mRNA_P-wetherbeei_contig16159.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16159.1.1
Unique NamemRNA_P-wetherbeei_contig16159.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: D7FKY3_ECTSI (Outer dynein arm docking complex protein oda-dc n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.040e-23
Identity = 88/210 (41.90%), Postives = 115/210 (54.76%), Query Frame = 1
Query:    1 LKLDAVRDLDAFHNEFQDMVGQLSLSKPGDASASKAHLEAMLRQQASVMSVESMSVGGGGGSWAXXXXXXSTGRRSPAGRSPN-GREPPASASHDLRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDRCRT 627
            LK + V+DL++F  EFQ M   L+ +K      S A LE M R +      +       G S  XXXXXX        G  P  G   P S +  L  +S M++W+ILKKKNDLQ+KAAR QEL+  L++I  AT L  + DFVP+MLEAE+EN++LFKLINELN+E                    A  ++ Q  +K  LQQQIDR R+
Sbjct:  230 LKQEVVKDLESFREEFQGMTESLAAAKEA-TQESNAKLEYMTRSRPPGAGEDEE-----GESXXXXXXXXXXXXXXXXGGPPGAGEVQPLSRAKRLHQQSIMSFWLILKKKNDLQAKAARVQELRAMLEKISAATSLTTLDDFVPVMLEAEDENYNLFKLINELNKE--------------------AGSKKSQQAVKLSLQQQIDRYRS 413          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A835Z6M1_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.180e-18
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  268 SASHDLRL--ESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQI 612
            S ++ +RL  +S  AYW IL KK+DL +KAARAQEL+  L++I  A+    + +FVP M+EAEEE +SLF+LINELNRELE+L+ +R+R+   A+ L  A   + +   KAEL+ QI
Sbjct:  284 SVTNSMRLKQQSLNAYWAILNKKSDLVAKAARAQELEDALQQICAASQGGSLEEFVPAMVEAEEEGYSLFRLINELNRELEELDAERARMAAAADALRRADASE-KSAAKAELRAQI 399          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: F0Y881_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y881_AURAN)

HSP 1 Score: 65.1 bits (157), Expect = 8.690e-9
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  280 DLRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDAT-------------GLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAE--TLSHAARRQHQHLMKAELQQQI 612
            DL+ E N AYWV+ K + DL  +  R +EL     +I   T             G   +   VPL+L++EEEN+ +F+ INELN+ELE LE+++  + ++ E   L++  R   +  MK EL  Q+
Sbjct:  232 DLQQEVNKAYWVVAKTRMDLTKQIERKEELHSAFDKICSETKTHVDPSADPALKGKHPLEGLVPLLLKSEEENYLVFRTINELNQELETLELEKVSLEDDMEQRALANEDRLHQEENMKKELGAQL 357          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A485LKB0_9STRA (Aste57867_20700 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKB0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-8
Identity = 41/124 (33.06%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  247 NGREPPASASHDLRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDR 618
            NGRE   +    LR E+    W+I  K+ DL+ +A R +  +  L +I   TG++ I +    ++ AEE+NFSLF +INELN E+E +E++ +R     +    +    ++  +KA L++QI++
Sbjct:  220 NGRES-GTPDAKLRDETLKTSWLISAKEADLRKQAERLKAYEDGLAKIRKKTGIKDIGELANALMAAEEKNFSLFNMINELNTEMEAVEIENNRFQEMIDECKGSGSDLNRARIKASLEEQIEK 342          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A7S1UCH1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCH1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.170e-8
Identity = 37/116 (31.90%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  283 LRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQ--HQHLMKAELQQQIDRCR 624
            LR      YW I K+K DL+       EL+  L R+  +TG+  + + +P++  +EE+N+SL+ +IN+L +E+E+LEV++  +  E       A  Q  ++  +K +L++QI + R
Sbjct:  271 LRKSVAKQYWGIAKRKLDLEELDTNIVELEGNLDRLKSSTGVTDVKELIPILQSSEEQNYSLYNMINDLTKEMEELEVEKQTLDKEMSKYQDIAALQAENRQRIKRDLEEQIRKSR 386          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A6G0WJD7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJD7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.770e-8
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  283 LRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDR 618
            LR E+    W+I  K+ DL+ +  R +  +  L +I   TG++ I +    ++ AEE+NFSLF +INELN E+E +E++ +R          +    H+  +KA L++QI++
Sbjct:  216 LREETLKQSWLISAKEADLRKQTERLKAYEDGLAKIRKKTGIKDIGELANALVAAEEKNFSLFNMINELNTEMEAVEIENNRFQEMIHACQDSGSDLHRARIKASLEEQIEK 327          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A1V9ZGL4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGL4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.190e-8
Identity = 38/122 (31.15%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  265 ASASHDLRLESNM--AYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDRCR 624
            AS + D +L  +   A W+I  K  DL+ +  R +  +  L +I   TG++ + +    ++ AEE+NFSLF +INELN E+E +E++ +R  +  + +       ++  +KA L++QI++ R
Sbjct:  222 ASGTPDAKLRDDTLKASWLISAKDADLRKQTERLRAYEDGLAKIRKKTGIKDVGELASALIAAEEKNFSLFNMINELNTEMESVEIENNRFQDMIKEVQGCGSDLNRARIKASLEEQIEKSR 343          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A1W0AAZ0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAZ0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-7
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  265 ASASHDLRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDR 618
            A A H  R E+  A W+I  K  DL+ +  R +  +  L +I   TG++ + +    ++ AEE+NFSLF +INELN E+E +E++ +R  N  +         ++  +KA L++QI++
Sbjct:  212 ADAKH--REETMKASWLISAKDADLRKQTERLKAYEDGLAKIRKKTGIKDVGELANALIAAEEKNFSLFNMINELNTEMESVEIENNRFLNLIKECQGCGSDINRARIKASLEEQIEK 327          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: W4FFA6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFA6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-7
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  283 LRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDR 618
            LR E+    W+I  K+ DL+ +  R +  +  L +I   TG++ I +    ++ AEE+NFSLF +INELN E+E +E++ +R  +       +    ++  +KA L++QID+
Sbjct:  224 LRDETLKTSWLISAKEADLRKQTERLKAYEDGLAKIRKKTGIKDIGELANALMSAEEKNFSLFNMINELNTEMEAVEIENNRFQDMIVECQGSGSDINRARIKASLEEQIDK 335          
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Match: A0A024UJA1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJA1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-7
Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  283 LRLESNMAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAEEENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAELQQQIDR 618
            LR E+    W+I  K+ DL+ +  R +  +  L +I   TG++ I +    ++ AEE+NFSLF +INELN E+E +E++ +R  +  +    +    ++  +KA L++QI++
Sbjct:  222 LRDETLKTSWLISAKEADLRKQTERLKSYEDGLAKIRKKTGIKDIGELANALMSAEEKNFSLFNMINELNTEMEAVEIENNRFQDMIQECQGSGSDINRVRIKASLEEQIEK 333          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FKY3_ECTSI4.040e-2341.90Outer dynein arm docking complex protein oda-dc n=... [more]
A0A835Z6M1_9STRA4.180e-1849.57Plastocyanin-like domain-containing protein n=1 Ta... [more]
F0Y881_AURAN8.690e-934.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A485LKB0_9STRA2.100e-833.06Aste57867_20700 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1UCH1_9STRA2.170e-831.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WJD7_9STRA3.770e-833.04Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZGL4_9STRA5.190e-831.15Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0AAZ0_9STRA1.720e-733.05Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4FFA6_9STRA1.720e-733.04Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A024UJA1_9STRA1.730e-732.14Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16159contigP-wetherbeei_contig16159:58..1542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKY3
Model size627
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.63e-24
EggNOG OGs2ENQM@1|root,2SS36@2759|Eukaryota
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.7623649-CDS-P-wetherbeei_contig16159:57..1901683186078.7623649-CDS-P-wetherbeei_contig16159:57..190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16159 58..190 -
1683186078.7705057-CDS-P-wetherbeei_contig16159:492..6421683186078.7705057-CDS-P-wetherbeei_contig16159:492..642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16159 493..642 -
1683186078.778291-CDS-P-wetherbeei_contig16159:880..11731683186078.778291-CDS-P-wetherbeei_contig16159:880..1173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16159 881..1173 -
1683186078.7871032-CDS-P-wetherbeei_contig16159:1491..15421683186078.7871032-CDS-P-wetherbeei_contig16159:1491..1542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16159 1492..1542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16159.1.1prot_P-wetherbeei_contig16159.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16159 58..1542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16159.1.1

>prot_P-wetherbeei_contig16159.1.1 ID=prot_P-wetherbeei_contig16159.1.1|Name=mRNA_P-wetherbeei_contig16159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
LKLDAVRDLDAFHNEFQDMVGQLSLSKPGDASASKAHLEAMLRQQASVMS
VESMSVGGGGGSWAVGGGGGSTGRRSPAGRSPNGREPPASASHDLRLESN
MAYWVILKKKNDLQSKAARAQELQRTLKRILDATGLRGISDFVPLMLEAE
EENFSLFKLINELNRELEQLEVKRSRVHNEAETLSHAARRQHQHLMKAEL
QQQIDRCRT
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mRNA from alignment at P-wetherbeei_contig16159:58..1542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16159.1.1 ID=mRNA_P-wetherbeei_contig16159.1.1|Name=mRNA_P-wetherbeei_contig16159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1485bp|location=Sequence derived from alignment at P-wetherbeei_contig16159:58..1542- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGCTGGATGCCGTGCGGGACCTCGACGCCTTTCACAACGAGTTCCA GGTAGGTGTAGGTGACTGTCGAGGCGGGGGGTTGCTGTCAGCCATTTCAT GCTCTCTACAGATTCGTTTTTCGAGGTTTATCGGACCTGCCGTTCTCATT TTCATTTTATTTTGCCTTGTTTGGAGTTCTTACGACGTTATTTAGATCTC CCTCCCGGCGAGATGGAGCGAAATGCGGCGTGATCGCCGGGGGAAAGCAA CAATCCCTCCATTCTTCAACTCCCACGTGAAACCCACGCATTTGGCAAGC CGTTTGTTCGTCGTTGTTTCCCCTCGGGGCAAGAACCAATGGATGTACCG ATCTGCTCGCATACTGCAGGATATGGTGGGGCAGCTGTCCCTCAGCAAGC CTGGCGACGCCAGTGCCTCAAAGGCCCACCTAGAGGCCATGCTGCGGCAG CAGGCCTCCGTGATGAGCGTCGAATCCATGAGCGTCGGCGGCGGCGGCGG GTCGTGGGCGGTTGGCGGCGGCGGTGGCAGCACGGGGCGACGAAGTCCCG CCGGCCGGAGCCCGAACGGCCGGGAGCCGCCAGCGAGTGCGTCGCACGAT CTCCGGCTGGAGAGCAACATGGCGTACTGGGTCATTCTGAAAAAGAAGAA CGACCTGCAGAGGTGAAACGAAGGGTATCTGGTCTTGCTTCCCTCTGCTC TTCTTGCTGCCTGTTACTTCCTATGTTCCGCTACACTCCTCTATCGAGTT ACTGTCGTTTTTCTATCCCCCACATGGAAGGAACCGGGACAGCTGCAGAC GAGCAGGAAGGTGACTATGCTTGGCGGGTTTTCTGCCTGACATTTTACAG ATTTCCATGTTTCCTCGTTAAAATAAAACGAAACTTCTATGACGCTGCAG CAAAGCGGCACGGGCACAGGAGCTGCAGAGGACGCTGAAGCGCATCCTGG ACGCGACGGGGCTGCGCGGCATCAGCGACTTCGTGCCACTGATGCTCGAG GCCGAGGAGGAGAACTTTTCGCTATTCAAGCTCATCAACGAGCTCAACAG GTGACCAGATGACAGTATCAACTAGCTCCGCAAGCTGATATTCTGATTTT GCTCCGCCAGTGTTGATACCAGGAACCTGTCGGTCCTCTGTCTTGTCCAC TGGCCTACCGAGCGCTGTAGCTGCCTGCAGGGAACTAATTCTGTAATCTG AAGCGACCCGCTTGCCGTCTCTTCTCTTCCTTTCCATTGTATTAACTTGC CTCAGCCTGGCGGTTTCGCCCACCCGGGTTACTTGCCGGAGAAATGCTGC GCTAGACCGGCTGACGTATCTACCTCTCTTCCAACTTCCCGTGGCAAAAC AGGGAGCTGGAGCAGCTGGAGGTGAAACGGAGCCGGGTCCACAACGAGGC GGAAACGTTGAGCCACGCGGCGCGGCGGCAGCACCAGCACCTCATGAAGG CCGAGCTGCAGCAGCAGATTGATCGCTGCCGGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16159:58..1542-

>mRNA_P-wetherbeei_contig16159.1.1 ID=mRNA_P-wetherbeei_contig16159.1.1|Name=mRNA_P-wetherbeei_contig16159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig16159:58..1542- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGCTGGATGCCGTGCGGGACCTCGACGCCTTTCACAACGAGTTCCA
GGATATGGTGGGGCAGCTGTCCCTCAGCAAGCCTGGCGACGCCAGTGCCT
CAAAGGCCCACCTAGAGGCCATGCTGCGGCAGCAGGCCTCCGTGATGAGC
GTCGAATCCATGAGCGTCGGCGGCGGCGGCGGGTCGTGGGCGGTTGGCGG
CGGCGGTGGCAGCACGGGGCGACGAAGTCCCGCCGGCCGGAGCCCGAACG
GCCGGGAGCCGCCAGCGAGTGCGTCGCACGATCTCCGGCTGGAGAGCAAC
ATGGCGTACTGGGTCATTCTGAAAAAGAAGAACGACCTGCAGAGCAAAGC
GGCACGGGCACAGGAGCTGCAGAGGACGCTGAAGCGCATCCTGGACGCGA
CGGGGCTGCGCGGCATCAGCGACTTCGTGCCACTGATGCTCGAGGCCGAG
GAGGAGAACTTTTCGCTATTCAAGCTCATCAACGAGCTCAACAGGGAGCT
GGAGCAGCTGGAGGTGAAACGGAGCCGGGTCCACAACGAGGCGGAAACGT
TGAGCCACGCGGCGCGGCGGCAGCACCAGCACCTCATGAAGGCCGAGCTG
CAGCAGCAGATTGATCGCTGCCGGACA
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