mRNA_P-wetherbeei_contig16434.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16434.1.1
Unique NamemRNA_P-wetherbeei_contig16434.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16434.1.1 vs. uniprot
Match: A0A7C5F845_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7C5F845_9EURY)

HSP 1 Score: 64.3 bits (155), Expect = 6.000e-9
Identity = 42/137 (30.66%), Postives = 65/137 (47.45%), Query Frame = 1 
Query:   19 IATRRVAPSPYWFGAVCFEAQAPVSEWAHWEPILLGIQESWRIEPSWMERQKAAHASVNYTNVIQQDMAQRYADISRTLSETGDIITSGYWNRQPVSTPAPTYDWSHNWSQMMRGRDDRTDDSGNRYDVPGGYDRYW 429
            + T  +     W G +    +A   ++     ILLGI  S++I PSW+E +    AS    N +  +  + + DISRTLSET +IIT GY  R          D + +   +  G +D  ++ G  + V  GY+ YW
Sbjct:  348 LPTHMLYAGQKWLGIIGPSCRASEEKFEDMLHILLGIASSFKINPSWLESEN--RASQARLNALMHERQRIFQDISRTLSETSEIITRGYEARSQTMD-----DITRHAGNVAGGWEDIRNEYGETWKVASGYNSYW 477
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BLAST of mRNA_P-wetherbeei_contig16434.1.1 vs. uniprot
Match: A0A373S9R2_9FIRM (Uncharacterized protein n=1 Tax=Blautia sp. AF26-2 TaxID=2292966 RepID=A0A373S9R2_9FIRM)

HSP 1 Score: 56.6 bits (135), Expect = 2.550e-6
Identity = 34/114 (29.82%), Postives = 53/114 (46.49%), Query Frame = 1 
Query:  163 ERQKAAHASVNYTNVIQQDMAQRYADISRTLSETGDIITSGYWNRQPVSTPAPTYDWSHNWSQMMRGRDDRTDDSGNRYDVPGGYDRYWVDTNNTTVFAGDWKVTPDPSWRELR 504
            E ++     +N     QQ+  +    ISRTLSET DI+   YW+R           W  N S+ +RG +  TD +G +Y+    YD  +   ++T   + +  V   P W EL+
Sbjct:  289 ELRRTEQVQINGAMQRQQNAIRSSQQISRTLSETSDIVNQAYWDRSERMDRV----WEKN-SEAVRGVNSYTDSTGRQYEADVAYDHVYRHGDDTFAGSKNGSVDLGPEWEELK 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16434.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C5F845_9EURY6.000e-930.66Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A373S9R2_9FIRM2.550e-629.82Uncharacterized protein n=1 Tax=Blautia sp. AF26-2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16434contigP-wetherbeei_contig16434:96..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.003808-CDS-P-wetherbeei_contig16434:95..6021683186087.003808-CDS-P-wetherbeei_contig16434:95..602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16434 96..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16434.1.1prot_P-wetherbeei_contig16434.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16434 96..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16434.1.1

>prot_P-wetherbeei_contig16434.1.1 ID=prot_P-wetherbeei_contig16434.1.1|Name=mRNA_P-wetherbeei_contig16434.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MHRRSRIATRRVAPSPYWFGAVCFEAQAPVSEWAHWEPILLGIQESWRIE
PSWMERQKAAHASVNYTNVIQQDMAQRYADISRTLSETGDIITSGYWNRQ
PVSTPAPTYDWSHNWSQMMRGRDDRTDDSGNRYDVPGGYDRYWVDTNNTT
VFAGDWKVTPDPSWRELR*
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mRNA from alignment at P-wetherbeei_contig16434:96..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16434.1.1 ID=mRNA_P-wetherbeei_contig16434.1.1|Name=mRNA_P-wetherbeei_contig16434.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig16434:96..602- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACAGGCGATCCCGCATCGCGACTCGTCGCGTAGCGCCCAGCCCCTA
CTGGTTCGGAGCCGTGTGCTTCGAGGCCCAGGCCCCCGTCTCTGAGTGGG
CGCACTGGGAGCCCATCCTGCTCGGCATTCAGGAAAGCTGGCGCATCGAG
CCCTCCTGGATGGAGCGGCAGAAAGCCGCTCACGCTTCGGTCAACTACAC
CAACGTTATTCAGCAAGACATGGCGCAGCGCTACGCCGACATCTCCCGAA
CCCTCAGCGAAACCGGCGATATCATAACCAGCGGCTACTGGAATCGCCAG
CCCGTCTCCACCCCCGCCCCGACCTACGACTGGTCCCATAACTGGTCCCA
GATGATGCGCGGACGCGATGACCGCACCGACGACTCGGGTAATCGCTACG
ACGTCCCGGGCGGTTACGACCGCTACTGGGTCGACACCAACAACACCACA
GTCTTCGCCGGCGACTGGAAGGTCACGCCCGACCCCAGCTGGCGAGAGCT
TCGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16434:96..602-

>mRNA_P-wetherbeei_contig16434.1.1 ID=mRNA_P-wetherbeei_contig16434.1.1|Name=mRNA_P-wetherbeei_contig16434.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig16434:96..602- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACAGGCGATCCCGCATCGCGACTCGTCGCGTAGCGCCCAGCCCCTA
CTGGTTCGGAGCCGTGTGCTTCGAGGCCCAGGCCCCCGTCTCTGAGTGGG
CGCACTGGGAGCCCATCCTGCTCGGCATTCAGGAAAGCTGGCGCATCGAG
CCCTCCTGGATGGAGCGGCAGAAAGCCGCTCACGCTTCGGTCAACTACAC
CAACGTTATTCAGCAAGACATGGCGCAGCGCTACGCCGACATCTCCCGAA
CCCTCAGCGAAACCGGCGATATCATAACCAGCGGCTACTGGAATCGCCAG
CCCGTCTCCACCCCCGCCCCGACCTACGACTGGTCCCATAACTGGTCCCA
GATGATGCGCGGACGCGATGACCGCACCGACGACTCGGGTAATCGCTACG
ACGTCCCGGGCGGTTACGACCGCTACTGGGTCGACACCAACAACACCACA
GTCTTCGCCGGCGACTGGAAGGTCACGCCCGACCCCAGCTGGCGAGAGCT
TCGCTAA
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