mRNA_P-wetherbeei_contig16978.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16978.1.1
Unique NamemRNA_P-wetherbeei_contig16978.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A836CCG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.370e-30
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 LNFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAYNEIGQPTASFIPAATPP------MRLQVTLRVDLLVPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPV 384
            LNFFG AV+PVL ++V V+       I + SVELEGS A+RS   ++       A+ +    P       +R  V+LR+++ VPRE+WLP  AL +GG+F+LQR +D+ +PQF+R+L RDY RW+ GDD+RAPV
Sbjct:   83 LNFFGNAVSPVLLLQVRVEEGRGRVEIHVVSVELEGSPAIRSASDSFT---CECATVVTCGDPERGGRRALRSSVSLRIEVAVPRENWLPLGALTRGGTFILQRCMDLFLPQFVRYLARDYARWAEGDDARAPV 213          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: D7G8N2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N2_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.470e-28
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    1 LNFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAYNEIGQPTASFIPAATPP-------MRLQVTLRVDLLVPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPVA 387
            ++  GT + PVL++RV V    + ANI +E VEL+GSEAVRS  G++N       S       P       +R    + ++LLVP E+++P   L + G+FV+QRV+DIG+PQF  FLRRDY RW+ GDD RA VA
Sbjct:  182 MSIVGTKIKPVLFVRVEVQPENSMANIMVERVELDGSEAVRSAGGSFNVSSSTVVSCAKKEGTPADANIMELRASSNIAIELLVPNENFVPVGVLRRAGNFVMQRVVDIGLPQFTYFLRRDYARWAEGDDDRAAVA 317          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A4D9DB49_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB49_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.960e-12
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   79 ISIESVELEGSEAVRSIRGAYNEIGQPTASFIPAATPPMRL---QVTLRVDLLVPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPVA 387
            ++I  ++L GS       G +    +   SF     P  +     V+++V   VPR + +P   LE GGS V+Q +L + VP+F++ L +DYE WS+GDDSRA VA
Sbjct:   89 LNIYRLDLTGSRIADIANGTFKVKARNVVSFRNTDMPRTKALMSTVSVQVQAQVPRGNVIPHHVLESGGSLVIQGILKVMVPRFVKILAKDYEVWSSGDDSRAAVA 194          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A7S3C1G7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C1G7_9VIRI)

HSP 1 Score: 64.3 bits (155), Expect = 4.930e-10
Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    4 NFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAYNEIGQPTASFIPAATPPMRL---QVTLRVDLLVPRESWLPPT-ALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSR 375
             F G  V PVL ++V   A   T  IS+ S EL+GS  + +    ++   +   S+        +L    V+L VD+ VP    L PT AL   GS VLQ +L+I VP F+R L  DY  W+AGDDSR
Sbjct:   53 GFLGVRVEPVLTLQVATGARGCT--ISLLSTELQGSSLIVAQNDKFDARMRNEVSYNEGEAAGEKLITSSVSLEVDVQVPWAFRLLPTKALSASGSGVLQAMLNIMVPSFVRQLEGDYCAWAAGDDSR 178          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: W7TD01_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TD01_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.820e-10
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  229 VPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPVA 387
            VPR + +P   LE GGS V+Q +L + VP+F++ L +DYE WS+GDDSRA VA
Sbjct:   10 VPRGNVIPHHVLESGGSLVIQGILKVMVPRFVKILAKDYEVWSSGDDSRAAVA 62          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A0G4IAI8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IAI8_9ALVE)

HSP 1 Score: 62.8 bits (151), Expect = 5.750e-9
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  181 ATPPMRLQVTLRVDLLVPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPVA 387
            A P +  ++ ++V   VP+ + +P   +E  GSFVLQR+L+I +P+FL+ LR D++RWSAG   R+ ++
Sbjct:  248 APPMIETKMEIKVSAKVPKRTLVPARIVEATGSFVLQRILNIILPRFLKQLRADFDRWSAGSADRSALS 316          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A8J4LM18_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LM18_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.480e-7
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  208 TLRVDLLVPR-ESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPV 384
            T++V + VP   S+LP   +E  GS V+Q VL++ VP+FL+ LR DYE W++GD SR PV
Sbjct:  221 TIQVCVEVPPWSSFLPVATIESVGSSVMQNVLNLMVPRFLKQLRSDYELWASGDVSRRPV 280          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A8K0IMY2_COCNU (Uncharacterized protein n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0IMY2_COCNU)

HSP 1 Score: 55.8 bits (133), Expect = 4.580e-7
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 1
Query:    1 LNFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAYNEIGQPTAS----FIPAATPPMRLQVTLRVDLLVPRE-SWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPV 384
            + FF   V PVL +RV+ +       I + S +LEGS  V +    ++       S       +   P+    T+ V + +P     +P  A+E  G+ VL+++L I +P+FLR L +DY  W++GD SR P+
Sbjct:   31 IKFFAFEVCPVLVVRVDEEPDGCC--IRLLSCKLEGSPLVEAQNDKFSASMVNRVSCNGGMQNSGMQPLTTDTTIEVSIEIPFAFRAIPVEAIESTGTQVLEQLLRIMLPRFLRQLVKDYRAWASGDTSRQPL 161          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: Q10RT4_ORYSJ ((RAP Annotation release2) Galactose-binding like domain containing protein n=12 Tax=Oryzeae TaxID=147380 RepID=Q10RT4_ORYSJ)

HSP 1 Score: 56.2 bits (134), Expect = 7.120e-7
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    4 NFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAY-----NEI---GQPTASFIPAATPPMRLQVTLRVDLLVPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPV 384
             FF   V PVL +RV+ +       IS+ S +LEGS  V +    +     N++      + S     T    ++VT  +D+  P  + LP  A+E  G  VL+++L + +P+FL+ L +DY+ W++GD SR P+
Sbjct:   96 RFFALEVCPVLLVRVDEEPNGCC--ISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNSSMSDSTSQQLTSDTTIEVT--IDIPFPFRA-LPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAWASGDSSRKPL 225          
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Match: A0A3B6JQI4_WHEAT (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A3B6JQI4_WHEAT)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-6
Identity = 40/134 (29.85%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    4 NFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAYNEIGQPTASFIPAATPPMRLQ-------VTLRVDLLVPRESWLPPTALEKGGSFVLQRVLDIGVPQFLRFLRRDYERWSAGDDSRAPV 384
             FF   V PVL +RV+ +       I + S +LEGS  V +    ++        F  +++    LQ       + + +D+  P ++ LP  A+E  G  VL+++L + +P+FL+ L +DY+ W++GD SR P+
Sbjct:  100 RFFALEVCPVLLVRVDEEPNGCC--IRLLSCKLEGSPLVEAQNDKFSA-SMVNRVFCNSSSEGSTLQQLTSDATIEVAIDIPFPFQA-LPVEAIESSGRQVLEQLLRVMLPRFLKQLDKDYQAWASGDSSRKPL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A836CCG5_9STRA1.370e-3046.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8N2_ECTSI1.470e-2844.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DB49_9STRA4.960e-1236.79Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3C1G7_9VIRI4.930e-1039.06Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
W7TD01_9STRA6.820e-1054.72Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A0G4IAI8_9ALVE5.750e-940.58Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J4LM18_9CHLO1.480e-750.00Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8K0IMY2_COCNU4.580e-730.83Uncharacterized protein n=1 Tax=Cocos nucifera Tax... [more]
Q10RT4_ORYSJ7.120e-731.85(RAP Annotation release2) Galactose-binding like d... [more]
A0A3B6JQI4_WHEAT1.020e-629.85Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16978contigP-wetherbeei_contig16978:258..1380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog41875.XP_007515807.1
PFAMsDUF1997
Model size390
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.51e-11
EggNOG OGs2CN26@1|root,2QTF3@2759|Eukaryota,37NMJ@33090|Viridiplantae,34I4H@3041|Chlorophyta
Ec32 ortholog descriptionProtein of unknown function DUF1997
Ec32 orthologEc-22_002370.1
DescriptionProtein of unknown function (DUF1997)
Cds size390
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.7578375-CDS-P-wetherbeei_contig16978:257..4021683186103.7578375-CDS-P-wetherbeei_contig16978:257..402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16978 258..402 +
1683186103.7671676-CDS-P-wetherbeei_contig16978:1135..13801683186103.7671676-CDS-P-wetherbeei_contig16978:1135..1380Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16978 1136..1380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16978.1.1prot_P-wetherbeei_contig16978.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16978 258..1380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16978.1.1

>prot_P-wetherbeei_contig16978.1.1 ID=prot_P-wetherbeei_contig16978.1.1|Name=mRNA_P-wetherbeei_contig16978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
LNFFGTAVAPVLYIRVNVDAAAATANISIESVELEGSEAVRSIRGAYNEI
GQPTASFIPAATPPMRLQVTLRVDLLVPRESWLPPTALEKGGSFVLQRVL
DIGVPQFLRFLRRDYERWSAGDDSRAPVA*
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mRNA from alignment at P-wetherbeei_contig16978:258..1380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16978.1.1 ID=mRNA_P-wetherbeei_contig16978.1.1|Name=mRNA_P-wetherbeei_contig16978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1123bp|location=Sequence derived from alignment at P-wetherbeei_contig16978:258..1380+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAACTTTTTCGGCACAGCAGTGGCGCCAGTGCTGTATATCCGGGTCAA TGTGGATGCGGCGGCGGCGACGGCCAACATCAGCATCGAGTCAGTGGAGC TCGAGGGCAGCGAGGCTGTCCGCAGCATCCGGGGCGCCTACAATGGTGCC TTTTTTCCTTTCTTTCTTGTCTGTTTTTATTGGACTTCAAAGGAATCTGC CTTAAAAGGTGTCATGACTGGTATTCAGTCGGTTCCACCTCGACTTCGGC TGCGTTCTGTCCTTTTGGAAATCATATGGTCTATCGGATGTTTCATTCTC GTGGAACTTGCGGGGCTTCGCCACTCCTGCCACAGCGCGCTTTGGGCTCC AGTATGTAAGGGTCTCTCGCCCGTTCTCCTGAACCTTTTCCACGAGCAGT TAGCTGCAGCAACGTCGTGTCGTTCACGACGGAGCCAAGGCGGCAGCGTA GCCGCCTGGCAGCCCTCCTCGGGCGCGGCACGGACAGGGGCGGCGAGGAC GACGAGGAAGACGACGCTGTTGCCAGCAGCGGCGGCCGGGGTGATGCGGC AGCGCCAGAGCCGGCGAAAGGTGTCACCGGCGGCGGCCGAACGGTCAAGG CAATTACTAGCACGGTGAGCGAAAGATGGTTTCAGAAACTGTTGCAACCG ACGCTGAATTGGCTGGCTGGTTCCAGCTTCAGTTGCTCTTGGGTTTGCGT GGAAGCTTAAAATGCCATTTTTTAACATTCTATAGAAGCTACCGATCGCT ATGGTATGTTTCCTTGCTGACGCTGTTATGCCTGGTGAGGAAGCGTCACT GCACTTTTTGAAAACGGAAAGACGGCGCCGGATGTCTTGCCTGTTCTGGA ATTGAACCTTTAAAAATGCCGTTACCAGAAATCGGCCAACCAACTGCCTC TTTTATTCCCGCCGCCACGCCTCCAATGCGGCTGCAGGTGACCCTCCGCG TCGACCTGCTGGTGCCGCGGGAGAGCTGGCTGCCGCCGACGGCACTCGAG AAAGGCGGCTCCTTCGTGCTGCAGCGAGTGCTCGACATCGGTGTGCCGCA GTTCCTGCGCTTCCTCCGCCGCGACTACGAGCGGTGGTCCGCCGGAGACG ACTCGCGGGCACCCGTCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16978:258..1380+

>mRNA_P-wetherbeei_contig16978.1.1 ID=mRNA_P-wetherbeei_contig16978.1.1|Name=mRNA_P-wetherbeei_contig16978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig16978:258..1380+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAACTTTTTCGGCACAGCAGTGGCGCCAGTGCTGTATATCCGGGTCAA
TGTGGATGCGGCGGCGGCGACGGCCAACATCAGCATCGAGTCAGTGGAGC
TCGAGGGCAGCGAGGCTGTCCGCAGCATCCGGGGCGCCTACAATGAAATC
GGCCAACCAACTGCCTCTTTTATTCCCGCCGCCACGCCTCCAATGCGGCT
GCAGGTGACCCTCCGCGTCGACCTGCTGGTGCCGCGGGAGAGCTGGCTGC
CGCCGACGGCACTCGAGAAAGGCGGCTCCTTCGTGCTGCAGCGAGTGCTC
GACATCGGTGTGCCGCAGTTCCTGCGCTTCCTCCGCCGCGACTACGAGCG
GTGGTCCGCCGGAGACGACTCGCGGGCACCCGTCGCCTGA
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