mRNA_P-wetherbeei_contig16446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16446.1.1
Unique NamemRNA_P-wetherbeei_contig16446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A346A2J3_9HYPH (Type-4 uracil-DNA glycosylase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A2J3_9HYPH)

HSP 1 Score: 338 bits (866), Expect = 4.140e-114
Identity = 178/279 (63.80%), Postives = 206/279 (73.84%), Query Frame = 1
Query:    1 MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGD--PMPPATVESAT--PSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            M+    K AR++L FY+EAGVD A+GE   D+ A +  P+ PA    A   P +APP                         D A M AR AAR+A+T++ELR IL+ FDGCALKATA++LVFADG P +RVMFVGEAPGRDEDIEGLPFVGRSGKLLD+MLAAIGLDR  VYIANIVPWRPPGNRTPTP E+QICLPF+ RQIEL  PD++V +G PS QTLL   +GIT+TRGRWF F +G R+IR +PTFHPAFLLRSPLQKRF WRDFLAIKKAL
Sbjct:    1 MVSADIKPARELLDFYLEAGVDAALGEEAVDHFAEETPPLQPARTAPAISEPRIAPPA----------------APFVPPAPDAAAMEARVAARSAQTLEELRDILQRFDGCALKATATKLVFADGTPGSRVMFVGEAPGRDEDIEGLPFVGRSGKLLDRMLAAIGLDRRHVYIANIVPWRPPGNRTPTPQESQICLPFVTRQIELADPDILVCLGGPSAQTLLGLKEGITKTRGRWFTFDTGKREIRAIPTFHPAFLLRSPLQKRFAWRDFLAIKKAL 263          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A0R3CVP1_9BRAD (Type-4 uracil-DNA glycosylase n=84 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0R3CVP1_9BRAD)

HSP 1 Score: 335 bits (858), Expect = 7.820e-113
Identity = 173/276 (62.68%), Postives = 204/276 (73.91%), Query Frame = 1
Query:    1 MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMPPATVESATPSVAP-PTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            MIP+ A   R++LAFY+EAGVD A+ E P D LA    PP +  +A P+ AP P   PA                    D A+ +AREAAR A T++ LR ++++F+GCALK TA+RLVFADGNP+AR+MFVGEAPGRDEDIEGLPFVGRSGKLLD ML AIGL+RT  YIAN++PWRPPGNRTPTP ETQICLPF+ RQIEL  PDV+VT+GNPSTQTLL T +GI RTRGRWF + +G R IR LPTFHPA+LLRSP  KR  W+D  AI KAL
Sbjct:    1 MIPEPAPTVRELLAFYLEAGVDCALAEEPIDRLAEIDAPPPSPRAAPPAEAPRPVAAPAVMRGEAAP----------APDVAIASAREAARTAPTLEALRELMQNFEGCALKHTATRLVFADGNPQARIMFVGEAPGRDEDIEGLPFVGRSGKLLDLMLGAIGLNRTTAYIANVIPWRPPGNRTPTPQETQICLPFIQRQIELVNPDVLVTLGNPSTQTLLSTREGIMRTRGRWFDYDTGQRVIRALPTFHPAYLLRSPAYKRLAWQDLRAIAKAL 266          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A0Q7TYS7_9HYPH (Type-4 uracil-DNA glycosylase n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TYS7_9HYPH)

HSP 1 Score: 334 bits (857), Expect = 1.040e-112
Identity = 178/273 (65.20%), Postives = 199/273 (72.89%), Query Frame = 1
Query:   25 ARDILAFYVEAGVDTAIGEAPNDYLAGDPMPPATVESATPSVAP------PTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            ARD+L FY+ AGVD  +GE P D  A    PP     A+   AP       TP PA                    D A MAAR AAR+A +++ELRAILESFDGCALKATA+R VFADGNP+ARVM VGEAPGRDEDIEGLPFVGRSGKLLD+ML AIGLDRT VYIANIVPWRPPGNRTPTP E+ ICLPF+LRQIEL  PD++V +G PS QTLL   DGIT+TRGRWF F +  R+IR + TFHPAFLLRSPLQKRF WRD LAI+KAL
Sbjct:    9 ARDLLEFYLAAGVDALVGEEPVDRFAVVEAPPVAPRQASERPAPVVTARPATPIPAVV----------------APDEAAMAARTAARSAASLEELRAILESFDGCALKATATRTVFADGNPQARVMLVGEAPGRDEDIEGLPFVGRSGKLLDQMLKAIGLDRTSVYIANIVPWRPPGNRTPTPQESAICLPFVLRQIELADPDILVCLGGPSAQTLLNIKDGITKTRGRWFTFDTDKREIRAIATFHPAFLLRSPLQKRFAWRDLLAIRKAL 265          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A537SNN5_9PROT (Type-4 uracil-DNA glycosylase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SNN5_9PROT)

HSP 1 Score: 333 bits (854), Expect = 4.030e-112
Identity = 168/273 (61.54%), Postives = 205/273 (75.09%), Query Frame = 1
Query:    7 PDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMPPATVESATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            P+ A   + +LAFY+EAGVD A+ E P D L+   +    + +A+    PPT  PA                  G + A+++AREAAR A T+D LRA+LE+FDGCALKATA+RLVFADGNP+AR+MFVGEAPGR+ED+EGLPFVGRSGKLLD+M+AAIGLDRT  YIAN++PWRPPGNRTPTP ETQICLPF+ RQIEL  PDV+VT+GNPSTQTLL+T +GI +TRGRWF + +G R IR + TFHPA+LLRSP  KR  W+D  AI KAL
Sbjct:    9 PENAPTVQQLLAFYLEAGVDCALAEEPIDRLSDSEL----ISAASRPAQPPTARPAGAIPVARTEAGP------GTEAAILSAREAARTAPTLDALRALLENFDGCALKATATRLVFADGNPQARIMFVGEAPGREEDLEGLPFVGRSGKLLDRMIAAIGLDRTSAYIANVIPWRPPGNRTPTPQETQICLPFIQRQIELVNPDVLVTLGNPSTQTLLETREGIMKTRGRWFEYNTGTRVIRAIATFHPAYLLRSPGYKRMAWQDLRAIAKAL 271          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A537L439_9PROT (Type-4 uracil-DNA glycosylase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L439_9PROT)

HSP 1 Score: 332 bits (852), Expect = 8.690e-112
Identity = 178/293 (60.75%), Postives = 206/293 (70.31%), Query Frame = 1
Query:    1 MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLA---GDPMPPATVE---------------SATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            M PDRA+AARD+L FY EAGVD  + EAP D LA    D  P A V                SA P   PP   PA                    D AV+AAREAAR+A ++ ELR +LE F+GCAL+ TA +LVFADGNP++RVMFVGEAPGR+ED+EGLPFVGRSGKLLD+M+AAIGLDRT  YIANI+PWRPPGNRTPTP E+QICLPF+ RQIEL  PD++V MGNP+TQTLL   DGI RTRGRWF F +G R+IR + TFHPA+LLRSPL KR  WRD LAI+ AL
Sbjct:    1 MTPDRARAARDLLDFYAEAGVDALVAEAPGDRLATAHADAAPAADVAPVPQRQPLAHVQLSVSAAPLARPPV-APAP-------------------DVAVIAAREAARSAASLGELRTMLEKFEGCALRTTAKQLVFADGNPQSRVMFVGEAPGREEDLEGLPFVGRSGKLLDQMIAAIGLDRTSAYIANIIPWRPPGNRTPTPQESQICLPFIQRQIELVNPDILVCMGNPATQTLLGVKDGIKRTRGRWFNFHTGTREIRAIATFHPAYLLRSPLDKRLAWRDLLAIRTAL 273          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A1Q7BHE5_9PROT (Type-4 uracil-DNA glycosylase n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BHE5_9PROT)

HSP 1 Score: 332 bits (852), Expect = 9.970e-112
Identity = 172/278 (61.87%), Postives = 203/278 (73.02%), Query Frame = 1
Query:   10 DRAKAARDILAFYVEAGVDTAIGEAPNDYLAGD-----PMPPATVESATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKALG 828
            DR  AAR++LAFY EAGVD  + E P D  A D     P P A    A    +     P                     +TAVMAAREAA++A +++ELRA+LE F+GCAL+ TA++LVFADGNP+ARVMFVGEAPGRDEDIEGLPFVGRSGKLLD+M+AAIGLDRT  YIANIVPWRPPGNRTPTP E+ ICLPF+LRQIEL  PD+++ +GNPSTQTLL + +GI +TRGRWF F +G R+IR + T HPA+LLR PLQKR  WRDFLAIKKAL 
Sbjct:    5 DREGAARELLAFYREAGVDALLEETPTDRFATDRPSAVPAPRAEAARAKGEASSARAAPTRERELPGRVAAAAAVAV-SPETAVMAAREAAKSAASLEELRALLERFEGCALRTTATQLVFADGNPQARVMFVGEAPGRDEDIEGLPFVGRSGKLLDRMMAAIGLDRTSAYIANIVPWRPPGNRTPTPQESAICLPFMLRQIELADPDILICLGNPSTQTLLNSKEGILKTRGRWFSFHTGTREIRAMATLHPAYLLRQPLQKRLAWRDFLAIKKALA 281          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: UPI001BD6603F (uracil-DNA glycosylase n=1 Tax=Bradyrhizobium sp. dw_78 TaxID=2719793 RepID=UPI001BD6603F)

HSP 1 Score: 332 bits (850), Expect = 1.580e-111
Identity = 176/276 (63.77%), Postives = 205/276 (74.28%), Query Frame = 1
Query:    1 MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMP-PATVESATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            M P+ A   R +LAFY+EAGVD A+ E P D LA DP P PA   +A+P       GP               XXXX  D A+++AREAAR A T++ LRA+LE FDGCALK TA+RLVF DGNP+AR+MFVGEAPGRDEDIEGLPFVGRSGKLLD+M+ AIGLDR+  YIAN++PWRPPGNRTPTP ETQICLPF+ RQIEL  PDV+VT+GNPSTQTLL   +GI RTRGRWF + +G R IR LPTFHPA+LLRSP  KR  W+D  +I KAL
Sbjct:    1 MTPEPAPTVRQLLAFYLEAGVDCALAEEPLDRLA-DPAPVPAAGATASP-------GPVRTVPAAAAIPAPRAXXXXXXDAAIVSAREAARTAPTLEALRALLEKFDGCALKHTATRLVFGDGNPQARIMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIGAIGLDRSSAYIANVIPWRPPGNRTPTPQETQICLPFIRRQIELVNPDVLVTLGNPSTQTLLSIREGIMRTRGRWFDYDTGTRTIRALPTFHPAYLLRSPSYKRMSWQDLRSIAKAL 268          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A0R3N9P8_9BRAD (Type-4 uracil-DNA glycosylase n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3N9P8_9BRAD)

HSP 1 Score: 329 bits (844), Expect = 1.290e-110
Identity = 173/278 (62.23%), Postives = 203/278 (73.02%), Query Frame = 1
Query:    4 IPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMP-PATV--ESATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKALG 828
            IP+ A   R +LAFY+EAGVD A+ E P D LA    P PA V  ESA P        P                     + A+ +AREAAR+A T+DELRA+LE F+GCAL+ TA+RLVFADGNP+AR+MFVGEAPGRDEDIEGLPFVGRSGKLLD+M+AAIGLDR+K YIAN++PWRPPGNRTPTP ETQICLPF+ RQIEL  PDV+VT+GNPSTQTLL T +GI RTRG+WF + +G R IR + TFHPA+LLRSP  KR  W+D  AI KAL 
Sbjct:    4 IPEPAPNLRQLLAFYLEAGVDCALAEEPVDRLAEPDAPAPALVPRESAPP--------PPVREMPAAMPAVPRSEIAPAPEVAIASAREAARSAPTLDELRALLEKFEGCALRNTATRLVFADGNPKARIMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRSKAYIANVIPWRPPGNRTPTPQETQICLPFIQRQIELVNPDVLVTLGNPSTQTLLSTREGIMRTRGKWFDYDTGTRTIRAMATFHPAYLLRSPSYKRMSWQDLRAIAKALA 273          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: A0A1M7T7N9_9BRAD (Type-4 uracil-DNA glycosylase n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M7T7N9_9BRAD)

HSP 1 Score: 329 bits (844), Expect = 1.380e-110
Identity = 171/276 (61.96%), Postives = 205/276 (74.28%), Query Frame = 1
Query:    1 MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMPPATVESATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGA-DTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            M P+ A     +LAFY+EAGVD A+ + P D LA    PPA +++ TPS      GPA                   A D A+ +AREAAR A +++ LR +LE FDGCALK+TA+RLVFADGNP+AR+MFVGEAPGRDEDIEGLPFVGRSGKLLD+M+AAIGLDRTKVYIAN++PWRPPGNRTPTP ETQICLPF+ RQIEL  PD++VT+GNPSTQTLL T +GI +TRGRWF + +G R IR + TFHPA+LLRSP  KR  W+D  +I KAL
Sbjct:    1 MTPEPAPTVSQLLAFYLEAGVDCALSDEPVDRLAEPEAPPA-IKATTPSS---DAGPARPARAATTTFAAPTADPSPAPDAAIASAREAARTAASLEVLRDMLEKFDGCALKSTATRLVFADGNPKARIMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRTKVYIANVIPWRPPGNRTPTPQETQICLPFIQRQIELVDPDILVTLGNPSTQTLLSTREGIMKTRGRWFNYDTGTRTIRAIATFHPAYLLRSPSYKRLSWQDLRSIAKAL 272          
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Match: UPI00040A1DF4 (uracil-DNA glycosylase n=1 Tax=Bradyrhizobium sp. Tv2a-2 TaxID=113395 RepID=UPI00040A1DF4)

HSP 1 Score: 329 bits (843), Expect = 1.540e-110
Identity = 168/275 (61.09%), Postives = 199/275 (72.36%), Query Frame = 1
Query:    1 MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMPPATVESATPSVAPPTPGPAXXXXXXXXXXXXXXXXXXGADTAVMAAREAARNAKTMDELRAILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRSGKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQIELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFHPAFLLRSPLQKRFVWRDFLAIKKAL 825
            M P+ A + R++LAFY+EAGVD A+   P + LA   + P   +      A P P P                     D A+ +AREAAR A T+ +LR ++E FDGC+LKATA+RLVF+DGNP AR+MFVGEAPGRDEDIEGLPFVGRSGKLLD+M+ AIGLDRTK YIAN++PWRPPGNRTPTP ETQICLPF+ RQIEL  PDV+VT+GNPSTQTLL T +GI RTRGRWF + +G R IR LPTFHPA+LLRSP  KR  W+D LAI K L
Sbjct:    1 MTPEPALSVRELLAFYLEAGVDCALANEPINRLAEPDIAPKRADVVPVQPARPAPVPLILPPGETPA---------APDAAIASAREAARTAPTLTDLRQLMERFDGCSLKATATRLVFSDGNPEARIMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIGAIGLDRTKAYIANVIPWRPPGNRTPTPQETQICLPFIQRQIELVDPDVLVTLGNPSTQTLLGTREGIMRTRGRWFDYHTGTRVIRALPTFHPAYLLRSPAYKRLAWQDLLAIAKVL 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A2J3_9HYPH4.140e-11463.80Type-4 uracil-DNA glycosylase n=1 Tax=Pseudolabrys... [more]
A0A0R3CVP1_9BRAD7.820e-11362.68Type-4 uracil-DNA glycosylase n=84 Tax=Bradyrhizob... [more]
A0A0Q7TYS7_9HYPH1.040e-11265.20Type-4 uracil-DNA glycosylase n=1 Tax=Pseudolabrys... [more]
A0A537SNN5_9PROT4.030e-11261.54Type-4 uracil-DNA glycosylase n=2 Tax=Alphaproteob... [more]
A0A537L439_9PROT8.690e-11260.75Type-4 uracil-DNA glycosylase n=1 Tax=Alphaproteob... [more]
A0A1Q7BHE5_9PROT9.970e-11261.87Type-4 uracil-DNA glycosylase n=2 Tax=unclassified... [more]
UPI001BD6603F1.580e-11163.77uracil-DNA glycosylase n=1 Tax=Bradyrhizobium sp. ... [more]
A0A0R3N9P8_9BRAD1.290e-11062.23Type-4 uracil-DNA glycosylase n=4 Tax=Bradyrhizobi... [more]
A0A1M7T7N9_9BRAD1.380e-11061.96Type-4 uracil-DNA glycosylase n=1 Tax=Bradyrhizobi... [more]
UPI00040A1DF41.540e-11061.09uracil-DNA glycosylase n=1 Tax=Bradyrhizobium sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16446contigP-wetherbeei_contig16446:643..1473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog335659.S23_54610
Preferred nameudgA
PFAMsUDG
Model size831
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K21929
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.82e-113
EggNOG OGsCOG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,2TT4Q@28211|Alphaproteobacteria,3JU3F@41294|Bradyrhizobiaceae
EC3.2.2.27
DescriptionUreE urease accessory protein, C-terminal domain
Cds size831
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.4086409-CDS-P-wetherbeei_contig16446:642..14731683186087.4086409-CDS-P-wetherbeei_contig16446:642..1473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16446 643..1473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16446.1.1prot_P-wetherbeei_contig16446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16446 643..1473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16446.1.1

>prot_P-wetherbeei_contig16446.1.1 ID=prot_P-wetherbeei_contig16446.1.1|Name=mRNA_P-wetherbeei_contig16446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp
MIPDRAKAARDILAFYVEAGVDTAIGEAPNDYLAGDPMPPATVESATPSV
APPTPGPARRPSPSAPPPMPAQTAPPGADTAVMAAREAARNAKTMDELRA
ILESFDGCALKATASRLVFADGNPRARVMFVGEAPGRDEDIEGLPFVGRS
GKLLDKMLAAIGLDRTKVYIANIVPWRPPGNRTPTPVETQICLPFLLRQI
ELCAPDVVVTMGNPSTQTLLQTSDGITRTRGRWFPFKSGDRDIRVLPTFH
PAFLLRSPLQKRFVWRDFLAIKKALG*
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mRNA from alignment at P-wetherbeei_contig16446:643..1473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16446.1.1 ID=mRNA_P-wetherbeei_contig16446.1.1|Name=mRNA_P-wetherbeei_contig16446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig16446:643..1473- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCCCGACCGCGCCAAGGCCGCCCGCGATATCCTCGCTTTCTACGT CGAGGCAGGCGTGGACACGGCCATCGGCGAGGCGCCGAACGACTATCTGG CGGGCGATCCGATGCCGCCCGCGACGGTGGAAAGTGCCACGCCGAGTGTC GCCCCGCCCACGCCGGGACCAGCCCGCCGACCATCCCCCTCCGCTCCCCC GCCGATGCCGGCACAAACCGCGCCGCCCGGTGCTGACACCGCGGTGATGG CGGCGCGCGAGGCCGCGCGCAACGCCAAGACGATGGATGAACTGCGCGCG ATCCTTGAATCTTTCGACGGCTGCGCGCTGAAGGCGACCGCCTCGCGCCT CGTGTTCGCCGACGGCAATCCGCGCGCGCGCGTCATGTTCGTCGGCGAAG CGCCCGGCCGCGACGAGGACATCGAGGGGCTGCCGTTCGTCGGCCGCTCC GGCAAGCTGCTCGACAAGATGCTGGCGGCGATCGGACTCGACCGCACCAA GGTCTACATCGCCAACATCGTGCCGTGGCGGCCACCCGGCAACCGCACGC CGACGCCGGTCGAGACACAGATTTGCCTACCGTTCCTCTTGCGCCAGATC GAGTTGTGTGCGCCCGACGTCGTGGTGACGATGGGCAATCCTTCGACGCA GACGCTGTTGCAGACGTCCGACGGCATCACTCGCACGCGCGGGCGCTGGT TCCCGTTCAAGAGCGGCGACCGCGACATCCGCGTCCTGCCGACATTCCAC CCCGCGTTTCTGCTTCGAAGTCCGCTGCAAAAGCGGTTCGTTTGGCGCGA TTTCCTCGCGATCAAGAAGGCGTTGGGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16446:643..1473-

>mRNA_P-wetherbeei_contig16446.1.1 ID=mRNA_P-wetherbeei_contig16446.1.1|Name=mRNA_P-wetherbeei_contig16446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig16446:643..1473- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCCCGACCGCGCCAAGGCCGCCCGCGATATCCTCGCTTTCTACGT
CGAGGCAGGCGTGGACACGGCCATCGGCGAGGCGCCGAACGACTATCTGG
CGGGCGATCCGATGCCGCCCGCGACGGTGGAAAGTGCCACGCCGAGTGTC
GCCCCGCCCACGCCGGGACCAGCCCGCCGACCATCCCCCTCCGCTCCCCC
GCCGATGCCGGCACAAACCGCGCCGCCCGGTGCTGACACCGCGGTGATGG
CGGCGCGCGAGGCCGCGCGCAACGCCAAGACGATGGATGAACTGCGCGCG
ATCCTTGAATCTTTCGACGGCTGCGCGCTGAAGGCGACCGCCTCGCGCCT
CGTGTTCGCCGACGGCAATCCGCGCGCGCGCGTCATGTTCGTCGGCGAAG
CGCCCGGCCGCGACGAGGACATCGAGGGGCTGCCGTTCGTCGGCCGCTCC
GGCAAGCTGCTCGACAAGATGCTGGCGGCGATCGGACTCGACCGCACCAA
GGTCTACATCGCCAACATCGTGCCGTGGCGGCCACCCGGCAACCGCACGC
CGACGCCGGTCGAGACACAGATTTGCCTACCGTTCCTCTTGCGCCAGATC
GAGTTGTGTGCGCCCGACGTCGTGGTGACGATGGGCAATCCTTCGACGCA
GACGCTGTTGCAGACGTCCGACGGCATCACTCGCACGCGCGGGCGCTGGT
TCCCGTTCAAGAGCGGCGACCGCGACATCCGCGTCCTGCCGACATTCCAC
CCCGCGTTTCTGCTTCGAAGTCCGCTGCAAAAGCGGTTCGTTTGGCGCGA
TTTCCTCGCGATCAAGAAGGCGTTGGGTTAA
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