mRNA_P-wetherbeei_contig1661.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1661.3.1
Unique NamemRNA_P-wetherbeei_contig1661.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1661.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1661contigP-wetherbeei_contig1661:4974..6423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size733
Hectar predicted targeting categoryother localisation
Exons3
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.9463894-CDS-P-wetherbeei_contig1661:4973..51501683186091.9463894-CDS-P-wetherbeei_contig1661:4973..5150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 4974..5150 -
1683186091.9563234-CDS-P-wetherbeei_contig1661:5745..58541683186091.9563234-CDS-P-wetherbeei_contig1661:5745..5854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 5746..5854 -
1683186091.965839-CDS-P-wetherbeei_contig1661:5978..61301683186091.965839-CDS-P-wetherbeei_contig1661:5978..6130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 5979..6130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.9757936-UTR-P-wetherbeei_contig1661:6130..64231683186091.9757936-UTR-P-wetherbeei_contig1661:6130..6423Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1661 6131..6423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1661.3.1prot_P-wetherbeei_contig1661.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1661 4974..6130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1661.3.1

>prot_P-wetherbeei_contig1661.3.1 ID=prot_P-wetherbeei_contig1661.3.1|Name=mRNA_P-wetherbeei_contig1661.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MSLLSDLWFEALETEDYVAPYLAHMENIMTDKEALNDPAAAEDFQKIQIP
RAMESLMERYDAPILDHPAVGAFMQHIVEYYLYIVEQRAPNIQALTDLLF
RFFTASDMEFYDAYGNETHDDYRFANVAAAPLGLYRRNKRARSAAA
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mRNA from alignment at P-wetherbeei_contig1661:4974..6423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1661.3.1 ID=mRNA_P-wetherbeei_contig1661.3.1|Name=mRNA_P-wetherbeei_contig1661.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1450bp|location=Sequence derived from alignment at P-wetherbeei_contig1661:4974..6423- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGAAGGCTTCCGCCCAGGACAAGGAACGAGCAGAAAGAGTATGGGC
GTCCGGGTAGGAGGGAAAGAGTCAGACGAGAGGTCGGGCTGAATTCTTCA
AAAATTCTAAGAGAAAATCGCCAAAAACACTATTTATTGGGAGGGCTGCT
AGCAGAGAGAAAGAGGAAGCCTCGCAACGATTCTCCCATCCGATGGGGGA
TGGAGATCACCTTGCCTGTCCCAACCCTCAGCAGCAGCATTTTTCAAGAA
GTGCCGAGTGAAATTTGTCGCCCCATTGCGCCAATCACTCGCCATGAGCT
TGCTGAGCGATTTGTGGTTCGAGGCATTAGAGACGGAAGACTATGTGGCG
CCCTACTTGGCGCACATGGAGAACATCATGACGGACAAAGAGGCGCTCAA
CGACCCGGCGGCCGCTGAGGACTTTCAGAAGATCCAAATCCCACGGTGTG
TTGCTCGCAAGTGTCCCGCGTTCATCTTTTGCCCAAACACCATTACGTTT
GCGGCAGTCGTCCTCCTTTCGGCTGCTCACCATCTCTCCCGCGAACGGGT
TTCTGTCTTCTTTCCTCAGGGCCATGGAGTCCCTCATGGAGCGATACGAC
GCACCAATACTCGACCACCCGGCGGTCGGCGCCTTCATGCAGCACATCGT
CGAGTATTATCTGTACATTGTGGAACAGGTGGGCTCGTAGACACACATTC
TGGGTCCATCCGAAGTTTTCTTCCATTCAGCTTGCAGCACATGCTCGTCA
TGCAATGAAGCGGAAAGAAGCGGCGTCGCACCTCCCTTTCCAATCGCATG
TCAGCGCACCGGAAAAGGTTGCGTTGGAAGGGAAGAAAGTCGCTCGCCAG
TTCCATATGCATGCTGGAGGCTGTAAGGCGAATCTGCTGCCCAGAGGTCT
TTCTTTCCCCTCTGCCAGTGAGGTGACGCCGATCGGTTTGTCCGCCTGCC
GCTCCCTTCCTCGTGAATGCCTTCGAACGACTGATGTTCCGATTGACTCC
CAGTTGCCCCTTCTGATCTTTACTTCTTTTTGGTGCTTCCCCCGTCTGCC
GCAACTCGCGCCTTTCTCCTCCCCCTCCGGCCTCCTCGGGTCAATACCGG
CGATCGCCGCGGCGACAATGACGGCGGCGGTGGCGGCGGCGGCGGCTGTG
GTGGCGACGGCGGTCGCGGTGGCGACATTGCTGTTGTTGCATGGCCGGCT
CGGCGTGGCCTTTTGCGCTGCATGGTGATGATCCGACTCCCGTGCGGTTT
CAAATCGGTTCCCGACACGACAGCGCGCCCCCAACATCCAGGCGCTGACC
GACCTCCTGTTCCGGTTCTTCACCGCCTCTGACATGGAATTTTACGATGC
CTACGGGAACGAGACGCACGACGACTACCGCTTCGCTAACGTCGCGGCCG
CGCCCCTCGGCCTCTACCGCCGCAACAAGCGCGCCCGCAGCGCTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1661:4974..6423-

>mRNA_P-wetherbeei_contig1661.3.1 ID=mRNA_P-wetherbeei_contig1661.3.1|Name=mRNA_P-wetherbeei_contig1661.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1661:4974..6423- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTGCTGAGCGATTTGTGGTTCGAGGCATTAGAGACGGAAGACTA
TGTGGCGCCCTACTTGGCGCACATGGAGAACATCATGACGGACAAAGAGG
CGCTCAACGACCCGGCGGCCGCTGAGGACTTTCAGAAGATCCAAATCCCA
CGGGCCATGGAGTCCCTCATGGAGCGATACGACGCACCAATACTCGACCA
CCCGGCGGTCGGCGCCTTCATGCAGCACATCGTCGAGTATTATCTGTACA
TTGTGGAACAGCGCGCCCCCAACATCCAGGCGCTGACCGACCTCCTGTTC
CGGTTCTTCACCGCCTCTGACATGGAATTTTACGATGCCTACGGGAACGA
GACGCACGACGACTACCGCTTCGCTAACGTCGCGGCCGCGCCCCTCGGCC
TCTACCGCCGCAACAAGCGCGCCCGCAGCGCTGCCGCC
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