mRNA_P-wetherbeei_contig16132.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16132.1.1
Unique NamemRNA_P-wetherbeei_contig16132.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16132.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16132contigP-wetherbeei_contig16132:40..1248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog443598.AUFA01000048_gene900
PFAMsAsp_protease_2,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8
Model size1209
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.26e-05
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1QW7M@1224|Proteobacteria,2U1I6@28211|Alphaproteobacteria,3JS3H@41294|Bradyrhizobiaceae
DescriptionTPR repeat
Cds size1203
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.0051048-UTR-P-wetherbeei_contig16132:39..451683186078.0051048-UTR-P-wetherbeei_contig16132:39..45Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16132 40..45 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.0164526-CDS-P-wetherbeei_contig16132:45..12481683186078.0164526-CDS-P-wetherbeei_contig16132:45..1248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16132 46..1248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16132.1.1prot_P-wetherbeei_contig16132.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16132 46..1248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16132.1.1

>prot_P-wetherbeei_contig16132.1.1 ID=prot_P-wetherbeei_contig16132.1.1|Name=mRNA_P-wetherbeei_contig16132.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=401bp
MAAKGPCFVKEAAPDVLIAACTTVIDSGKEKSTILAQAYAARGEAYREQG
NHDEAIRDLDQAIKLDAKNGNAYYNRGLSHRAKGEFDSAIADYDLAIKHD
SKNASTIYNSRSHANYDKRDYEHAIGDLNQAIRLNPRYTLAIYNRAMAFR
AKGEPERAVPDFDAVLKVNPNDAFAYHNRGLAYRDLRDYDRAIRDFDQAV
KINANFIQAFNDRGLAYISKGETDRAIEDFDHAVLLNPKDPAAFNNRGLA
YRNKGETDAAINNYDQSIALNAEFALAYYNRGNAYYDKRDYDRAITDYNQ
AIRINPNYALAYYDRGVVYYDRHDYDRAVADLSQAIQLDPKDSLAYYNRG
LTFRAKGEMDRALADFDQAIKLDPKNPLPFYNRGLAYRDKGEQDKAIGDF
S
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mRNA from alignment at P-wetherbeei_contig16132:40..1248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16132.1.1 ID=mRNA_P-wetherbeei_contig16132.1.1|Name=mRNA_P-wetherbeei_contig16132.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1209bp|location=Sequence derived from alignment at P-wetherbeei_contig16132:40..1248+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGATGGCGGCCAAGGGGCCGTGCTTCGTCAAGGAAGCCGCGCCGGA
TGTGTTGATCGCGGCCTGCACCACGGTGATCGATTCCGGCAAGGAGAAGT
CTACTATTCTCGCGCAGGCCTATGCCGCGCGTGGCGAGGCCTATCGCGAG
CAGGGCAATCACGACGAAGCGATTCGCGATCTCGACCAGGCGATCAAGCT
CGACGCGAAGAACGGCAATGCCTACTACAACCGCGGCCTGTCGCACCGGG
CCAAAGGCGAGTTCGACAGCGCGATCGCCGACTACGATCTGGCGATCAAA
CACGATTCCAAGAACGCGTCGACCATCTACAACAGCCGCAGTCACGCCAA
CTACGACAAGCGCGACTACGAGCATGCGATTGGCGATTTGAATCAGGCGA
TCCGGCTCAACCCGCGCTACACGCTTGCGATCTACAATCGTGCTATGGCG
TTCCGCGCCAAGGGTGAGCCCGAGCGCGCGGTTCCCGATTTCGATGCCGT
ATTGAAGGTCAATCCGAACGACGCGTTCGCCTATCACAACCGCGGCCTGG
CCTACCGCGATCTGCGCGACTATGACCGCGCGATCCGCGATTTCGATCAG
GCTGTGAAGATCAACGCCAACTTCATCCAGGCGTTCAACGACCGCGGCCT
GGCCTACATCTCCAAGGGCGAGACCGACCGCGCCATCGAGGATTTCGATC
ACGCGGTTCTCCTGAATCCCAAGGATCCCGCGGCGTTCAACAACCGCGGC
CTAGCTTATCGCAACAAGGGCGAGACCGACGCCGCGATCAACAATTACGA
TCAGTCGATCGCACTCAACGCCGAGTTCGCGCTGGCCTATTACAATCGCG
GCAACGCCTATTACGACAAGCGCGACTACGACCGCGCCATCACCGACTAC
AACCAGGCGATCCGGATCAATCCGAACTACGCGCTGGCTTATTACGACCG
TGGCGTCGTCTATTACGACCGGCACGATTACGATCGCGCCGTCGCCGACC
TGAGTCAGGCGATCCAGCTCGATCCGAAGGATTCGCTGGCCTATTACAAT
CGTGGCCTGACGTTCCGGGCCAAGGGCGAGATGGATCGTGCTCTGGCCGA
CTTCGACCAGGCGATCAAGCTCGATCCCAAGAACCCGTTGCCGTTCTACA
ACCGCGGCCTCGCCTATCGCGACAAGGGCGAGCAGGACAAGGCGATCGGC
GACTTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16132:40..1248+

>mRNA_P-wetherbeei_contig16132.1.1 ID=mRNA_P-wetherbeei_contig16132.1.1|Name=mRNA_P-wetherbeei_contig16132.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig16132:40..1248+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCAAGGGGCCGTGCTTCGTCAAGGAAGCCGCGCCGGATGTGTT
GATCGCGGCCTGCACCACGGTGATCGATTCCGGCAAGGAGAAGTCTACTA
TTCTCGCGCAGGCCTATGCCGCGCGTGGCGAGGCCTATCGCGAGCAGGGC
AATCACGACGAAGCGATTCGCGATCTCGACCAGGCGATCAAGCTCGACGC
GAAGAACGGCAATGCCTACTACAACCGCGGCCTGTCGCACCGGGCCAAAG
GCGAGTTCGACAGCGCGATCGCCGACTACGATCTGGCGATCAAACACGAT
TCCAAGAACGCGTCGACCATCTACAACAGCCGCAGTCACGCCAACTACGA
CAAGCGCGACTACGAGCATGCGATTGGCGATTTGAATCAGGCGATCCGGC
TCAACCCGCGCTACACGCTTGCGATCTACAATCGTGCTATGGCGTTCCGC
GCCAAGGGTGAGCCCGAGCGCGCGGTTCCCGATTTCGATGCCGTATTGAA
GGTCAATCCGAACGACGCGTTCGCCTATCACAACCGCGGCCTGGCCTACC
GCGATCTGCGCGACTATGACCGCGCGATCCGCGATTTCGATCAGGCTGTG
AAGATCAACGCCAACTTCATCCAGGCGTTCAACGACCGCGGCCTGGCCTA
CATCTCCAAGGGCGAGACCGACCGCGCCATCGAGGATTTCGATCACGCGG
TTCTCCTGAATCCCAAGGATCCCGCGGCGTTCAACAACCGCGGCCTAGCT
TATCGCAACAAGGGCGAGACCGACGCCGCGATCAACAATTACGATCAGTC
GATCGCACTCAACGCCGAGTTCGCGCTGGCCTATTACAATCGCGGCAACG
CCTATTACGACAAGCGCGACTACGACCGCGCCATCACCGACTACAACCAG
GCGATCCGGATCAATCCGAACTACGCGCTGGCTTATTACGACCGTGGCGT
CGTCTATTACGACCGGCACGATTACGATCGCGCCGTCGCCGACCTGAGTC
AGGCGATCCAGCTCGATCCGAAGGATTCGCTGGCCTATTACAATCGTGGC
CTGACGTTCCGGGCCAAGGGCGAGATGGATCGTGCTCTGGCCGACTTCGA
CCAGGCGATCAAGCTCGATCCCAAGAACCCGTTGCCGTTCTACAACCGCG
GCCTCGCCTATCGCGACAAGGGCGAGCAGGACAAGGCGATCGGCGACTTC
AGC
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