mRNA_P-wetherbeei_contig16387.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16387.1.1
Unique NamemRNA_P-wetherbeei_contig16387.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: W7T7U7_9STRA (Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7U7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.840e-26
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            P AGG P    +  KINA +GSFD FK  F TAA  HFGSGWAWLV+K D  L++V+THDA+NP+  GLG PLL CDVWEH
Sbjct:   85 PNAGGAPSG-PIADKINAAFGSFDNFKSQFSTAAAGHFGSGWAWLVLK-DGKLEVVSTHDASNPLKEGLGTPLLTCDVWEH 163          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: A0A7C9KLY0_9BURK (Superoxide dismutase n=1 Tax=Burkholderiales bacterium LSUCC0115 TaxID=1778438 RepID=A0A7C9KLY0_9BURK)

HSP 1 Score: 97.4 bits (241), Expect = 1.810e-23
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            P AGG P  A L   INAKWGSFDAFK AF  +AV +FGSGW WLV K D +LDIV T +A  P+  G  +PL+ CDVWEH
Sbjct:   83 PNAGGAPTGA-LADAINAKWGSFDAFKDAFTKSAVGNFGSGWTWLVKKADGSLDIVNTSNAATPLT-GADKPLMTCDVWEH 161          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: A0A0G4GGW9_VITBC (Superoxide dismutase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GGW9_VITBC)

HSP 1 Score: 95.1 bits (235), Expect = 1.900e-22
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            P  GG+P  A +  KI+A +GSFDAFK  F TAA  HFGSGWAWLV   D  L IV  HDA NPM  G G+ +L CDVWEH
Sbjct:   92 PGGGGLPTGA-VKDKIDAAFGSFDAFKEQFSTAAAGHFGSGWAWLVAGDDGKLKIVGGHDAMNPMKDGSGKAILTCDVWEH 171          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: A0A5C7PN29_9BURK (Superoxide dismutase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7PN29_9BURK)

HSP 1 Score: 94.0 bits (232), Expect = 4.070e-22
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            P  GG P  A L A INAKWGSF AFK AF  +A+ +FGS W WLV K D TLDIV T +A  P+  G  +PLL CDVWEH
Sbjct:   83 PKGGGEPGGA-LAAAINAKWGSFAAFKDAFTKSAIGNFGSSWTWLVKKADGTLDIVNTSNAATPLT-GADKPLLTCDVWEH 161          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: A0A1Y2K534_9PROT (Superoxide dismutase n=1 Tax=Magnetofaba australis IT-1 TaxID=1434232 RepID=A0A1Y2K534_9PROT)

HSP 1 Score: 93.6 bits (231), Expect = 5.880e-22
Identity = 49/81 (60.49%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            P  GG P  A L   INAKWGSFDAFK AF   AV  FGSGWAWLV K D TLD+++T +A  P+  G  +PLL CDVWEH
Sbjct:   83 PHGGGAPGGA-LADAINAKWGSFDAFKEAFTKCAVTTFGSGWAWLVKKPDGTLDLLSTSNACCPLT-GDAKPLLTCDVWEH 161          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: D8LI17_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.260e-21
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 KAAGPAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            K+  P+ GG P  A   A I  K+GSF+AFK AF   A  HFGSGWAWLV      +D+V THDA+NP+  G G P+L CDVWEH
Sbjct:   80 KSLSPSGGGEPTGAVKEA-IEEKFGSFEAFKKAFSDTAAGHFGSGWAWLVKTESGGVDVVGTHDASNPVKEGKGTPILTCDVWEH 163          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: A0A7Y5PHZ7_9BURK (Superoxide dismutase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7Y5PHZ7_9BURK)

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-21
Identity = 49/81 (60.49%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            PA GG PK A L A I AKWGSF AFK AF  +AV +FGSGW WLV K D T+DIV T +A  P+     RPLL  DVWEH
Sbjct:   84 PAGGGEPKGA-LAAAIQAKWGSFAAFKEAFTKSAVGNFGSGWTWLVKKPDGTVDIVNTSNAATPLTTA-DRPLLTVDVWEH 162          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: A0A7S2V2G5_9STRA (Superoxide dismutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.730e-21
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   61 INAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            IN+ +GSF++FK  F  +A  HFGSGWAWL  K D +L+IV THDA+NP+  G G+P+L CDVWEH
Sbjct:   97 INSSFGSFESFKEKFSASAGGHFGSGWAWLCKKDDGSLEIVDTHDASNPLKEGKGKPILTCDVWEH 162          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: L1LGM5_THEEQ (Superoxide dismutase n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L1LGM5_THEEQ)

HSP 1 Score: 92.4 bits (228), Expect = 1.860e-21
Identity = 46/82 (56.10%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   13 GPAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            GP  GG P   T+   I  K+GSF  FK  F +    HFGSGW WLV+K D T DIV THDA +P+   LG+PLLVCDVWEH
Sbjct:   82 GPNCGGEPVG-TIRKLIEDKFGSFGKFKEDFSSLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPLRDNLGKPLLVCDVWEH 162          
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Match: O34029_BURPE (Superoxide dismutase (Fragment) n=1 Tax=Burkholderia pseudomallei TaxID=28450 RepID=O34029_BURPE)

HSP 1 Score: 90.5 bits (223), Expect = 2.290e-21
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 PAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWLVVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEH 258
            P  GG P  A L   INAKWGSFDAFK AF  AAV  FGSGWAWLV K D +LDIV+T +A  P+     +PL+  DVWEH
Sbjct:   56 PNGGGAPTGA-LGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTA-DKPLVTIDVWEH 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T7U7_9STRA7.840e-2662.96Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7C9KLY0_9BURK1.810e-2360.49Superoxide dismutase n=1 Tax=Burkholderiales bacte... [more]
A0A0G4GGW9_VITBC1.900e-2259.26Superoxide dismutase n=2 Tax=Vitrella brassicaform... [more]
A0A5C7PN29_9BURK4.070e-2259.26Superoxide dismutase n=1 Tax=Burkholderiaceae bact... [more]
A0A1Y2K534_9PROT5.880e-2260.49Superoxide dismutase n=1 Tax=Magnetofaba australis... [more]
D8LI17_ECTSI1.260e-2154.12Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7Y5PHZ7_9BURK1.700e-2160.49Superoxide dismutase n=1 Tax=Burkholderiaceae bact... [more]
A0A7S2V2G5_9STRA1.730e-2159.09Superoxide dismutase n=1 Tax=Fibrocapsa japonica T... [more]
L1LGM5_THEEQ1.860e-2156.10Superoxide dismutase n=1 Tax=Theileria equi strain... [more]
O34029_BURPE2.290e-2159.26Superoxide dismutase (Fragment) n=1 Tax=Burkholder... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16387contigP-wetherbeei_contig16387:397..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog640081.Dsui_3269
Preferred namesodB
PFAMsSod_Fe_C,Sod_Fe_N
Model size270
Max annot lvl206389|Rhodocyclales
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.5e-24
EggNOG OGsCOG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2VI2Y@28216|Betaproteobacteria,2KUV0@206389|Rhodocyclales
EC1.15.1.1
DescriptionDestroys radicals which are normally produced within the cells and which are toxic to biological systems
Cds size270
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.1990056-CDS-P-wetherbeei_contig16387:396..6661683186085.1990056-CDS-P-wetherbeei_contig16387:396..666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16387 397..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16387.1.1prot_P-wetherbeei_contig16387.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16387 397..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16387.1.1

>prot_P-wetherbeei_contig16387.1.1 ID=prot_P-wetherbeei_contig16387.1.1|Name=mRNA_P-wetherbeei_contig16387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MKAAGPAAGGVPKDATLLAKINAKWGSFDAFKLAFVTAAVAHFGSGWAWL
VVKGDLTLDIVTTHDATNPMMLGLGRPLLVCDVWEHGER*
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mRNA from alignment at P-wetherbeei_contig16387:397..666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16387.1.1 ID=mRNA_P-wetherbeei_contig16387.1.1|Name=mRNA_P-wetherbeei_contig16387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig16387:397..666- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGGCGGGGCCCGCGGCCGGCGGCGTTCCCAAGGATGCGACGCT CCTCGCGAAGATCAACGCCAAGTGGGGCAGCTTCGACGCCTTCAAGCTTG CCTTCGTCACGGCCGCCGTCGCCCACTTCGGGTCTGGTTGGGCGTGGCTC GTCGTGAAAGGCGACCTTACACTCGACATTGTCACGACGCATGACGCCAC CAACCCGATGATGCTGGGCCTCGGCCGCCCGCTGCTCGTGTGCGACGTCT GGGAGCATGGTGAGAGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16387:397..666-

>mRNA_P-wetherbeei_contig16387.1.1 ID=mRNA_P-wetherbeei_contig16387.1.1|Name=mRNA_P-wetherbeei_contig16387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig16387:397..666- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGGCGGGGCCCGCGGCCGGCGGCGTTCCCAAGGATGCGACGCT
CCTCGCGAAGATCAACGCCAAGTGGGGCAGCTTCGACGCCTTCAAGCTTG
CCTTCGTCACGGCCGCCGTCGCCCACTTCGGGTCTGGTTGGGCGTGGCTC
GTCGTGAAAGGCGACCTTACACTCGACATTGTCACGACGCATGACGCCAC
CAACCCGATGATGCTGGGCCTCGGCCGCCCGCTGCTCGTGTGCGACGTCT
GGGAGCATGGTGAGAGATGA
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