mRNA_P-wetherbeei_contig16168.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16168.1.1
Unique NamemRNA_P-wetherbeei_contig16168.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16168.1.1 vs. uniprot
Match: UPI001FE706FC (tetratricopeptide repeat protein n=1 Tax=Bradyrhizobium agreste TaxID=2751811 RepID=UPI001FE706FC)

HSP 1 Score: 148 bits (374), Expect = 2.190e-35
Identity = 91/222 (40.99%), Postives = 122/222 (54.95%), Query Frame = 1 
Query:  586 GAEPPIRDALAIADGVYELDYSVRRNLINRLGGALWAQGKFDDAERLHRDDLAHLEQKRGPAHPSTAIALQRLADVLASSGRQGEAIVLYQRSLAINEQS----------------------------RSEINIARTAWDARGFFLSAGYSLQQLAQLAFEQGVPAESVVFAEQYLKTVEQAFGSDSPVLVPAFATLARFYLVVGREIDAGKILLRIEALVG 1167
            GAE  +RDALA+A  +Y+ D+  RRN I+RL G L+ QGKFD+A  + R + A  E + G  HP+TA+AL+ LA   +SSG Q  AI L +R+LAI+EQS                            RSEIN AR  W+A G  L A  +L QLA +A  Q  P E++VF+E+    +E  +G +SPVL+   A L R  L  G    A +IL R   L+G
Sbjct:  750 GAENHVRDALAMAKRLYQPDFPTRRNAIDRLSGLLFVQGKFDEAVEIQRAEFALTETQLGSNHPATAVALRSLAATTSSSGDQAGAIELLRRALAIDEQSFGPQSDQAASNHLALGSLLRRMGRLDEARSEINAARKGWEALGHVLRASVALDQLALIAIAQTSPTEAIVFSERVQNILEDNYGRESPVLLANLAQLGRLRLRNGDTQAAVRILARTSDLIG 971
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BLAST of mRNA_P-wetherbeei_contig16168.1.1 vs. uniprot
Match: A0A7W6WVI9_9BRAD (Tetratricopeptide (TPR) repeat protein n=2 Tax=Bradyrhizobium sp. cir1 TaxID=1445730 RepID=A0A7W6WVI9_9BRAD)

HSP 1 Score: 144 bits (362), Expect = 8.370e-34
Identity = 89/220 (40.45%), Postives = 120/220 (54.55%), Query Frame = 1 
Query:  592 EPPIRDALAIADGVYELDYSVRRNLINRLGGALWAQGKFDDAERLHRDDLAHLEQKRGPAHPSTAIALQRLADVLASSGRQGEAIVLYQRSLAINEQS----------------------------RSEINIARTAWDARGFFLSAGYSLQQLAQLAFEQGVPAESVVFAEQYLKTVEQAFGSDSPVLVPAFATLARFYLVVGREIDAGKILLRIEALVG 1167
            E  +RDALA+A  +Y+ D   RRN ++RL G L+ QGKFD+A ++ R +LA  E + G  HP+TA+AL+ LA    SSG Q  AI L +R+L I+EQS                            RSEIN AR AW+A G  L+   +L QLA +A  Q  P E++VF+E+  K +E  +G DSP L+   A L R  L  G    A +IL R   L+G
Sbjct:  813 ENHVRDALAMAKRLYQPDVPNRRNAVDRLSGLLFVQGKFDEAVQIQRAELALTETQLGSNHPATAVALRSLAATTGSSGDQSGAIALLRRALVIDEQSFGPQSDQAATDHVALGSLLRRMGRLDEARSEINAARKAWEALGHVLTTIVALDQLALIALTQASPTEAIVFSERIRKILEDNYGRDSPALLTNLAQLGRLRLRNGETQAAAQILNRATDLMG 1032
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BLAST of mRNA_P-wetherbeei_contig16168.1.1 vs. uniprot
Match: UPI00131AA648 (tetratricopeptide repeat protein n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI00131AA648)

HSP 1 Score: 99.4 bits (246), Expect = 8.960e-19
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:  877 EQSRSEINIARTAWDARGFFLSAGYSLQQLAQLAFEQGVPAESVVFAEQYLKTVEQAFGSDSPVLVPAFATLARFYLVVGREIDAGKILLRIEALVG 1167
            E ++SE N+AR  W+ +G  L+A  SL+QLA +AF +G PAESVV  E+     EQ+FG DSP LVP  A L RFY++ GR   A KIL R+  L+G
Sbjct:  946 EGAQSETNLARNIWEGQGHLLAANSSLEQLALIAFNRGSPAESVVLVERAADIAEQSFGPDSPALVPILAELGRFYIIAGRNDAAEKILSRVNGLIG 1042
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BLAST of mRNA_P-wetherbeei_contig16168.1.1 vs. uniprot
Match: A0A2V0NL33_9CHLO (SAM domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NL33_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 2.180e-11
Identity = 62/205 (30.24%), Postives = 103/205 (50.24%), Query Frame = 1 
Query:  580 PAGAEPPIRDALAIADGVYELD---YSVRRNLI----NRLGGALWAQGKFDDAERLHRDDLAHLEQKRGPAHPSTAIALQRLADVLASSGRQGEAIVLYQRSLAINEQSRSEINIARTAWDARGFFLSAGYSLQQLAQLAFEQGVPAESVVFAEQYLKTVEQAFGSDSPVLVPAFATLARFYLVVGREIDA-GKILLRIEALVGK 1170
            P+ AEP +RD L  A+     +    S R  L+    N L  AL   G+ +DAE   R  LA  E++ GP HP+ A++LQ LA VL +  +   A     R L I  Q +S          A G  ++A  +L+ L  +A + G  +E++V A++ L+  +++  SD P L  + A +A   L++GR  +A  ++   ++  +G+
Sbjct: 1508 PSEAEPLVRDCLGTAEAQLPSEGPAASERNRLVASASNCLSEALRELGRLEDAEVACRTGLALREKEFGPDHPAVALSLQSLALVLRARQQLPAAAEAATRCLGIRAQHKST---------ADGPLMAAALNLKAL--VAIDSGDASEALVLAQKGLEIRQKSLASDHPDLAQSLACVAEALLLLGRRSEAEARLTSAVQIFIGR 1701
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BLAST of mRNA_P-wetherbeei_contig16168.1.1 vs. uniprot
Match: A0A6A6ZAI4_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Ophiobolus disseminans TaxID=1469910 RepID=A0A6A6ZAI4_9PLEO)

HSP 1 Score: 50.8 bits (120), Expect = 7.840e-5
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  694 AQGKFDDAERLHRDDLAHLEQKRGPAHPSTAIALQRLADVLASSGRQGEAIVLYQRSLAI 873
            +QGK+ +AE +HR  LA  E+  GP HP T  ++  LA VL +  +  + I  Y ++LA+
Sbjct:    1 SQGKYKEAEAMHRQTLALKEKVLGPEHPDTLTSMNNLASVLRAHSKYNKVIPTYTQTLAL 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001FE706FC2.190e-3540.99tetratricopeptide repeat protein n=1 Tax=Bradyrhiz... [more]
A0A7W6WVI9_9BRAD8.370e-3440.45Tetratricopeptide (TPR) repeat protein n=2 Tax=Bra... [more]
UPI00131AA6488.960e-1950.52tetratricopeptide repeat protein n=1 Tax=Bradyrhiz... [more]
A0A2V0NL33_9CHLO2.180e-1130.24SAM domain-containing protein n=1 Tax=Raphidocelis... [more]
A0A6A6ZAI4_9PLEO7.840e-538.33Uncharacterized protein (Fragment) n=1 Tax=Ophiobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16168contigP-wetherbeei_contig16168:191..1525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD24837
PFAMsTPR_10,TPR_12,TPR_4,TPR_7,TPR_8
Model size1170
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000766
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size1170
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186079.063867-CDS-P-wetherbeei_contig16168:190..4761683186079.063867-CDS-P-wetherbeei_contig16168:190..476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16168 191..476 -
1683186079.0721707-CDS-P-wetherbeei_contig16168:560..9401683186079.0721707-CDS-P-wetherbeei_contig16168:560..940Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16168 561..940 -
1683186079.0795681-CDS-P-wetherbeei_contig16168:1021..15251683186079.0795681-CDS-P-wetherbeei_contig16168:1021..1525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16168 1022..1525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16168.1.1prot_P-wetherbeei_contig16168.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16168 191..1525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16168.1.1

>prot_P-wetherbeei_contig16168.1.1 ID=prot_P-wetherbeei_contig16168.1.1|Name=mRNA_P-wetherbeei_contig16168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=390bp
LAQTLVSQGKLDEAETLIRRALGLFQQRLGPDHPRFGGALKTLASIEALR
GQDREAEDHYRQALAIDVKAIGEQSPAVAGDLLNLVPFLKRAGKFQDAKA
AIERALAINTAQFGSDSPTTTGAMQASANLAYEAGQYADARQLMDRIRQI
QERSFGPEHYYLAGSWAFALAPGHPSNIDILLGKADVAWAQNGPAGAEPP
IRDALAIADGVYELDYSVRRNLINRLGGALWAQGKFDDAERLHRDDLAHL
EQKRGPAHPSTAIALQRLADVLASSGRQGEAIVLYQRSLAINEQSRSEIN
IARTAWDARGFFLSAGYSLQQLAQLAFEQGVPAESVVFAEQYLKTVEQAF
GSDSPVLVPAFATLARFYLVVGREIDAGKILLRIEALVGK
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mRNA from alignment at P-wetherbeei_contig16168:191..1525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16168.1.1 ID=mRNA_P-wetherbeei_contig16168.1.1|Name=mRNA_P-wetherbeei_contig16168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig16168:191..1525- (Phaeothamnion wetherbeei SAG_119_79)
CTTGCGCAGACGCTGGTGTCGCAAGGCAAGCTTGATGAGGCCGAGACCCT
GATCCGGCGCGCGCTCGGACTTTTTCAGCAGCGGCTCGGACCCGACCATC
CCCGTTTCGGGGGCGCGCTGAAAACATTGGCGTCGATCGAGGCGCTCCGT
GGGCAGGACCGTGAAGCCGAGGATCATTACCGCCAGGCACTTGCAATCGA
TGTGAAGGCGATCGGCGAACAAAGCCCGGCCGTTGCCGGCGATCTGCTAA
ACCTTGTCCCTTTTTTGAAGCGCGCCGGCAAATTTCAGGATGCAAAGGCG
GCGATCGAGCGCGCGCTCGCGATCAACACCGCTCAATTCGGTTCGGATAG
CCCGACCACGACCGGAGCAATGCAGGCCTCCGCCAACTTGGCCTACGAAG
CCGGGCAGTATGCCGATGCACGTCAGCTGATGGACCGGATCCGGCAAATC
CAGGAGCGCAGCTTCGGGCCCGAGCATTATTACCTGGCCGGAAGCTGGGC
CTTCGTGGCGCGGCTCGATCTCGCCCAGGGTAAATTGAACGATGCAAGCG
CCAGCATCAATCGGGCCGCACAGATCATGAGCAAGGCGCTTGCTCCCGGG
CACCCATCCAACATCGACATTCTTCTGGGCAAGGCCGACGTCGCATGGGC
GCAAAATGGGCCGGCCGGCGCCGAGCCACCGATTCGCGATGCCCTTGCCA
TCGCGGACGGGGTGTATGAGCTGGATTATTCGGTCCGGCGAAACCTGATC
AATCGGTTGGGCGGAGCGCTGTGGGCTCAAGGCAAGTTCGACGATGCGGA
GCGTCTGCACCGTGACGATCTGGCCCACCTCGAGCAGAAGCGCGGGCCCG
CTCACCCAAGCACCGCGATTGCGCTTCAAAGGCTCGCCGACGTTCTTGCC
AGTTCAGGTCGTCAGGGCGAAGCCATCGTGCTTTATCAGCGATCGCTCGC
GATCAATGAGCAGTCGTTCGGCCCGTTGGGCGACCAAGCCGCGTGGAACC
ATCTTGCGCTCGGGTCGCTGTACCGCAGGGTAGGAAAGTTCGACATGAGC
CGGAGCGAGATCAACATTGCCCGGACTGCATGGGATGCCCGCGGCTTCTT
CCTGTCAGCCGGCTATTCGCTCCAACAGCTGGCCCAGCTCGCTTTCGAGC
AAGGTGTTCCTGCGGAGAGCGTCGTGTTCGCCGAGCAGTATCTGAAAACG
GTCGAACAGGCTTTCGGGTCAGACAGTCCGGTACTCGTCCCGGCGTTCGC
AACTCTCGCCCGCTTCTATCTCGTCGTCGGGCGTGAAATTGACGCGGGCA
AAATTCTGCTGCGCATCGAAGCCCTGGTCGGCAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16168:191..1525-

>mRNA_P-wetherbeei_contig16168.1.1 ID=mRNA_P-wetherbeei_contig16168.1.1|Name=mRNA_P-wetherbeei_contig16168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig16168:191..1525- (Phaeothamnion wetherbeei SAG_119_79)
CTTGCGCAGACGCTGGTGTCGCAAGGCAAGCTTGATGAGGCCGAGACCCT
GATCCGGCGCGCGCTCGGACTTTTTCAGCAGCGGCTCGGACCCGACCATC
CCCGTTTCGGGGGCGCGCTGAAAACATTGGCGTCGATCGAGGCGCTCCGT
GGGCAGGACCGTGAAGCCGAGGATCATTACCGCCAGGCACTTGCAATCGA
TGTGAAGGCGATCGGCGAACAAAGCCCGGCCGTTGCCGGCGATCTGCTAA
ACCTTGTCCCTTTTTTGAAGCGCGCCGGCAAATTTCAGGATGCAAAGGCG
GCGATCGAGCGCGCGCTCGCGATCAACACCGCTCAATTCGGTTCGGATAG
CCCGACCACGACCGGAGCAATGCAGGCCTCCGCCAACTTGGCCTACGAAG
CCGGGCAGTATGCCGATGCACGTCAGCTGATGGACCGGATCCGGCAAATC
CAGGAGCGCAGCTTCGGGCCCGAGCATTATTACCTGGCCGGAAGCTGGGC
CTTCGCGCTTGCTCCCGGGCACCCATCCAACATCGACATTCTTCTGGGCA
AGGCCGACGTCGCATGGGCGCAAAATGGGCCGGCCGGCGCCGAGCCACCG
ATTCGCGATGCCCTTGCCATCGCGGACGGGGTGTATGAGCTGGATTATTC
GGTCCGGCGAAACCTGATCAATCGGTTGGGCGGAGCGCTGTGGGCTCAAG
GCAAGTTCGACGATGCGGAGCGTCTGCACCGTGACGATCTGGCCCACCTC
GAGCAGAAGCGCGGGCCCGCTCACCCAAGCACCGCGATTGCGCTTCAAAG
GCTCGCCGACGTTCTTGCCAGTTCAGGTCGTCAGGGCGAAGCCATCGTGC
TTTATCAGCGATCGCTCGCGATCAATGAGCAGTCCCGGAGCGAGATCAAC
ATTGCCCGGACTGCATGGGATGCCCGCGGCTTCTTCCTGTCAGCCGGCTA
TTCGCTCCAACAGCTGGCCCAGCTCGCTTTCGAGCAAGGTGTTCCTGCGG
AGAGCGTCGTGTTCGCCGAGCAGTATCTGAAAACGGTCGAACAGGCTTTC
GGGTCAGACAGTCCGGTACTCGTCCCGGCGTTCGCAACTCTCGCCCGCTT
CTATCTCGTCGTCGGGCGTGAAATTGACGCGGGCAAAATTCTGCTGCGCA
TCGAAGCCCTGGTCGGCAAA
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