mRNA_P-wetherbeei_contig16193.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16193.1.1
Unique NamemRNA_P-wetherbeei_contig16193.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: A0A345ZSV8_9HYPH (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZSV8_9HYPH)

HSP 1 Score: 192 bits (487), Expect = 9.310e-60
Identity = 97/120 (80.83%), Postives = 105/120 (87.50%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            MSAYFVTSTGTDIGKTFVTAGLIRYLR AGQ V ALKP+VSGYDSS   TSDPAVLLKALGR+ +A+EIA MAPWRFRAPLSPD+AAARE R ++FD LV FSRAAV+   GMLFIEGVG
Sbjct:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLREAGQSVEALKPVVSGYDSSTETTSDPAVLLKALGRETNAEEIAAMAPWRFRAPLSPDLAAARENRPIDFDALVGFSRAAVEGNKGMLFIEGVG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: A0A2W6B0G2_9HYPH (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2W6B0G2_9HYPH)

HSP 1 Score: 152 bits (383), Expect = 5.380e-44
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            MSA F+T TGTD+GKTFV AGLIRY R  GQPV ALKP+ SG+D +    SDPA LL ALGR+V+ DE+  ++PWRFRAP SPDMAA  E R+++   +VDF RAA+    G L IEG+G
Sbjct:    1 MSAVFITGTGTDVGKTFVAAGLIRYFRGLGQPVAALKPLASGFDPAAPSGSDPAALLNALGREVTPDEVQRISPWRFRAPFSPDMAAQAENRAIDLQAVVDFCRAAIAGNDGALLIEGIG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: UPI00056005D6 (dethiobiotin synthase n=1 Tax=Methylocapsa aurea TaxID=663610 RepID=UPI00056005D6)

HSP 1 Score: 150 bits (379), Expect = 2.100e-43
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            M A F+T  GTD+GKT+V AGL+R LR  GQPV+ALKP+VSG++      SDPA+LL ALGR ++ +E A ++PWRFRAPLSPDMAA  EGR++ F  L+DF +AA+  T G+L IEGVG
Sbjct:    1 MPAIFITGAGTDVGKTYVAAGLVRLLRRRGQPVDALKPVVSGFNPGSPSGSDPAILLDALGRAMTEEEFARISPWRFRAPLSPDMAAQAEGRAIAFQELIDFCQAAIARTDGLLLIEGVG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: B8ERM0_METSB (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2) TaxID=395965 RepID=B8ERM0_METSB)

HSP 1 Score: 149 bits (376), Expect = 5.810e-43
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            M+AYF+T +GTD+GKTFVTAGL+R LR  G+  +ALKP+VSG+D S  E SDPAVLL+ALGR  + + +  +APWRFRAPLSPDMAAA EGR+++ D +  F +AAV A  G++ IEG G
Sbjct:    1 MAAYFITGSGTDLGKTFVTAGLLRALRAQGRAADALKPVVSGFDPSAPEGSDPAVLLEALGRPPTTETLQKIAPWRFRAPLSPDMAAALEGRTIDLDEVAGFCQAAVAAAPGVMLIEGAG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: A0A539CX63_9HYPH (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A539CX63_9HYPH)

HSP 1 Score: 149 bits (376), Expect = 6.150e-43
Identity = 71/120 (59.17%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            MSA F+T TGT +GKTFV  GLIR  R   QPV+ALKP+VSG+DS +   SDPA+LL+ALGR+V+ +E+  ++PWRFRAPLSPDMAA  E R+++F+   DF RAA+ A +G L IEG+G
Sbjct:    1 MSAVFITGTGTGVGKTFVATGLIRCFRELRQPVDALKPVVSGFDSVLPSGSDPALLLEALGRKVNLEELQAISPWRFRAPLSPDMAARAENRAIDFEEAADFCRAAIAANSGTLLIEGIG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: A0A2N8MCP9_9HYPH (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A2N8MCP9_9HYPH)

HSP 1 Score: 149 bits (375), Expect = 8.710e-43
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            MSA F+T TGT +GKTFV AGLIRY R  GQPV ALKP+VSG+D +    SDPAVLL+ALGR+V+ +E+  ++PWRFRAPLSPDMAA  E ++++F  +VD +  A+  T G L IEG+G
Sbjct:    1 MSAVFITGTGTGVGKTFVAAGLIRYFRALGQPVAALKPLVSGFDLAAPSGSDPAVLLEALGREVTPEELNRISPWRFRAPLSPDMAARAENKAIDFQAVVDLAHTAIAGTDGALLIEGIG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: UPI000413C0E2 (dethiobiotin synthase n=1 Tax=Methylocapsa acidiphila TaxID=133552 RepID=UPI000413C0E2)

HSP 1 Score: 147 bits (370), Expect = 4.820e-42
Identity = 74/120 (61.67%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            M AYFVT  GTD+GKTFVTAGLIR+LR  G+ V+ALKPIVSG+D +    SDPA+LL+ALG + +  EIA ++PWRFRAPLSPDMAA  E R+++F+ L+   RAA  A  G+L IEGVG
Sbjct:    1 MPAYFVTGAGTDVGKTFVTAGLIRHLRRQGRVVDALKPIVSGFDPAAPARSDPAILLEALGLEANDAEIARISPWRFRAPLSPDMAARAEARAIDFEELLACCRAASAACDGVLLIEGVG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: UPI0003808303 (dethiobiotin synthase n=1 Tax=Methyloferula stellata TaxID=876270 RepID=UPI0003808303)

HSP 1 Score: 146 bits (369), Expect = 7.640e-42
Identity = 71/120 (59.17%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            M   F+T+TGTD GKTFVTAGLIR LR  GQ V+ALKP+ SG+D +  + SDPAVLL+ALGR+VS  E+  ++PWRF+APLSPDMAA +EGRS++ ++L  F +AA+    G++ IEGVG
Sbjct:    1 MPGVFITATGTDAGKTFVTAGLIRALRAGGQKVSALKPVASGFDETDPKGSDPAVLLEALGREVSPAELDAISPWRFKAPLSPDMAARKEGRSIDVEKLAAFCQAAIAGNDGLVLIEGVG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: A0A537T5L7_9PROT (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537T5L7_9PROT)

HSP 1 Score: 146 bits (369), Expect = 7.850e-42
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            MS  FVT+TGTDIGKTFVTAG+IR++R +G  + A+KPIVSG+D    + SDPAVLL ALGR  + +E+  +APWRF+APLSPDMA  REGR+++F  +V+F R A  A  G+L IEGVG
Sbjct:    1 MSVVFVTATGTDIGKTFVTAGVIRHIRASGGAIAAVKPIVSGFDPHAWQDSDPAVLLAALGRPATLEEVERIAPWRFKAPLSPDMAGRREGRTIQFRDVVEFCRNAAAAQRGLLLIEGVG 120
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BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Match: A0A6L5FGM7_9HYPH (ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FGM7_9HYPH)

HSP 1 Score: 145 bits (367), Expect = 2.370e-41
Identity = 74/120 (61.67%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVETSDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLVDFSRAAVKATTGMLFIEGVG 360
            M+A FVTSTGTDIGKTFVTAGLIR+LR +G+ V ALKP+V+G+D +    SDP VLL ALGR  S +EIA ++PWR+RA LSPDMAA REG +V+F +L  FS  A+     +LF+EGVG
Sbjct:    1 MTAIFVTSTGTDIGKTFVTAGLIRHLRASGRIVEALKPVVTGFDPTTAANSDPGVLLTALGRPASLEEIAKISPWRYRAALSPDMAARREGSAVDFAQLGKFSLRAILTRRDVLFVEGVG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16193.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A345ZSV8_9HYPH9.310e-6080.83ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]
A0A2W6B0G2_9HYPH5.380e-4460.00ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]
UPI00056005D62.100e-4359.17dethiobiotin synthase n=1 Tax=Methylocapsa aurea T... [more]
B8ERM0_METSB5.810e-4360.00ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]
A0A539CX63_9HYPH6.150e-4359.17ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]
A0A2N8MCP9_9HYPH8.710e-4359.17ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]
UPI000413C0E24.820e-4261.67dethiobiotin synthase n=1 Tax=Methylocapsa acidiph... [more]
UPI00038083037.640e-4259.17dethiobiotin synthase n=1 Tax=Methyloferula stella... [more]
A0A537T5L7_9PROT7.850e-4260.00ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]
A0A6L5FGM7_9HYPH2.370e-4161.67ATP-dependent dethiobiotin synthetase BioD n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16193contigP-wetherbeei_contig16193:1..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog663610.JQKO01000015_gene1888
Preferred namebioD
PFAMsAAA_26
Model size360
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC00460,RC00868
KEGG koko:K01935,ko:K02169
KEGG ReactionR03182,R09543
KEGG Pathwayko00780,ko01100,map00780,map01100
KEGG ModuleM00123,M00572,M00573,M00577
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue3.45e-44
EggNOG OGsCOG0132@1|root,COG0132@2|Bacteria,1RDRK@1224|Proteobacteria,2U5AJ@28211|Alphaproteobacteria,3NB1C@45404|Beijerinckiaceae
EC2.1.1.197,6.3.3.3
DescriptionCatalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
Cds size360
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186079.5758862-CDS-P-wetherbeei_contig16193:0..3601683186079.5758862-CDS-P-wetherbeei_contig16193:0..360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16193 1..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16193.1.1prot_P-wetherbeei_contig16193.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16193 1..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16193.1.1

>prot_P-wetherbeei_contig16193.1.1 ID=prot_P-wetherbeei_contig16193.1.1|Name=mRNA_P-wetherbeei_contig16193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MSAYFVTSTGTDIGKTFVTAGLIRYLRNAGQPVNALKPIVSGYDSSVVET
SDPAVLLKALGRQVSADEIATMAPWRFRAPLSPDMAAAREGRSVEFDRLV
DFSRAAVKATTGMLFIEGVG
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mRNA from alignment at P-wetherbeei_contig16193:1..360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16193.1.1 ID=mRNA_P-wetherbeei_contig16193.1.1|Name=mRNA_P-wetherbeei_contig16193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig16193:1..360- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCCTACTTCGTCACCTCGACCGGCACCGACATCGGCAAGACCTT
CGTCACCGCCGGGCTGATCCGCTATCTGCGCAATGCCGGCCAGCCGGTGA
ATGCGTTGAAGCCCATCGTCAGCGGCTACGACTCGTCCGTGGTCGAGACC
AGCGATCCGGCGGTGCTGCTCAAGGCGCTCGGCCGCCAGGTGTCGGCCGA
CGAAATCGCAACCATGGCGCCGTGGCGTTTCCGCGCGCCGCTGTCGCCCG
ACATGGCCGCCGCGCGCGAAGGCCGCAGCGTCGAGTTCGACCGGCTCGTC
GACTTCAGCCGCGCCGCCGTCAAGGCAACGACCGGCATGCTGTTCATCGA
AGGCGTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16193:1..360-

>mRNA_P-wetherbeei_contig16193.1.1 ID=mRNA_P-wetherbeei_contig16193.1.1|Name=mRNA_P-wetherbeei_contig16193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig16193:1..360- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCCTACTTCGTCACCTCGACCGGCACCGACATCGGCAAGACCTT
CGTCACCGCCGGGCTGATCCGCTATCTGCGCAATGCCGGCCAGCCGGTGA
ATGCGTTGAAGCCCATCGTCAGCGGCTACGACTCGTCCGTGGTCGAGACC
AGCGATCCGGCGGTGCTGCTCAAGGCGCTCGGCCGCCAGGTGTCGGCCGA
CGAAATCGCAACCATGGCGCCGTGGCGTTTCCGCGCGCCGCTGTCGCCCG
ACATGGCCGCCGCGCGCGAAGGCCGCAGCGTCGAGTTCGACCGGCTCGTC
GACTTCAGCCGCGCCGCCGTCAAGGCAACGACCGGCATGCTGTTCATCGA
AGGCGTCGGC
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