mRNA_P-wetherbeei_contig16137.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16137.1.1
Unique NamemRNA_P-wetherbeei_contig16137.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A6H5L4K1_9PHAE (GH16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K1_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.040e-63
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ 402
            D+W+HEIT  GGGNWEFQ Y NNR+NS+ EDG LF+QPTLT D++G + VSG  P T D+WG+ PA QCT NMFYGCSR SN AARIAINPV SAR+RTAGTFSFRYGR+EV+AKLP+GDWLWP   + L P Q
Sbjct:   55 DLWQHEITMGGGGNWEFQMYGNNRTNSYVEDGKLFLQPTLTSDYMGEEQVSGVSPTTFDMWGLVPADQCTSNMFYGCSRASNMAARIAINPVMSARVRTAGTFSFRYGRMEVKAKLPKGDWLWPA--IWLLPEQ 186          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A4D9CN72_9STRA (GH16 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CN72_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.600e-58
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1
Query:    1 DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ 402
            +IW H+IT AGGGNWEFQYYTNNRSNSF E+GVL++QPTLTE+ IG   + GEKPF  D+WG+ P+  CT N FYGC R S+  A++ INPVQSARLRT GTF+F+YGR+EV AKLPRGDWLWP   + L P +
Sbjct:  136 EIWAHDITMAGGGNWEFQYYTNNRSNSFVEEGVLYLQPTLTEETIGEANMMGEKPFRFDMWGMWPSDACTSNAFYGCERISDAGAQLVINPVQSARLRTTGTFTFQYGRLEVEAKLPRGDWLWPA--IWLLPEK 267          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A7S3DIZ0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DIZ0_9EUKA)

HSP 1 Score: 182 bits (462), Expect = 3.530e-55
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    4 IWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNR-AARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFP 396
            +W+HEITA+G GNWEF+YYTNNRSNS+  D VL+IQPTLT +  G+D V     FTLDLWG TPA QCT N FYGCSR +   A   AINP+QSARLRT  +FSF+YGRVEVRAKLP+GDWLWP   + L P
Sbjct:   57 VWQHEITASGAGNWEFEYYTNNRSNSYVNDSVLYIQPTLTSETYGSDNVW--NGFTLDLWGSTPADQCTSNAFYGCSRAAQADAGGNAINPIQSARLRTVNSFSFKYGRVEVRAKLPKGDWLWPA--IWLIP 184          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A7S3GC02_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GC02_9EUKA)

HSP 1 Score: 182 bits (462), Expect = 1.580e-53
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    4 IWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNR-AARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFP 396
            +W+HEITA+G GNWEF+YYTNNRSNS+  D VL+IQPTLT +  G+D V     FTLDLWG TPA QCT N FYGCSR +   A   AINP+QSARLRT  +FSF+YGRVEVRAKLP+GDWLWP   + L P
Sbjct:  100 VWQHEITASGAGNWEFEYYTNNRSNSYVNDSVLYIQPTLTSETYGSDNVW--NGFTLDLWGSTPADQCTSNAFYGCSRAAQADAGGNAINPIQSARLRTVNSFSFKYGRVEVRAKLPKGDWLWPA--IWLIP 227          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A7S3H4A6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4A6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.360e-53
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    4 IWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWP 372
            IWKHEIT  GGGNWEF+YY NNRSNSF  D  LFI+PTLT D +G   VSGE P TLDLWG TPA  CT N FYGCSR S       +NP+ SARLRT  +FSF+YGR+E+ AKLPRGDWLWP
Sbjct:   37 IWKHEITMGGGGNWEFEYYANNRSNSFVRDKTLFIKPTLTADRMGKQQVSGEIPSTLDLWGGTPADVCTSNAFYGCSRGSGGGN--VLNPIASARLRTVNSFSFKYGRLEIEAKLPRGDWLWP 157          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: UPI001BB27A13 (beta-1,3-glucan-binding protein-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB27A13)

HSP 1 Score: 173 bits (438), Expect = 3.230e-50
Identity = 81/134 (60.45%), Postives = 101/134 (75.37%), Query Frame = 1
Query:    1 DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ 402
            DIW+HEITA GGGNWEFQYYTNNRSNS+ +DG LFI+PTLTED +G  +V+  +   LDLWG +PA+ CT + ++GC R     A   +NP+QSARLRT  +FSF+YGR+EV AKLP GDWLWP   + L PT+
Sbjct:   54 DIWEHEITAGGGGNWEFQYYTNNRSNSYVKDGKLFIKPTLTEDLLGPGSVTSAR---LDLWGASPANLCTGHAWWGCDRTGT--ADNILNPIQSARLRTVDSFSFKYGRLEVEAKLPTGDWLWPA--IWLLPTR 180          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A835ZB27_9STRA (Glucan binding protein-2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB27_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.750e-50
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 DIWKHEITAAG--GGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ 402
            D+W+HEITA G  GGNWEFQY+TNNR+N+F   G L IQPTLT      D V+G  P TLDLWG +PA  CT N FYGC R SN  A +++ PVQSA LRTA +FSFRYGRVEV AKLPRGDW+ P   + L P +
Sbjct:   45 DLWEHEITAGGAKGGNWEFQYFTNNRTNTFVSGGALHIQPTLTAQLFTEDGVTGVTPATLDLWGSSPADACTSNAFYGCGRSSNAIAHMSLPPVQSASLRTAESFSFRYGRVEVVAKLPRGDWIKPS--ISLLPAR 178          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: UPI001BB16B69 (beta-1,3-glucan-binding protein-like isoform X3 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB16B69)

HSP 1 Score: 175 bits (444), Expect = 8.380e-50
Identity = 82/134 (61.19%), Postives = 101/134 (75.37%), Query Frame = 1
Query:    1 DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ 402
            DIW+HEITA GGGNWEFQYYTNNRSNS+ +DG LFI+PTLTED +G  +V+  +   LDLWG +PA+ CT N ++GC R     A   +NP+QSARLRT  +FSF+YGR+EV AKLP GDWLWP   + L PT+
Sbjct:  205 DIWEHEITAGGGGNWEFQYYTNNRSNSYVKDGKLFIKPTLTEDLLGEGSVTSSR---LDLWGASPANLCTGNAWWGCDRTGT--ADNILNPIQSARLRTVDSFSFKYGRLEVEAKLPTGDWLWPA--IWLLPTR 331          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: UPI001BB24F56 (beta-1,3-glucan-binding protein-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB24F56)

HSP 1 Score: 175 bits (444), Expect = 2.060e-49
Identity = 82/134 (61.19%), Postives = 101/134 (75.37%), Query Frame = 1
Query:    1 DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ 402
            DIW+HEITA GGGNWEFQYYTNNRSNS+ +DG LFI+PTLTED +G  +V+  +   LDLWG +PA+ CT N ++GC R     A   +NP+QSARLRT  +FSF+YGR+EV AKLP GDWLWP   + L PT+
Sbjct:  264 DIWEHEITAGGGGNWEFQYYTNNRSNSYVKDGKLFIKPTLTEDLLGEGSVTSSR---LDLWGASPANLCTGNAWWGCDRTGT--ADNILNPIQSARLRTVDSFSFKYGRLEVEAKLPTGDWLWPA--IWLLPTR 390          
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Match: A0A1S3JCY2_LINUN (beta-1,3-glucan-binding protein-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JCY2_LINUN)

HSP 1 Score: 169 bits (429), Expect = 2.270e-48
Identity = 80/133 (60.15%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    1 DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAVSGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTAGTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPT 399
            + W+HEITA GGGNWEFQYYTNNRSN++  DGVLFI+PTLT D  G   +S  +   LDLWG  PA +CT N FYGC R  N  A   INP+QS RLRTA +F FRYGRVE+ AK+P GDW+WP   + + PT
Sbjct:  179 NTWEHEITAGGGGNWEFQYYTNNRSNTYVRDGVLFIKPTLTADKFGEAFLSSGR---LDLWGSGPADRCTGNAFYGCERHGN--ANNYINPIQSGRLRTAHSFDFRYGRVEIEAKMPTGDWIWPA--IWMLPT 304          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16137.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K1_9PHAE1.040e-6370.15GH16 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9CN72_9STRA3.600e-5865.67GH16 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S3DIZ0_9EUKA3.530e-5565.91Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3GC02_9EUKA1.580e-5365.91Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3H4A6_9STRA4.360e-5367.48Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI001BB27A133.230e-5060.45beta-1,3-glucan-binding protein-like n=1 Tax=Lytec... [more]
A0A835ZB27_9STRA4.750e-5061.03Glucan binding protein-2 n=1 Tax=Tribonema minus T... [more]
UPI001BB16B698.380e-5061.19beta-1,3-glucan-binding protein-like isoform X3 n=... [more]
UPI001BB24F562.060e-4961.19beta-1,3-glucan-binding protein-like isoform X1 n=... [more]
A0A1S3JCY2_LINUN2.270e-4860.15beta-1,3-glucan-binding protein-like n=1 Tax=Lingu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16137contigP-wetherbeei_contig16137:218..1546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_006529-tr
Preferred nameGNBPB1
PFAMsCBM39,Glyco_hydro_16
Model size402
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.93e-48
EggNOG OGsCOG2273@1|root,2QRX5@2759|Eukaryota,38FWG@33154|Opisthokonta,3BF4Y@33208|Metazoa,3D1TU@33213|Bilateria
DescriptionGlycosyl hydrolases family 16
Cds size402
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.125739-CDS-P-wetherbeei_contig16137:217..4011683186078.125739-CDS-P-wetherbeei_contig16137:217..401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16137 218..401 -
1683186078.1375372-CDS-P-wetherbeei_contig16137:1130..13011683186078.1375372-CDS-P-wetherbeei_contig16137:1130..1301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16137 1131..1301 -
1683186078.1479146-CDS-P-wetherbeei_contig16137:1499..15461683186078.1479146-CDS-P-wetherbeei_contig16137:1499..1546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16137 1500..1546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16137.1.1prot_P-wetherbeei_contig16137.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16137 218..1546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16137.1.1

>prot_P-wetherbeei_contig16137.1.1 ID=prot_P-wetherbeei_contig16137.1.1|Name=mRNA_P-wetherbeei_contig16137.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
DIWKHEITAAGGGNWEFQYYTNNRSNSFTEDGVLFIQPTLTEDFIGADAV
SGEKPFTLDLWGVTPASQCTINMFYGCSRESNRAARIAINPVQSARLRTA
GTFSFRYGRVEVRAKLPRGDWLWPGERVCLFPTQ
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mRNA from alignment at P-wetherbeei_contig16137:218..1546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16137.1.1 ID=mRNA_P-wetherbeei_contig16137.1.1|Name=mRNA_P-wetherbeei_contig16137.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1329bp|location=Sequence derived from alignment at P-wetherbeei_contig16137:218..1546- (Phaeothamnion wetherbeei SAG_119_79)
GACATTTGGAAACATGAAATTACCGCTGCGGGAGGCGGAAACTGGGAGTG AGCATGCTTGCATCTGTCTGCCATCGCTTTCGCTTATTCTTTGTGCTGTC CGCGTCTTCCAAACGAGCCTCTCTGTTCTTTTGATCGGCAACGGCTCTCG TTCTTGTCGTCAGCAATTCCCGACCATTAAGACGCAGGCCTATTTACTCT TTTTGCTTCCCTATCGCCCGTCCTATTTCTCCTTACGCCGGTCAGGTTTC AGTATTATACCAACAACCGGTCAAACTCTTTCACGGAGGACGGCGTTCTC TTCATCCAGCCGACGCTGACGGAGGATTTCATCGGTGCTGACGCCGTGTC CGGGGAGAAGCCCTTCACGCTCGATTTATGGGGTGTCACACCTGCCTCGC AGTGCACCATCAACATGTGAGCGGCGCTGGCAGCGGATCCGCATTGCCTT TGATCACGTTTGTAGAGTATAAAATAATTTGGCTTAAGAACCGTGCCAGC AGTTGGATAGGGAGTATGAAGCAGCTCATTGTAGCAGCAGCAGCAGCAGA ACTGGCGGCGGTAATAGCGGCAGCAACGGAATGGCCACCGCTACGGCCGT TCGAATGACATGGGGCGCCCCCGTCTTCCCTTGCCCTGTCGTCGCCGCTA GGCGCTGCTGCAGCCTGCGTCGTAAGATCACTGCAGCAGCGATTAGCGCC CCGTGCCGACGATGCAAATTCCCCTTTCCTCGCGGGCGCCAGGAACGTAC CGGGCGACAACGGAACAAGGTGCCGCTGTCGTCCCCCGAAGAACTTCTTG TAGGGGTTTTGGAAGCATAAAATGGCTCAGGGATTGCAGCTGTCCGCACT GCTTTGCTCGAGGAGGGCGAAGATCCCATCTAGCTAGCCAGCAAGCCAAC TGAGGCACCTTGGCTGGCCGCTCGAGATGCGTTGGGGCGGATCTCACGAA GCTCTCTTGTTTTCCTTAAGCCGGGGTAGGAGTCGAGAAGCCATTGCAGC AGTGCGGGTTAGGAATCGAGTGGAGGGCATGTTCCCTTATGTTTGACGGG TAAACCTTGCCGTAATGTGTTCCTTCGCCGTCGACTCTTGACTCAGCCGC CCGCCGCTGCTGAAGCACCAAACGCCGTTTGCGTTCCTCCCTCAGGTTTT ACGGCTGCTCACGGGAGAGCAACCGGGCGGCACGTATCGCCATCAACCCC GTGCAGAGCGCGCGGCTGCGGACGGCCGGCACGTTCTCGTTCCGCTATGG CCGCGTCGAAGTGCGGGCCAAGCTGCCGCGCGGCGACTGGCTCTGGCCCG GTGAGAGAGTGTGTCTATTCCCCACTCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16137:218..1546-

>mRNA_P-wetherbeei_contig16137.1.1 ID=mRNA_P-wetherbeei_contig16137.1.1|Name=mRNA_P-wetherbeei_contig16137.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig16137:218..1546- (Phaeothamnion wetherbeei SAG_119_79)
GACATTTGGAAACATGAAATTACCGCTGCGGGAGGCGGAAACTGGGAGTT
TCAGTATTATACCAACAACCGGTCAAACTCTTTCACGGAGGACGGCGTTC
TCTTCATCCAGCCGACGCTGACGGAGGATTTCATCGGTGCTGACGCCGTG
TCCGGGGAGAAGCCCTTCACGCTCGATTTATGGGGTGTCACACCTGCCTC
GCAGTGCACCATCAACATGTTTTACGGCTGCTCACGGGAGAGCAACCGGG
CGGCACGTATCGCCATCAACCCCGTGCAGAGCGCGCGGCTGCGGACGGCC
GGCACGTTCTCGTTCCGCTATGGCCGCGTCGAAGTGCGGGCCAAGCTGCC
GCGCGGCGACTGGCTCTGGCCCGGTGAGAGAGTGTGTCTATTCCCCACTC
AA
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