mRNA_P-wetherbeei_contig1679.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1679.1.1
Unique NamemRNA_P-wetherbeei_contig1679.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1679.1.1 vs. uniprot
Match: A0A1Y1IBL0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBL0_KLENI)

HSP 1 Score: 68.9 bits (167), Expect = 3.330e-8
Identity = 86/312 (27.56%), Postives = 120/312 (38.46%), Query Frame = 2 
Query:  854 TMFPRGRREPLRSYCGLEMWNSRGNMDHRRAILAMLGDEYAYYETPLFTAYKLLALGR-------IHELGRAVRPSASDHGWAEEP---DTQHGYD------QFFAEAAETAF----SGGLAALFPRAATEAEAVAVAKALVDEGFYMEADIARDRYLGFDFEGLKLAAAEGWAPDFDPYYRIDDPYFMLFSSLCYRKAAALYGNRKRXXXXXXXXXXXXXXYAAALGAGLAVLVLSPAARLRGLDYSFFRLQESLTAQWWGERVRPATRLTQRNFRAMATAAEPGICLCERETDFTEIITPGYQRPQDIEG 1729
            T  PRG R+  R+Y G ++WNSRG M+  +A+ AMLGD +AYYET LFT YK+  L +       ++   R   P+  D  W +       + G        Q+F E            GLA +     +EA AV  A+ L+D  F   A + R        E L      G   D       +DPY  L+SS        +YG                            V+VL+P  R RGLD +F++ +                                    C    D++EI+TPGY+ P  IEG
Sbjct:   66 TGLPRGVRQ--RTYAGTDLWNSRG-MNLTQAVRAMLGDPFAYYETALFTVYKMALLNQTATLPYLVYAWDRGHWPTTEDGPWPQYKVPVGRKRGLKGFLLAVQYFKELVRDIVPAIADSGLAEV-GAGLSEAAAVCRARLLLDHRF---ARLGR--------EALDQTYLLGVGNDLG-----EDPYDCLYSSSSQGLTNEVYGPD--------------------------VVVLAPDHRKRGLDLNFYQDR-----------------------------------FCPHSHDYSEILTPGYRFPDAIEG 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1679.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y1IBL0_KLENI3.330e-827.56Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1679contigP-wetherbeei_contig1679:377..3768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2400
Hectar predicted targeting categoryother localisation
Exons5
Cds size1824
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1679.1.1prot_P-wetherbeei_contig1679.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1679 1152..3694 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.618647-UTR-P-wetherbeei_contig1679:376..8401683186097.618647-UTR-P-wetherbeei_contig1679:376..840Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1679 377..840 +
1683186097.6332133-UTR-P-wetherbeei_contig1679:1113..11511683186097.6332133-UTR-P-wetherbeei_contig1679:1113..1151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1679 1114..1151 +
1683186097.6840007-UTR-P-wetherbeei_contig1679:3694..37681683186097.6840007-UTR-P-wetherbeei_contig1679:3694..3768Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1679 3695..3768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.6500309-CDS-P-wetherbeei_contig1679:1151..15221683186097.6500309-CDS-P-wetherbeei_contig1679:1151..1522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1679 1152..1522 +
1683186097.6602178-CDS-P-wetherbeei_contig1679:1638..17871683186097.6602178-CDS-P-wetherbeei_contig1679:1638..1787Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1679 1639..1787 +
1683186097.6683142-CDS-P-wetherbeei_contig1679:2121..23691683186097.6683142-CDS-P-wetherbeei_contig1679:2121..2369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1679 2122..2369 +
1683186097.6761642-CDS-P-wetherbeei_contig1679:2638..36941683186097.6761642-CDS-P-wetherbeei_contig1679:2638..3694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1679 2639..3694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1679.1.1

>prot_P-wetherbeei_contig1679.1.1 ID=prot_P-wetherbeei_contig1679.1.1|Name=mRNA_P-wetherbeei_contig1679.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=608bp
MPLEAGFVGSVNSPPSLASRCRHVQEAADDKKQKALKRTQTVTPAMRRPW
AATAACSAATAALTSSLLLPFNDEGFTMWDSDPSKTLGAKEPAPSVSFEE
WESRAPTLTAASSSGQETMFPRGRREPLRSYCGLEMWNSRGNMDHRRAIL
AMLGDEYAYYETPLFTAYKLLALGRIHELGRAVRPSASDHGWAEEPDTQH
GYDQFFAEAAETAFSGGLAALFPRAATEAEAVAVAKALVDEGFYMEADIA
RDRYLGFDFEGLKLAAAEGWAPDFDPYYRIDDPYFMLFSSLCYRKAAALY
GNRKREGGGGGGNGSYGGGYAAALGAGLAVLVLSPAARLRGLDYSFFRLQ
ESLTAQWWGERVRPATRLTQRNFRAMATAAEPGICLCERETDFTEIITPG
YQRPQDIEGLERGAFAFYKVGAAAGPVTVICLRNDGRCVSQPEPGGPFYF
CGERECAEDPDSCGPPPIVALEPPVVVPVLAAFCAVPARSGLGGGSADSG
AAATAAVVAAREVASEALVRVAGGKAEAAGGQPQPAAAATLAARGLPPSF
WLSLHGLRFTEGGEGASNVVAAVYLDTAGATRELAIGAADVERPDAATVL
RQRAAVS*
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mRNA from alignment at P-wetherbeei_contig1679:377..3768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1679.1.1 ID=mRNA_P-wetherbeei_contig1679.1.1|Name=mRNA_P-wetherbeei_contig1679.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3392bp|location=Sequence derived from alignment at P-wetherbeei_contig1679:377..3768+ (Phaeothamnion wetherbeei SAG_119_79)
GGGTGCGCTCTCATGATCCATATGCTTGAAAGACCTCCAAAGGGTAAGGA
TTTATTAGAACCCGAGGGGAGGAGGCGGGAATGGACTGCGCATGGGTCGT
CATTGTCGCGGCTTTCCGCTCACATGCCGTTCCTTCTCTCGATGTAGGGG
TTGTCCTCGTTGCCTGAGCAACCTGCTGTGCTGTCTTGTCCGTTTGTACG
ATAGAACTATCGCTGCCTTCCACTACTACTCGACGATAGCACCATAGCAC
CTTGCAGGCGTTGCAAGCAGAAGAGGGCATGTGTGCCCGAGCCCGACGTC
AAGGAACTCTGTGGCAAGCCGCTGCCGGCCCCCACCGACGCCGCTGCCGG
CCCCCACCGACGCCGCTGCCGCCGCGGCCTCGGGCGGCACCGCGCTGCCG
TCGGTGCTGGCCGTGCTGGTAGAGGCGGCCGACCTGGCGTCGCTGCTGCT
GCCCGCCGGCCGTGCTGCGGAGGCGGGGGAGGGGGAGGAGAAGTCGGAGG
GGGGGAATGGGATTCCTTCAAGCAAGCTGAAGCCCTTTTGCGCACTTGCC
TCGCTCCACATCTACTTTGCCTGCAGAATATCCTTTTTGAACAGGGCTTC
CCTCCCTGCAAGCAAATCGACCGACGGCTCAATCCGTTTCCGGAATGTTT
GTTTTGTGCCTTCCTTTTTTAACGGGGACGATCTCGCTGCCTACTCGTTT
TCCATCGGAGCTACCTCGCTGTCGACAGCATTCTTACCACGACAACGGAG
GGGTGTAGCAAGTCTCGTGGCATTGATGCCGCTGGAAGCCGGCTTCGTGG
GTTCGGTCAACTCGCCGCCGTCGTTGGCTTCACGCTGTCGACATGTACAG
GAGGCGGCCGACGACAAAAAACAGAAGGCCCTGAAACGGACACAAACGGT
AACTCCGGCAATGCGGCGCCCGTGGGCGGCGACGGCAGCATGCAGCGCCG
CGACGGCTGCTCTTACGTCATCGTTGCTGCTGCCATTCAACGATGAAGGC
TTTACGATGTGGGACAGCGATCCTTCGAAGACCTTGGGAGCGAAGGAGCC
GGCGCCATCTGTAAGCTTTGAGGAATGGGAATCGCGGGCCCCCACCTTGA
CTGCGGCATCTTCGTCTGGACAGGAAACTATGTTCCCGCGAGGCAGGTTT
GTCGGCGATGAGAAAGCAAGCAACCCCTTTCTGAAAAAGGGGATCGAACA
CCGCGCTGACGAAAGGTTGATGACAATGATTTTATCTGTCCGAATTCACT
TTGTAATGCCAGGCGGGAGCCGCTGCGGTCATATTGCGGGTTGGAAATGT
GGAATTCCCGAGGTAACATGGACCATCGACGAGCGATCCTCGCCATGCTA
GGCGACGAGTATGCCTATTACGAGACGCCGCTCTTCACCGCCTATAAGCT
TCTCGCCCTCGGTAAGCCTTTTCTATGGAGCTGTTGCGTGGTTGCCCTTT
GCACTTTGTCAAACCGATGGAATGGGCCGTCAGACTTGGGCACCAGCAGT
GCTCAGGACGACGTGATGAAGCTCCGAGGAACGAATATGGATGAATTGAC
TTCTTTTCATGAAGACTGGAGCGGATTAGAATGCGTCATCTTCAACGTCA
CAGTATCAAGAGTACACGATATCTCCACCAGCCAGATCTCATTACTACTA
GCGTTTCTGTCTGGTGCATTCACCATTATGCGCCGGTCAATCCTCACTGC
AGCTTCTGCTCTGTTCTTGACGCCGCACCTTGCCCATGATTTCAGGCCGC
ATCCATGAGCTGGGGCGTGCAGTGCGTCCGTCCGCCAGCGACCACGGCTG
GGCCGAGGAGCCCGACACGCAGCACGGCTACGACCAGTTTTTTGCCGAGG
CCGCGGAGACCGCCTTCTCCGGCGGGCTCGCGGCCCTTTTCCCGCGGGCG
GCGACGGAGGCGGAAGCCGTCGCGGTCGCCAAGGCCTTGGTGGACGAGGG
ATTTTACATGGAGGCCGACATCGCCAGAGATCGTTACCTGGGGGTGAGTT
TCTTCATATCCTCGGGGTCAGCTGCCTTCTTTCTGCGGTCGGTCTTAACC
TACTTGTTTGCGTACGATGTTTCGCGTTGATAAATGAAGAGCTATGATGG
GCACTTTCTTTTCTTTGTCCTTAGCGGCTCCAAGTTGGGGTTGTGCTTTC
GGTTATCCATTTCCCCCCTCTGCTTCCCCTCTGCCCTTCCTTTGCTTTCA
CCACGGCCCCACCATGAACTTCCCCTCGTGAAGCCTTCCTCCCTCATGAT
TCATCCCGGCAGTTCGACTTTGAAGGCCTGAAGCTGGCAGCCGCCGAGGG
GTGGGCGCCCGACTTCGACCCGTACTATCGCATCGATGACCCCTACTTCA
TGCTCTTCAGCTCCCTCTGCTACCGAAAAGCGGCTGCCTTGTACGGCAAC
CGGAAGCGGGAAGGGGGCGGCGGCGGCGGCAACGGCAGCTACGGAGGTGG
TTACGCGGCCGCCCTCGGCGCGGGGCTGGCGGTGCTTGTGCTCTCGCCGG
CGGCGCGGCTCCGTGGCCTCGACTACTCATTCTTCCGCCTCCAGGAATCG
CTGACGGCGCAATGGTGGGGCGAGCGGGTCCGGCCGGCGACGCGGCTGAC
GCAGCGCAACTTTCGGGCGATGGCCACCGCGGCTGAGCCCGGCATTTGCC
TCTGCGAGCGGGAGACAGACTTCACAGAGATCATCACGCCGGGCTACCAG
CGGCCGCAGGACATTGAAGGTCTCGAGCGCGGCGCCTTTGCCTTTTACAA
GGTCGGCGCGGCGGCCGGCCCCGTCACCGTCATCTGCCTGCGGAACGACG
GCCGCTGCGTTTCCCAGCCGGAGCCCGGAGGCCCGTTCTACTTCTGCGGA
GAGCGTGAGTGCGCGGAGGACCCCGATTCGTGCGGTCCGCCACCGATTGT
GGCCCTGGAGCCGCCGGTCGTTGTCCCCGTGCTCGCCGCATTCTGCGCTG
TGCCCGCGCGATCTGGGTTAGGCGGCGGCTCTGCCGATTCCGGCGCGGCA
GCGACGGCGGCGGTGGTGGCTGCGAGGGAAGTGGCCAGCGAAGCCCTCGT
CCGTGTGGCGGGAGGAAAAGCAGAAGCCGCAGGAGGCCAGCCGCAACCCG
CCGCAGCGGCGACCTTGGCAGCCAGAGGACTGCCGCCGAGCTTTTGGTTG
TCGTTGCATGGCCTGCGGTTTACGGAAGGCGGCGAGGGCGCGAGCAATGT
GGTGGCGGCCGTTTATTTGGACACCGCCGGAGCGACGAGGGAGCTGGCAA
TTGGCGCGGCAGATGTGGAGAGACCAGACGCTGCAACAGTGCTCCGGCAG
AGGGCCGCGGTTTCCTGAGAAGGAAAGTTAGCCTTGTTATTCAGCGCACC
ACAACCCTTTACCCTAGCAGTAATGTTTACACTTAGCATCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1679:377..3768+

>mRNA_P-wetherbeei_contig1679.1.1 ID=mRNA_P-wetherbeei_contig1679.1.1|Name=mRNA_P-wetherbeei_contig1679.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1824bp|location=Sequence derived from alignment at P-wetherbeei_contig1679:377..3768+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGGAAGCCGGCTTCGTGGGTTCGGTCAACTCGCCGCCGTCGTT
GGCTTCACGCTGTCGACATGTACAGGAGGCGGCCGACGACAAAAAACAGA
AGGCCCTGAAACGGACACAAACGGTAACTCCGGCAATGCGGCGCCCGTGG
GCGGCGACGGCAGCATGCAGCGCCGCGACGGCTGCTCTTACGTCATCGTT
GCTGCTGCCATTCAACGATGAAGGCTTTACGATGTGGGACAGCGATCCTT
CGAAGACCTTGGGAGCGAAGGAGCCGGCGCCATCTGTAAGCTTTGAGGAA
TGGGAATCGCGGGCCCCCACCTTGACTGCGGCATCTTCGTCTGGACAGGA
AACTATGTTCCCGCGAGGCAGGCGGGAGCCGCTGCGGTCATATTGCGGGT
TGGAAATGTGGAATTCCCGAGGTAACATGGACCATCGACGAGCGATCCTC
GCCATGCTAGGCGACGAGTATGCCTATTACGAGACGCCGCTCTTCACCGC
CTATAAGCTTCTCGCCCTCGGCCGCATCCATGAGCTGGGGCGTGCAGTGC
GTCCGTCCGCCAGCGACCACGGCTGGGCCGAGGAGCCCGACACGCAGCAC
GGCTACGACCAGTTTTTTGCCGAGGCCGCGGAGACCGCCTTCTCCGGCGG
GCTCGCGGCCCTTTTCCCGCGGGCGGCGACGGAGGCGGAAGCCGTCGCGG
TCGCCAAGGCCTTGGTGGACGAGGGATTTTACATGGAGGCCGACATCGCC
AGAGATCGTTACCTGGGGTTCGACTTTGAAGGCCTGAAGCTGGCAGCCGC
CGAGGGGTGGGCGCCCGACTTCGACCCGTACTATCGCATCGATGACCCCT
ACTTCATGCTCTTCAGCTCCCTCTGCTACCGAAAAGCGGCTGCCTTGTAC
GGCAACCGGAAGCGGGAAGGGGGCGGCGGCGGCGGCAACGGCAGCTACGG
AGGTGGTTACGCGGCCGCCCTCGGCGCGGGGCTGGCGGTGCTTGTGCTCT
CGCCGGCGGCGCGGCTCCGTGGCCTCGACTACTCATTCTTCCGCCTCCAG
GAATCGCTGACGGCGCAATGGTGGGGCGAGCGGGTCCGGCCGGCGACGCG
GCTGACGCAGCGCAACTTTCGGGCGATGGCCACCGCGGCTGAGCCCGGCA
TTTGCCTCTGCGAGCGGGAGACAGACTTCACAGAGATCATCACGCCGGGC
TACCAGCGGCCGCAGGACATTGAAGGTCTCGAGCGCGGCGCCTTTGCCTT
TTACAAGGTCGGCGCGGCGGCCGGCCCCGTCACCGTCATCTGCCTGCGGA
ACGACGGCCGCTGCGTTTCCCAGCCGGAGCCCGGAGGCCCGTTCTACTTC
TGCGGAGAGCGTGAGTGCGCGGAGGACCCCGATTCGTGCGGTCCGCCACC
GATTGTGGCCCTGGAGCCGCCGGTCGTTGTCCCCGTGCTCGCCGCATTCT
GCGCTGTGCCCGCGCGATCTGGGTTAGGCGGCGGCTCTGCCGATTCCGGC
GCGGCAGCGACGGCGGCGGTGGTGGCTGCGAGGGAAGTGGCCAGCGAAGC
CCTCGTCCGTGTGGCGGGAGGAAAAGCAGAAGCCGCAGGAGGCCAGCCGC
AACCCGCCGCAGCGGCGACCTTGGCAGCCAGAGGACTGCCGCCGAGCTTT
TGGTTGTCGTTGCATGGCCTGCGGTTTACGGAAGGCGGCGAGGGCGCGAG
CAATGTGGTGGCGGCCGTTTATTTGGACACCGCCGGAGCGACGAGGGAGC
TGGCAATTGGCGCGGCAGATGTGGAGAGACCAGACGCTGCAACAGTGCTC
CGGCAGAGGGCCGCGGTTTCCTGA
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