mRNA_P-wetherbeei_contig16314.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16314.1.1
Unique NamemRNA_P-wetherbeei_contig16314.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16314.1.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.580e-17
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QVHHTPTAGRLKAVEACEPRDVYWNNTYVTKRTRLLRRLFVDAFLALLYVFYIVPVTLIYLRFRS 195
            QVHHT   GRL+A EA EPRDVYW N ++ + TRL RR+ VDAFLA+LYVF++VPVT +YL F +
Sbjct:  384 QVHHTNKVGRLRAYEAPEPRDVYWQNAHIRRATRLRRRVLVDAFLAVLYVFWVVPVTGLYLVFST 448
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BLAST of mRNA_P-wetherbeei_contig16314.1.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.190e-10
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 QVHHTPTAGRLKAVEACEPRDVYWNNTYVTKRTRLLRRLFVDAFLALLYVFYIVPVTLIYL 183
            QV H    GR+ A E+ E RD+YW NT VT+  R  RR+ V+ FL +LYVFY+VPVTL+YL
Sbjct:  543 QVLHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGVLYVFYVVPVTLLYL 603
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BLAST of mRNA_P-wetherbeei_contig16314.1.1 vs. uniprot
Match: A0A7S1B8V0_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8V0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.030e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 QVHHTPTAGRLKAVEACEPRDVYWNNTYVTKRTRLLRRLFVDAFLALLYVFYIVPVTLI 177
            Q  H+   G ++   A EPRD+ W+N YV+K  +  RR   D F+ +L  FYIVPV L+
Sbjct:  653 QSMHSSKPGSMRVQTAPEPRDILWDNIYVSKGAKRTRRYLADIFVHVLIFFYIVPVALV 711
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16314.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z3W6_9STRA9.580e-1763.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JKU1_9PHAE1.190e-1055.74ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S1B8V0_9STRA8.030e-542.37Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16314contigP-wetherbeei_contig16314:1115..1393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQB2
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K21989
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.04e-11
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota
Descriptionion transport
Cds size279
COG categoryI
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.1893604-CDS-P-wetherbeei_contig16314:1114..13931683186083.1893604-CDS-P-wetherbeei_contig16314:1114..1393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16314 1115..1393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16314.1.1prot_P-wetherbeei_contig16314.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16314 1115..1393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16314.1.1

>prot_P-wetherbeei_contig16314.1.1 ID=prot_P-wetherbeei_contig16314.1.1|Name=mRNA_P-wetherbeei_contig16314.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
QVHHTPTAGRLKAVEACEPRDVYWNNTYVTKRTRLLRRLFVDAFLALLYV
FYIVPVTLIYLRFRSIKRAVMLPPCLCRKRLQRPHCRCWTMKA
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mRNA from alignment at P-wetherbeei_contig16314:1115..1393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16314.1.1 ID=mRNA_P-wetherbeei_contig16314.1.1|Name=mRNA_P-wetherbeei_contig16314.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig16314:1115..1393+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCCACCACACGCCGACGGCGGGGCGGCTGAAGGCAGTTGAGGCGTG
CGAGCCGCGCGACGTATACTGGAACAACACGTATGTGACCAAGCGGACGC
GGCTGCTGCGGCGCCTCTTTGTGGACGCCTTCCTCGCCCTCTTATACGTC
TTCTACATCGTCCCTGTGACGCTGATTTATCTACGCTTCAGGTCCATCAA
GAGGGCGGTCATGCTACCGCCCTGCCTTTGTCGAAAGAGACTGCAGAGAC
CGCATTGCCGTTGTTGGACCATGAAAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16314:1115..1393+

>mRNA_P-wetherbeei_contig16314.1.1 ID=mRNA_P-wetherbeei_contig16314.1.1|Name=mRNA_P-wetherbeei_contig16314.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig16314:1115..1393+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCCACCACACGCCGACGGCGGGGCGGCTGAAGGCAGTTGAGGCGTG
CGAGCCGCGCGACGTATACTGGAACAACACGTATGTGACCAAGCGGACGC
GGCTGCTGCGGCGCCTCTTTGTGGACGCCTTCCTCGCCCTCTTATACGTC
TTCTACATCGTCCCTGTGACGCTGATTTATCTACGCTTCAGGTCCATCAA
GAGGGCGGTCATGCTACCGCCCTGCCTTTGTCGAAAGAGACTGCAGAGAC
CGCATTGCCGTTGTTGGACCATGAAAGCA
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