mRNA_P-wetherbeei_contig1649.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1649.3.1
Unique NamemRNA_P-wetherbeei_contig1649.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1649.3.1 vs. uniprot
Match: D7FL72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL72_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.620e-39
Identity = 70/143 (48.95%), Postives = 103/143 (72.03%), Query Frame = 3 
Query:  384 GIGVVDLKFATMKSGGLKVWLFFWLLGQGKAADNERPFFVRETSDGIRIFIEDTETPGATEYLGVLDCRWGQEPAPFLRIDRIDPAEAVPYEGELFLLDKLLNALLELGSSTDVKPEEKLFTFPE-DRNELSTAKGKIAALAA 809
            G GV+DL+F  +K+GG KV+L F+LLGQG+A DN+ PF VR+T +GIR+ I D ET   +++ GVLD  WG EP PF R+DRID  E +PY GEL++L+KLL+A++++     V+  +KLF F E ++N+L+  K  +A +A+
Sbjct:   27 GAGVIDLQFQNLKTGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGD-ETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMFREGEQNQLAETKAMLAGMAS 168
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BLAST of mRNA_P-wetherbeei_contig1649.3.1 vs. uniprot
Match: A0A835Z0B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 6.250e-39
Identity = 76/149 (51.01%), Postives = 103/149 (69.13%), Query Frame = 3 
Query:  369 EVKEGGIGVVDLKFATMKSGGLKVWLFFWLLGQGKAADNERPFFVRETSDGIRIFIEDTETPGAT-EYLGVLDCRWGQEPAPFLRIDRIDPAEAVPYEGELFLLDKLLNALLELGSSTDVKPEEKLFTFPEDRNELSTAKGKIAALAAK 812
            EV++ G  V+DL+FAT+K GG KVWLFFWLL +GK  D +  F VRET+DGIR F+   ++  +  EY GVLD  WG +PAPF R+DRIDP E  PY GEL +L ++++A+ EL         +KLFTF   R+++S AK K++ALA+K
Sbjct:   92 EVQKPGERVLDLRFATLKKGGFKVWLFFWLLAEGKG-DPKNQFTVRETADGIRCFLTGEQSGASVKEYNGVLDISWGTDPAPFFRVDRIDPNEEEPYPGELEVLCRIVDAMAELVQDDVTAGADKLFTFDTSRSDVSDAKAKLSALASK 239
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BLAST of mRNA_P-wetherbeei_contig1649.3.1 vs. uniprot
Match: A0A7S3YKT4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKT4_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 2.560e-12
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 3 
Query:  426 GGLKVWLFFWLLGQGKAADNERPFFVRETSDG-----IRIFIEDTETPGATEYLGVLDCRWGQEPAPFLRIDRIDPAEAVPYEGELFLLDKLLNALLELGSSTDVKPEEKLFTFPEDR 764
            GGLKVW+  + L  GK +D + PF V + S+      +R+ I + + P     +GVLD  + +     +R+ R + +   PY GEL+ +  LL A+LEL SS DVK   +LFT PE++
Sbjct:    1 GGLKVWMSLYFLSAGKRSDLQYPFQVTDISEAKGCPALRLVISENDDP-----IGVLDVTFSENG---IRVTRYEDSRTTPYPGELYAMYYLLEAMLELKSSKDVKEGGQLFTDPENK 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1649.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FL72_ECTSI1.620e-3948.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0B5_9STRA6.250e-3951.01Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3YKT4_HETAK2.560e-1237.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1649contigP-wetherbeei_contig1649:3400..5429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1196
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005260.1
Cds size699
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1649.3.1prot_P-wetherbeei_contig1649.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1649 3522..5054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.4753878-UTR-P-wetherbeei_contig1649:3399..35211683186088.4753878-UTR-P-wetherbeei_contig1649:3399..3521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1649 3400..3521 +
1683186088.5339289-UTR-P-wetherbeei_contig1649:5054..54291683186088.5339289-UTR-P-wetherbeei_contig1649:5054..5429Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1649 5055..5429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.4861627-CDS-P-wetherbeei_contig1649:3521..37431683186088.4861627-CDS-P-wetherbeei_contig1649:3521..3743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1649 3522..3743 +
1683186088.4955137-CDS-P-wetherbeei_contig1649:3950..40431683186088.4955137-CDS-P-wetherbeei_contig1649:3950..4043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1649 3951..4043 +
1683186088.5051851-CDS-P-wetherbeei_contig1649:4139..42751683186088.5051851-CDS-P-wetherbeei_contig1649:4139..4275Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1649 4140..4275 +
1683186088.5147269-CDS-P-wetherbeei_contig1649:4463..45501683186088.5147269-CDS-P-wetherbeei_contig1649:4463..4550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1649 4464..4550 +
1683186088.5242815-CDS-P-wetherbeei_contig1649:4893..50541683186088.5242815-CDS-P-wetherbeei_contig1649:4893..5054Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1649 4894..5054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1649.3.1

>prot_P-wetherbeei_contig1649.3.1 ID=prot_P-wetherbeei_contig1649.3.1|Name=mRNA_P-wetherbeei_contig1649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MSMALMSWFAAMLLLCGRGTNAFVVVAPPQLSSRALKTESSKRTSCDAMV
WRACSRQRHVLQQSQGGWFENLFKQKEESNKPEVKEGGIGVVDLKFATMK
SGGLKVWLFFWLLGQGKAADNERPFFVRETSDGIRIFIEDTETPGATEYL
GVLDCRWGQEPAPFLRIDRIDPAEAVPYEGELFLLDKLLNALLELGSSTD
VKPEEKLFTFPEDRNELSTAKGKIAALAAKYS*
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mRNA from alignment at P-wetherbeei_contig1649:3400..5429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1649.3.1 ID=mRNA_P-wetherbeei_contig1649.3.1|Name=mRNA_P-wetherbeei_contig1649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2030bp|location=Sequence derived from alignment at P-wetherbeei_contig1649:3400..5429+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTTGTTTACTTCAACCCGTATCTAGCGCCTGCTCGAAAAAATCCGCGT
GCGCCGGGCGTGGAAAGAACATTTGTGGTTTGTGAGCAGCAAAGCTTTAC
AAACGGAGCAATAGGTATCGCGATGTCGATGGCCCTGATGTCCTGGTTCG
CCGCCATGCTCTTGCTTTGCGGAAGAGGAACGAATGCGTTTGTTGTCGTG
GCTCCACCTCAGTTATCCTCGAGAGCTTTAAAGACGGAGTCGTCGAAACG
AACCTCTTGCGATGCCATGGTTTGGAGAGCTTGTTCTCGGCAACGGCACG
TCTTGCAGCAATCTCAAGGAGGGTGGTTTGAGAACTTGTTCAAGGTGGGT
GAGATGACCTCGCGACAACTTTCTTTCTCTTCTTTCCTCAAGGCTGTCAA
AGGCTTTCTCCCTTCCTTCGACTCTCCTTCAGTACATGTTGTTGGGTTGT
ACGCAGAAGGAGTTCTTGTCGCAAGCGTGCCGCAGTAGGTTTCAACACCT
CTTTTCCAATGCTCGCCCACTCCGCGTCGCTCGTTTGCGCGAAACAAACA
GCAGAAAGAGGAAAGCAACAAGCCTGAAGTCAAGGAGGGAGGAATTGGGG
TAGTGGACTTGAAGTTCGCCACGATGAAGTCTGGAGGTTTGAAGGTGAGC
TTCCCCCCTTACCTCCCCTCCTTTGGTCAGTGGAAGGGCTTAAATGACGG
TTGTTGCCAAACTTTTCCTTACTTGCTCTTCCATCTGCAGGTGTGGCTCT
TCTTTTGGTTGTTAGGCCAAGGGAAGGCTGCGGACAACGAGCGGCCGTTT
TTCGTGCGCGAGACTTCGGACGGGATCCGGATATTCATTGAAGACACTGA
GACGCCCGGCGCAACTGAGTACCTGGGTCAGTGGCAGTTTTGACGTACGA
TTTCTTTTGTTCTTCTGCTCTCTCTCATTTCGTTGAGAAGCGTGGCTGAC
CGGTCTACCCTTCGAGGTTGTTTGGTGGGCTCCGCATGCTTTCGCTTGAT
GCGCACAGCCGAAATCCGAACGCTATCCCTTCGTCTTTCTGTCTTTTTTC
GTTTCTCATTTCAGGGGTCCTTGACTGCAGATGGGGTCAGGAACCGGCGC
CTTTCCTGCGCATCGACCGCATTGACCCAGCAGAAGCGGTTCCCTACGAA
GGTTCGTGGAGGGTAATGGTGGTTTTGTTTTTCGGCGCCCCAGCCATTTG
TTAATGTCGGATTCGGAGGCCAAGACTGAAGGTTTTCGACTTACGCTGCC
ACGTCTAGAAAAAAGTGGGGCTCCAGTGCGCTTTTTCCGGTCCCAGATGA
TTCATTAGAAGAGACCACCATTGTCTCTTTCTGAGCCGCGCGGTTTTACT
CCATTCTCAATCCCGCCGTTGTTCCGACTTCTCTCGAGTTTGAACGCTGC
CGCAGCATGTGCGCAGCCGTAGTAAGCTTTGCCCCTTTTCCCTAAAGCTG
CTTTCAATTCTTTCTCCGTCTTTCCGTCCATCTGATCTGCTCAGGGGAGC
TGTTCCTGCTGGACAAGCTGCTGAACGCGCTGCTGGAGCTCGGCAGCAGC
ACGGATGTCAAGCCCGAAGAGAAACTCTTCACCTTTCCGGAGGACAGGAA
TGAGCTGTCCACCGCCAAAGGCAAAATCGCTGCTCTCGCCGCCAAGTACA
GTTAATCTAGCCTGGACTGGGGGTGGCAGGAACGGCGAACTGGCGGTGGA
AACGGTGGCAGCAATGGGGGCAGCGATCGTGATGGTGGTGGCGGTGGCGG
TGCCAGGCGACTTGGCAGGGGGAATAGGTAATAAGTAGTCGACGAGTGTT
GCGGCGGCGGTGAGGACAGTGGCGGCAGCGGTAGCGATGATGGTGGCAGC
AGCCTCAAAGGATTGCGGCGATTAGCGGCGGCTGTTTGCTGTGATGGTTG
AGGGCGGAAAGAGTGTAACCAGGTCAGAATCGAGCCGATTGGCTTTCTAG
AACACATCCTTTGAAGGGAAAATTGGAGTTTCCGGAATCCAACTATGACA
CACGATGCAAAATACAATCCTCATACCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1649:3400..5429+

>mRNA_P-wetherbeei_contig1649.3.1 ID=mRNA_P-wetherbeei_contig1649.3.1|Name=mRNA_P-wetherbeei_contig1649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig1649:3400..5429+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATGGCCCTGATGTCCTGGTTCGCCGCCATGCTCTTGCTTTGCGG
AAGAGGAACGAATGCGTTTGTTGTCGTGGCTCCACCTCAGTTATCCTCGA
GAGCTTTAAAGACGGAGTCGTCGAAACGAACCTCTTGCGATGCCATGGTT
TGGAGAGCTTGTTCTCGGCAACGGCACGTCTTGCAGCAATCTCAAGGAGG
GTGGTTTGAGAACTTGTTCAAGCAGAAAGAGGAAAGCAACAAGCCTGAAG
TCAAGGAGGGAGGAATTGGGGTAGTGGACTTGAAGTTCGCCACGATGAAG
TCTGGAGGTTTGAAGGTGTGGCTCTTCTTTTGGTTGTTAGGCCAAGGGAA
GGCTGCGGACAACGAGCGGCCGTTTTTCGTGCGCGAGACTTCGGACGGGA
TCCGGATATTCATTGAAGACACTGAGACGCCCGGCGCAACTGAGTACCTG
GGGGTCCTTGACTGCAGATGGGGTCAGGAACCGGCGCCTTTCCTGCGCAT
CGACCGCATTGACCCAGCAGAAGCGGTTCCCTACGAAGGGGAGCTGTTCC
TGCTGGACAAGCTGCTGAACGCGCTGCTGGAGCTCGGCAGCAGCACGGAT
GTCAAGCCCGAAGAGAAACTCTTCACCTTTCCGGAGGACAGGAATGAGCT
GTCCACCGCCAAAGGCAAAATCGCTGCTCTCGCCGCCAAGTACAGTTAA
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