVLQGLGLGCVDTAANAVVLELWGGSPHVEPLMQAMHACFGIGAVASPAAVGALGYVLAF 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FS47_ECTSI1.230e-2043.11Major facilitator superfamily sugar transporter n=... [more]
A0A7S3M1T1_9STRA3.470e-1537.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5J9W6_9PHAE8.610e-1448.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TVG0_9STRA1.100e-934.19Sodium-dependent glucose transporter 1 n=2 Tax=Mon... [more]
K8YSW5_NANGC4.290e-537.97Sodium-dependent glucose transporter 1 n=1 Tax=Nan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17135contigP-wetherbeei_contig17135:189..1456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog10029.XP_007628110.1
Preferred nameKIAA1919
PFAMsC6,MFS_1
Model size961
Max annot lvl33208|Metazoa
KEGG koko:K08175
KEGG TC2.A.1.7
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005355,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0015144,GO:0015145,GO:0015149,GO:0015749,GO:0022857,GO:0034219,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:1904659
Exons3
Evalue6.27e-08
EggNOG OGs28Z0Q@1|root,2R5UW@2759|Eukaryota,38BCW@33154|Opisthokonta,3BHS8@33208|Metazoa,3D1D3@33213|Bilateria,4846H@7711|Chordata,48X24@7742|Vertebrata,3J2M1@40674|Mammalia,35QW1@314146|Euarchontoglires,4Q8BU@9989|Rodentia
Descriptionsodium-dependent glucose transporter
Cds size960
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.0612597-CDS-P-wetherbeei_contig17135:188..6861683186109.0612597-CDS-P-wetherbeei_contig17135:188..686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17135 189..686 +
1683186109.0707445-CDS-P-wetherbeei_contig17135:867..9511683186109.0707445-CDS-P-wetherbeei_contig17135:867..951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17135 868..951 +
1683186109.0786228-CDS-P-wetherbeei_contig17135:1078..14561683186109.0786228-CDS-P-wetherbeei_contig17135:1078..1456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17135 1079..1456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17135.1.1prot_P-wetherbeei_contig17135.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17135 189..1456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17135.1.1

>prot_P-wetherbeei_contig17135.1.1 ID=prot_P-wetherbeei_contig17135.1.1|Name=mRNA_P-wetherbeei_contig17135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MEGGGWGTAMTPQQCFHTVPASWRPASFWRGEGCREFLKLNTKGCRPYPP
FQASISVLNVSPLSLLSLFPRFFFLGSFVSALGAALPALARAVGQTEARA
GMCILGRGIGRLTGSAASAVPPASCGLRRATRATLLAFATAGMGVCAVLV
AFTHSLPLLVLWTSLQGAFGGAIDALSNCLITVVWGAEVVPWMQALHFLF
SAGALSTPAAIGAAGYVAAFLGFAAATLPIAAAGSAWSVTADGWRLEDGV
NRVVHVNDGFQDIVDNNGGEDHGGGSNGGNGGSMSGDCGNGGCRSGASGG
VKTGCRGGVELVATATPARD
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mRNA from alignment at P-wetherbeei_contig17135:189..1456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17135.1.1 ID=mRNA_P-wetherbeei_contig17135.1.1|Name=mRNA_P-wetherbeei_contig17135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1268bp|location=Sequence derived from alignment at P-wetherbeei_contig17135:189..1456+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGCGGAGGATGGGGCACAGCGATGACGCCGCAGCAGTGCTTTCA
CACCGTTCCCGCATCGTGGCGTCCTGCATCATTTTGGCGGGGTGAGGGGT
GTCGCGAGTTTCTGAAGCTAAACACCAAAGGCTGCCGACCATATCCGCCG
TTTCAAGCAAGTATTTCCGTCTTGAACGTTTCACCCCTATCCCTTCTTTC
TCTCTTCCCCAGATTCTTTTTCCTCGGATCTTTCGTCAGCGCGCTCGGGG
CCGCTCTCCCAGCCCTCGCACGCGCTGTCGGACAGACGGAGGCGCGAGCG
GGCATGTGCATTCTCGGCCGCGGCATAGGCCGTCTCACCGGCAGCGCTGC
CTCCGCGGTGCCGCCAGCCAGTTGCGGGCTGCGCCGTGCAACGCGAGCCA
CCCTTCTAGCCTTCGCGACCGCCGGAATGGGAGTATGTGCTGTTTTGGTA
GCCTTCACGCACAGCCTTCCGCTGCTTGTGCTGTGGACGAGTTTGCAGGT
AAGTCGTGGGGTTTCTGGACGGAAAGAAGCTTCAATCCCTCTCTTAGAAT
TCTTACAGCGTAGACTTACTGTAGTTGGCAAGGGAAAGGCCTTTCCTCAA
GCTGCTCCCTGATTGCGTTTTCCATGTTGCCATGCGTCTTTCGTCTTCCC
TGCTGCCGTGCCTCTTTGGCTTCCTGCAGGGTGCCTTCGGTGGTGCGATC
GACGCGCTCTCCAACTGTCTAATTACTGTTGTCTGGGGCGCCGAAGTCGT
CCCGTGGATGCAGGTGTGACAAGGTCTCCCCGTTTCGCCGTTGTGCTCTC
ACAGAAATGTCTCGTTTTGCTGCTTACATTTGGCTGCATCGTCACCATGT
CACTAATACATCATATTTCCCTGCGCTGCGGCGGCGTCAGGCTCTGCACT
TCCTCTTTAGTGCGGGTGCACTCTCCACTCCGGCGGCCATTGGAGCCGCC
GGCTACGTTGCGGCCTTTCTTGGCTTTGCCGCTGCAACCCTGCCGATCGC
CGCCGCGGGCTCCGCTTGGAGCGTGACCGCCGACGGCTGGCGGTTGGAGG
ACGGCGTCAATCGGGTTGTGCATGTCAACGATGGTTTCCAGGACATTGTC
GACAACAACGGCGGCGAGGACCACGGCGGTGGCAGCAATGGCGGTAACGG
AGGCTCTATGAGTGGCGACTGCGGTAACGGCGGCTGCAGGAGTGGGGCGT
CGGGCGGCGTTAAAACTGGCTGCAGGGGCGGCGTGGAGCTGGTGGCGACG
GCGACGCCGGCGAGAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17135:189..1456+

>mRNA_P-wetherbeei_contig17135.1.1 ID=mRNA_P-wetherbeei_contig17135.1.1|Name=mRNA_P-wetherbeei_contig17135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig17135:189..1456+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGCGGAGGATGGGGCACAGCGATGACGCCGCAGCAGTGCTTTCA
CACCGTTCCCGCATCGTGGCGTCCTGCATCATTTTGGCGGGGTGAGGGGT
GTCGCGAGTTTCTGAAGCTAAACACCAAAGGCTGCCGACCATATCCGCCG
TTTCAAGCAAGTATTTCCGTCTTGAACGTTTCACCCCTATCCCTTCTTTC
TCTCTTCCCCAGATTCTTTTTCCTCGGATCTTTCGTCAGCGCGCTCGGGG
CCGCTCTCCCAGCCCTCGCACGCGCTGTCGGACAGACGGAGGCGCGAGCG
GGCATGTGCATTCTCGGCCGCGGCATAGGCCGTCTCACCGGCAGCGCTGC
CTCCGCGGTGCCGCCAGCCAGTTGCGGGCTGCGCCGTGCAACGCGAGCCA
CCCTTCTAGCCTTCGCGACCGCCGGAATGGGAGTATGTGCTGTTTTGGTA
GCCTTCACGCACAGCCTTCCGCTGCTTGTGCTGTGGACGAGTTTGCAGGG
TGCCTTCGGTGGTGCGATCGACGCGCTCTCCAACTGTCTAATTACTGTTG
TCTGGGGCGCCGAAGTCGTCCCGTGGATGCAGGCTCTGCACTTCCTCTTT
AGTGCGGGTGCACTCTCCACTCCGGCGGCCATTGGAGCCGCCGGCTACGT
TGCGGCCTTTCTTGGCTTTGCCGCTGCAACCCTGCCGATCGCCGCCGCGG
GCTCCGCTTGGAGCGTGACCGCCGACGGCTGGCGGTTGGAGGACGGCGTC
AATCGGGTTGTGCATGTCAACGATGGTTTCCAGGACATTGTCGACAACAA
CGGCGGCGAGGACCACGGCGGTGGCAGCAATGGCGGTAACGGAGGCTCTA
TGAGTGGCGACTGCGGTAACGGCGGCTGCAGGAGTGGGGCGTCGGGCGGC
GTTAAAACTGGCTGCAGGGGCGGCGTGGAGCTGGTGGCGACGGCGACGCC
GGCGAGAGAC
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