mRNA_P-wetherbeei_contig16944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16944.1.1
Unique NamemRNA_P-wetherbeei_contig16944.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 9.220e-43
Identity = 70/144 (48.61%), Postives = 100/144 (69.44%), Query Frame = 1
Query:   10 LVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHR 441
            +V   +DVE+ GVR +DS +WD+H  +LSP  F+ RT AEL +   F +PIA+ + +QL  + R  P W  EG  AP G+++ T+ IDVR + +++RDR++WDV+CP NSPE FAR TVADL LP E+E  IA+T H+Q++  R
Sbjct:   12 VVCCNVDVEIGGVRFVDSVMWDIHQSSLSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFR 155          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A835YTF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.030e-36
Identity = 73/152 (48.03%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 REFLVPLRIDVELEG-VRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAA---PVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQ 444
            R  L+P+RID+  EG +R +DS +WD  D  LSPEAFAA T A+L LP + E P+AR +  Q+       P W     AA   P G++LV +++++R   ++YRD+ EWD++ PLNSPEAFA +TVADL LP  +E AIA+ + EQ+AN+RQ
Sbjct:  499 RAALLPVRIDLRSEGGLRYVDSLLWDAADAALSPEAFAAATAADLALPRKLEAPLARAIRAQVVTAQATLPVWSGSSGAAAMYPAGEALVPIELELRLGAVLYRDKFEWDMNEPLNSPEAFAARTVADLALPQPMEPAIALALREQLANYRQ 650          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A329S0R6_9STRA (Uncharacterized protein n=39 Tax=Phytophthora TaxID=4783 RepID=A0A329S0R6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.260e-23
Identity = 58/151 (38.41%), Postives = 95/151 (62.91%), Query Frame = 1
Query:   10 LVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRCG 462
            L+P+R+D+++EG R +DS  W+L++++ + E FAA  V +L LP  F + IA+ + EQ+    ++ P W    N A  G+SL  + I++R    +Y DR EWD++ P NSPE FA+    DL L  E EA +A+++ EQ+ ++ + L+R G
Sbjct:  135 LIPIRLDIDVEGYRYIDSFSWNLYEKDFTYETFAAALVRDLDLPNCFYKRIAKSIREQVEKAKKSLP-W----NEAVTGESLHPIFINLRLNDTIYIDRFEWDLNNPNNSPERFAQVVCEDLGLSGEFEAQVALSIREQLRDYSR-LIREG 279          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A0S6XIH8_BLOB1 (Uncharacterized protein n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XIH8_BLOB1)

HSP 1 Score: 102 bits (254), Expect = 2.240e-22
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 REFLVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLR-----YFARAFPAWLSEGNAAPVG---------DSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNL 450
            +E LVPLRID+ELE +RL D+  W+LHD+ +SP+ FA   V +L++PA     IARQ+H  ++     Y+   +PA    G AA  G         D  +T+ +++    +   D+ EWD++ P NSPE FA Q   DL L  E   AIA ++ EQ   + ++L
Sbjct:  229 QEDLVPLRIDIELEKLRLRDTFTWNLHDRTVSPKLFADALVEDLQVPAEHRDNIARQVHRDIKEQLENYYPPVWPA----GEAAEPGLPYWAHKNDDMRITIRLNITVGHITLVDQFEWDINNPQNSPEDFALQMARDLSLSGEFTTAIAHSIREQSQLYTKSL 388          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: V9F6J2_PHYPR (HTH cro/C1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=V9F6J2_PHYPR)

HSP 1 Score: 100 bits (249), Expect = 2.540e-22
Identity = 56/151 (37.09%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   10 LVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRCG 462
            L+P+R+D+++EG R +DS  W+ ++++ + E FAA  V +L LP  F + IA+ + EQ+    +  P W    + A  G+SL  + I++R    +Y DR EWD++ P NSPE FA+    DL L  E EA +A+++ EQ+ ++ + L+R G
Sbjct:  138 LIPIRLDIDVEGYRYIDSFSWNFYEKDFTYETFAAALVRDLDLPNCFYKRIAKSIQEQVEKAQKLLP-W----SEAVTGESLHPIFINLRLNDTIYIDRFEWDLNNPNNSPERFAQVVCEDLGLSGEFEAQVALSIREQLRDYSR-LIREG 282          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A0W8CBZ9_PHYNI (Chromatin structure-remodeling complex protein BSH n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CBZ9_PHYNI)

HSP 1 Score: 100 bits (250), Expect = 3.080e-22
Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:   10 LVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRC 459
            L+P+R+D+++EG R +DS  W+ ++++ + E FAA  V +L LP  F + IA+ + EQ+    +  P W    + A  G+SL  + I++R    +Y DR EWD++ P NSPE FA+    DL L  E EA +A+++ EQ+ ++ +   +C
Sbjct:  101 LIPIRLDIDVEGYRYIDSFSWNFYEKDFTYETFAAALVRDLDLPNCFYKRIAKSIQEQVEKAQKLLP-W----SEAVTGESLHPIFINLRLNDTIYIDRFEWDLNNPNNSPERFAQVVCEDLGLSGEFEAQVALSIREQLRDYSRVSKQC 245          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A2D4BHJ2_PYTIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHJ2_PYTIN)

HSP 1 Score: 101 bits (252), Expect = 3.480e-22
Identity = 59/151 (39.07%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   10 LVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRCG 462
            L+P+R+DV++EG R +DS  W+LH+++ + E FAA  V +L LP  F + IA  +  Q+    R+ P W    N     +SL  + I++R +  +Y DR EWD+S P N PE FA+    DL L  E EA IA+++ EQ+ ++ + L+R G
Sbjct:  123 LIPIRLDVDVEGHRFIDSFAWNLHEKDFTYETFAASLVQDLDLPECFLKRIAASIEAQVEKAKRSMP-WXDAMNT----ESLHPIFINLRLQDTLYMDRFEWDLSDPRNDPELFAQTVCDDLGLSGEFEAQIALSIREQLRDYSR-LIREG 267          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A0P1B619_PLAHL (Swi snf-related matrix-associated actin-dependent regulator of n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B619_PLAHL)

HSP 1 Score: 100 bits (250), Expect = 5.300e-22
Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    4 EFLVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRCG 462
            E L+P+R+D+++EG R +DS  W+LH++  + E FAA  V +L LP  F + I + + EQ+ + A+A   W    + A  G+SL  + I++R    +Y DR EWD++   NSPE FA+    DL L  E EA +A+++ EQ+ ++ + L+R G
Sbjct:  135 ELLIPIRLDIDIEGYRFIDSFSWNLHEKEFTFETFAAALVRDLDLPNCFYQRITKSIQEQV-HKAQAVLPW----HEAVTGESLHPIYINLRLCDTIYTDRFEWDLNNTSNSPERFAQVVCEDLGLSGEFEAQVALSIREQLHDYSK-LIREG 281          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A8K1C671_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C671_PYTOL)

HSP 1 Score: 100 bits (249), Expect = 8.500e-22
Identity = 58/151 (38.41%), Postives = 92/151 (60.93%), Query Frame = 1
Query:   10 LVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARFERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRCG 462
            LVP+R+DV++EG R +DS  W+L++++ + E +AA  V +L LP  F + IA  +  Q+    R+ P W    + A   +SL  + I++R    +Y DR EWD+S P N PE FA+Q   +L L  E EA IA+++ EQ+ ++ + L+R G
Sbjct:  138 LVPIRLDVDVEGYRYIDSFSWNLYEKDFTYETYAAALVRDLELPEIFHKRIAGSIEAQVEKAKRSLP-W----HDAVATESLHPIFINIRLNDTLYMDRFEWDLSNPRNDPELFAQQVCEELGLSGEFEAQIALSIREQLRDYSR-LIREG 282          
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Match: A0A1X0QZL5_RHIZD (SNF5-domain-containing protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A1X0QZL5_RHIZD)

HSP 1 Score: 99.4 bits (246), Expect = 9.880e-22
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 REFLVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLP-ARFERPIARQLHEQLRYF--ARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYRDRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNLLRCG 462
            +E LVP+RID+E+EG +L D+  W+L++  ++ E FA     +LRLP + F  PIA+ + EQL  +  + A P    E        +++ LDI V +K L+  D+ EWDV CP NSPE FA + V +L L  E + AIA  + EQI  ++++LL  G
Sbjct:  117 QECLVPIRIDLEIEGYKLRDTFTWNLNETLITHEQFAEVICLDLRLPPSLFVEPIAKSIKEQLEDYNLSAATPQETDELK------TIIKLDITVGNKELI--DQFEWDVGCPKNSPEEFAEKLVTELGLGGEFKTAIAHLIREQIHVYKKSLLVLG 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN49_ECTSI9.220e-4348.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTF3_9STRA8.030e-3648.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A329S0R6_9STRA2.260e-2338.41Uncharacterized protein n=39 Tax=Phytophthora TaxI... [more]
A0A0S6XIH8_BLOB12.240e-2237.80Uncharacterized protein n=1 Tax=Fungal sp. (strain... [more]
V9F6J2_PHYPR2.540e-2237.09HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
A0A0W8CBZ9_PHYNI3.080e-2236.00Chromatin structure-remodeling complex protein BSH... [more]
A0A2D4BHJ2_PYTIN3.480e-2239.07SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A0P1B619_PLAHL5.300e-2237.91Swi snf-related matrix-associated actin-dependent ... [more]
A0A8K1C671_PYTOL8.500e-2238.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1X0QZL5_RHIZD9.880e-2240.13SNF5-domain-containing protein n=4 Tax=Rhizopus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16944contigP-wetherbeei_contig16944:575..1036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN49
PFAMsHMG_box,SNF5
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K09530,ko:K11648,ko:K12662
KEGG Pathwayko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141
Exons1
Evalue1.51e-43
EggNOG OGsKOG1649@1|root,KOG1649@2759|Eukaryota
Ec32 ortholog descriptionSNF5
Ec32 orthologEc-06_008390.1
Descriptionchromatin disassembly
Cds size462
COG categoryK
BRITEko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186102.8918302-CDS-P-wetherbeei_contig16944:574..10361683186102.8918302-CDS-P-wetherbeei_contig16944:574..1036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16944 575..1036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16944.1.1prot_P-wetherbeei_contig16944.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16944 575..1036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16944.1.1

>prot_P-wetherbeei_contig16944.1.1 ID=prot_P-wetherbeei_contig16944.1.1|Name=mRNA_P-wetherbeei_contig16944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
REFLVPLRIDVELEGVRLLDSAVWDLHDQNLSPEAFAARTVAELRLPARF
ERPIARQLHEQLRYFARAFPAWLSEGNAAPVGDSLVTLDIDVRSKWLVYR
DRVEWDVSCPLNSPEAFARQTVADLQLPIELEAAIAVTMHEQIANHRQNL
LRCG
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mRNA from alignment at P-wetherbeei_contig16944:575..1036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16944.1.1 ID=mRNA_P-wetherbeei_contig16944.1.1|Name=mRNA_P-wetherbeei_contig16944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig16944:575..1036+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGAGTTTTTGGTGCCACTGAGGATCGACGTCGAGCTGGAGGGCGTCCG GCTCCTCGACTCGGCCGTCTGGGACCTCCACGACCAAAATCTCTCGCCCG AGGCCTTTGCGGCGAGGACAGTCGCGGAACTGCGGCTGCCGGCGCGCTTC GAGCGCCCGATTGCGCGCCAGCTGCACGAACAGCTTCGCTACTTTGCCCG GGCCTTTCCCGCATGGCTCAGCGAGGGCAACGCCGCGCCAGTCGGCGACA GCCTCGTGACGCTCGACATCGACGTGCGGAGCAAGTGGCTCGTATACCGC GACCGCGTCGAATGGGATGTCAGCTGTCCGTTGAATAGCCCGGAGGCGTT CGCCCGCCAGACTGTCGCTGACTTGCAGCTGCCGATCGAGCTAGAGGCCG CCATTGCCGTCACGATGCACGAGCAGATTGCCAACCACCGACAAAACTTG CTCCGGTGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16944:575..1036+

>mRNA_P-wetherbeei_contig16944.1.1 ID=mRNA_P-wetherbeei_contig16944.1.1|Name=mRNA_P-wetherbeei_contig16944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig16944:575..1036+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGAGTTTTTGGTGCCACTGAGGATCGACGTCGAGCTGGAGGGCGTCCG
GCTCCTCGACTCGGCCGTCTGGGACCTCCACGACCAAAATCTCTCGCCCG
AGGCCTTTGCGGCGAGGACAGTCGCGGAACTGCGGCTGCCGGCGCGCTTC
GAGCGCCCGATTGCGCGCCAGCTGCACGAACAGCTTCGCTACTTTGCCCG
GGCCTTTCCCGCATGGCTCAGCGAGGGCAACGCCGCGCCAGTCGGCGACA
GCCTCGTGACGCTCGACATCGACGTGCGGAGCAAGTGGCTCGTATACCGC
GACCGCGTCGAATGGGATGTCAGCTGTCCGTTGAATAGCCCGGAGGCGTT
CGCCCGCCAGACTGTCGCTGACTTGCAGCTGCCGATCGAGCTAGAGGCCG
CCATTGCCGTCACGATGCACGAGCAGATTGCCAACCACCGACAAAACTTG
CTCCGGTGCGGC
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