mRNA_P-wetherbeei_contig17090.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17090.1.1
Unique NamemRNA_P-wetherbeei_contig17090.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: D7G8M8_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M8_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 5.540e-26
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    7 AHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            AHR +LSLRS P+RAML+SGMRESF+  V +KDIR +VF +LLTYLYTDTLQL+  +DI ELLV ANQ    YTL DL++LCEG L
Sbjct:  107 AHRALLSLRSDPMRAMLRSGMRESFTMDVLVKDIRPAVFTALLTYLYTDTLQLQRPEDITELLVVANQ----YTLTDLLSLCEGFL 188          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A835ZCY9_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.620e-18
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    7 AHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEG 258
            AHR +L+ RSAPLRAML  GMRES S VV ++D R SVF +LL Y+YTD L   + +D++EL+VAA     QY L++L ALCEG
Sbjct: 1533 AHRAILAQRSAPLRAMLCGGMRESLSAVVDVRDTRPSVFAALLLYVYTDRLMPAAPEDVVELMVAA----CQYGLEELAALCEG 1612          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A067CMH8_SAPPC (BTB domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CMH8_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-9
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   10 HRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQ---LESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            H++VLSL S   RA+  +G RE+ +  + + D+R  VF+++L+YLY  +L+   L+S DD +ELL+AA++    Y LD L  LCE  L
Sbjct:  278 HKIVLSLGSDRFRALFSAGFREASATEIVLPDMRLDVFEAMLSYLYRGSLEAHALDSMDDAIELLMAADE----YMLDHLKQLCETAL 361          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A151ZK46_9MYCE (BTB domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZK46_9MYCE)

HSP 1 Score: 59.7 bits (143), Expect = 1.830e-8
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    7 AHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            AH+ +LS R A  + M  S M ES    + IKD ++ VF+ ++ YLYTD+L  ++ + I++L++ A++    Y LD L +LCE  L
Sbjct:  218 AHKNILSSRCAKFKGMFSSEMVESTKKEIEIKDHKAPVFRKMIEYLYTDSLNEDNIEMILQLIIIADE----YILDSLKSLCESKL 299          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A6J8AVD7_MYTCO (BTBD3_6 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AVD7_MYTCO)

HSP 1 Score: 58.9 bits (141), Expect = 3.540e-8
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 LPAHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            +PAH+M+L+LRS   +AM      +S  D+  I+DI  + FQ+L+ YLYTD LQL S D ++ LL AA +    Y +  L++ CE  L
Sbjct:   69 IPAHKMILALRSPVFKAMFYGSFPQSEGDI-RIEDICLNTFQTLMRYLYTDDLQL-SKDSVIPLLYAAKK----YQIAGLISKCETYL 150          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: UPI001F5C91F8 (BTB/POZ and MATH domain-containing protein 2-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C91F8)

HSP 1 Score: 58.5 bits (140), Expect = 4.540e-8
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 LPAHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDI---------MELLVAANQASLQYTLDDLVALCEGLL 264
            LPAH++VL++RS   +A+L   M+E  S+ V I D++ ++F+ LL ++YTD+L  + +DD+           LLVAA++    Y ++ L  +CE +L
Sbjct:  190 LPAHKLVLAMRSRVFKALLYGPMKEKDSNRVIIDDMQPAIFKVLLHFIYTDSLPPKMNDDLEGDDKKEVTRHLLVAADR----YAMERLKLMCENIL 282          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A833R049_9POAL (BTB/POZ and MATH domain-containing protein 1-like isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R049_9POAL)

HSP 1 Score: 58.2 bits (139), Expect = 6.240e-8
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 LPAHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTL-QLESSDDI-----------MELLVAANQASLQYTLDDLVALCEGLL 264
            L AHR VL++RSA   A L   M+E ++D +T++DI +SVF+S+L ++Y+D+L   E + D+             LLVAA++    Y L+ L  +CE LL
Sbjct:  200 LKAHRCVLAVRSAVFNAELFGCMKEKWADTITVEDIETSVFKSMLYFIYSDSLPDFEVTTDVDSEKQDMRLMSQHLLVAADR----YQLERLRLMCEDLL 295          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A8B6BEB6_MYTGA (BTB/POZ domain-containing protein 9 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BEB6_MYTGA)

HSP 1 Score: 56.2 bits (134), Expect = 3.150e-7
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 LPAHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            +PAH+M+L+LRS   +AM      +S  D+ +I+DI  + F+ L+ YLYTD LQL + D ++ LL AA +    Y +  L++ CE  L
Sbjct:   64 IPAHKMILALRSPVFKAMFYGSFPQSEGDI-SIEDISLNTFKRLMGYLYTDHLQL-TKDSVIALLYAAKK----YQIAGLISKCETYL 145          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A2K2CPY1_BRADI (Uncharacterized protein (Fragment) n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2CPY1_BRADI)

HSP 1 Score: 55.8 bits (133), Expect = 3.910e-7
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 PAHRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            PAHR VL+ RS+  +A L  GM+E     + I D+ S VF+SLL +LYTD+L   +      LLVAA++    Y ++ L  +CE  L
Sbjct:  159 PAHRCVLAARSSVFKAELFGGMKEKTGGSIKIDDMESDVFESLLHFLYTDSLPTTTMGG--HLLVAADR----YNIERLKLICEDRL 239          
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Match: A0A7S3UHP4_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UHP4_OXYMA)

HSP 1 Score: 55.5 bits (132), Expect = 4.760e-7
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   10 HRMVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQLESSDDIMELLVAANQASLQYTLDDLVALCEGLL 264
            H+++LSL S PL AML S MRE+ + VV I DI ++VF+ LL Y+Y   + + S D++ ++L AA +    Y +  LV  C  +L
Sbjct:   20 HKIILSLSSEPLAAMLNSSMREATTGVVEISDIDAAVFEILLRYMYGCEISIVS-DNVFDVLEAAKK----YDVIKLVDRCASVL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17090.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8M8_ECTSI5.540e-2667.44BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZCY9_9STRA2.620e-1857.14BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A067CMH8_SAPPC1.510e-942.05BTB domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A151ZK46_9MYCE1.830e-838.37BTB domain-containing protein n=1 Tax=Tieghemostel... [more]
A0A6J8AVD7_MYTCO3.540e-842.05BTBD3_6 n=1 Tax=Mytilus coruscus TaxID=42192 RepID... [more]
UPI001F5C91F84.540e-836.08BTB/POZ and MATH domain-containing protein 2-like ... [more]
A0A833R049_9POAL6.240e-839.00BTB/POZ and MATH domain-containing protein 1-like ... [more]
A0A8B6BEB6_MYTGA3.150e-739.77BTB/POZ domain-containing protein 9 n=1 Tax=Mytilu... [more]
A0A2K2CPY1_BRADI3.910e-741.38Uncharacterized protein (Fragment) n=1 Tax=Brachyp... [more]
A0A7S3UHP4_OXYMA4.760e-741.18Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17090contigP-wetherbeei_contig17090:503..1339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGK6
PFAMsBACK,BTB,RCC1
Model size264
Max annot lvl2759|Eukaryota
KEGG koko:K11494
Hectar predicted targeting categoryother localisation
Exons3
Evalue9e-09
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-22_002280.1
Descriptionguanyl-nucleotide exchange factor activity
Cds size249
COG categoryDZ
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.3352275-UTR-P-wetherbeei_contig17090:502..5171683186107.3352275-UTR-P-wetherbeei_contig17090:502..517Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17090 503..517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.3467064-CDS-P-wetherbeei_contig17090:517..6371683186107.3467064-CDS-P-wetherbeei_contig17090:517..637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17090 518..637 +
1683186107.3546035-CDS-P-wetherbeei_contig17090:930..10141683186107.3546035-CDS-P-wetherbeei_contig17090:930..1014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17090 931..1014 +
1683186107.3621867-CDS-P-wetherbeei_contig17090:1294..13391683186107.3621867-CDS-P-wetherbeei_contig17090:1294..1339Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17090 1295..1339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17090.1.1prot_P-wetherbeei_contig17090.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17090 518..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17090.1.1

>prot_P-wetherbeei_contig17090.1.1 ID=prot_P-wetherbeei_contig17090.1.1|Name=mRNA_P-wetherbeei_contig17090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MVLSLRSAPLRAMLQSGMRESFSDVVTIKDIRSSVFQSLLTYLYTDTLQL
ESSDDIMELLVAANQASLQYTLDDLVALCEGLL
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mRNA from alignment at P-wetherbeei_contig17090:503..1339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17090.1.1 ID=mRNA_P-wetherbeei_contig17090.1.1|Name=mRNA_P-wetherbeei_contig17090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig17090:503..1339+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCAGCGCATCGAATGGTGCTGTCGCTGCGGAGCGCGCCGCTGCGGGC CATGCTGCAGAGCGGGATGCGGGAGAGCTTCAGCGACGTGGTTACCATCA AGGACATCCGTAGCTCCGTCTTCCAGAGCCTCTTGGTGAGTCGGGAGATC ACGGGATTGGAGGGAACAGGGCAGGTGTATGAACGGAAGATGCTGCCTGT TTTGGAGCTTCTCTGGTTGTCTTATCTTATTGCTGCAAGATTGATACGGC GTCAGTCAATTCTTACAGTATAGGCGTTGGTTGTCACACCTGCGTCAGGT TATGTCAGATGTCGAAATGTTGTTGCAATACGTGTTATACGTGTTATTGA CTCTTTCCTATTCCTCGTTCTCTTTTCACGTCCATGTTGGCGGTTGCTTG ACCGACTGGCGACGGCGGGCCACCGCAGACGTACCTTTACACAGACACGC TGCAGCTCGAGTCGTCGGACGACATTATGGAGCTCCTCGTCGCGGCCAAT CAGGCAAGTTTAGTCAAATTACAGAACTCATGCTCTTGGCATACCTCTTC GCTGAAATGATGCTCGCGTCTTTCTTCGGTGGCGAAGGCGGGTTAATTTC GTTCGACAAATGCGTAAGCATTCTGTTCCTACCACCTCTTTTCTCCCTCT TTTTCAACTGTCGTGCGACGACCTTGCCGCCCGTCCTCCCATCTGATCTT ATTTACACCTTTGCCGCTTCTATACTTCTCTGATGGTACCTTCCCGGCGC CGCTTTAATCCATCCCCACCAAACTACAATAAAACAAACGAGCAGTACAC GTTGGACGACCTGGTGGCGCTGTGCGAGGGGCTCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17090:503..1339+

>mRNA_P-wetherbeei_contig17090.1.1 ID=mRNA_P-wetherbeei_contig17090.1.1|Name=mRNA_P-wetherbeei_contig17090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig17090:503..1339+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGTCGCTGCGGAGCGCGCCGCTGCGGGCCATGCTGCAGAGCGG
GATGCGGGAGAGCTTCAGCGACGTGGTTACCATCAAGGACATCCGTAGCT
CCGTCTTCCAGAGCCTCTTGACGTACCTTTACACAGACACGCTGCAGCTC
GAGTCGTCGGACGACATTATGGAGCTCCTCGTCGCGGCCAATCAGGCAAG
TTTACAGTACACGTTGGACGACCTGGTGGCGCTGTGCGAGGGGCTCCTG
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