mRNA_P-wetherbeei_contig16122.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16122.1.1
Unique NamemRNA_P-wetherbeei_contig16122.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16122.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16122contigP-wetherbeei_contig16122:80..1489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1410
Hectar predicted targeting categoryother localisation
Exons1
Cds size1383
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.8379736-CDS-P-wetherbeei_contig16122:79..14621683186077.8379736-CDS-P-wetherbeei_contig16122:79..1462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16122 80..1462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.8481333-UTR-P-wetherbeei_contig16122:1462..14891683186077.8481333-UTR-P-wetherbeei_contig16122:1462..1489Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16122 1463..1489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16122.1.1prot_P-wetherbeei_contig16122.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16122 80..1462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16122.1.1

>prot_P-wetherbeei_contig16122.1.1 ID=prot_P-wetherbeei_contig16122.1.1|Name=mRNA_P-wetherbeei_contig16122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=461bp
MPAVHSTSLRERLSRLNEKLRERDEEMEELRLELDRQGVNAKDAERLTRQ
LRESALKLEEVQGELQVSLERNQRFEASLKKARVMLGEQREQLQESQTHN
QELQQQLQDFDQTTELAADLQEQLEKAQEELAQTQARLEDEEALKRELAA
LRELLDRSRRRQAELEAALHQATYNDPLGDPPEAVEARIKAMAAQLADTQ
NQLDTTREELRSYLDSQADPNAQGQSHLLADLQRSQERSRRLEDKLRQAV
AALQQARQRLTQEEHTRVELENQLQEKDRSLSDLRSELEEQTEALEASWG
DISRLEDELHQSREGGSAQLAEELRKAAATLDGTRGELSAQQEQARHLQS
QLEKAAAQRDGLRDKLQEALQVARDQAAELQTFRGQHIGSQEEMREWEMR
ARKSQAKLAEAVQRLRDQGQSLKQSHATLQNWQDKAAQLEQSLDESRSAQ
TALEARYQSLQ
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mRNA from alignment at P-wetherbeei_contig16122:80..1489-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16122.1.1 ID=mRNA_P-wetherbeei_contig16122.1.1|Name=mRNA_P-wetherbeei_contig16122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1410bp|location=Sequence derived from alignment at P-wetherbeei_contig16122:80..1489- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAGCAGGATGAGACGCGCGAGGATATGCCCGCCGTTCACTCCACATC
GCTGCGTGAACGGCTTTCTCGGCTTAATGAGAAGCTGCGCGAGCGCGATG
AGGAGATGGAGGAGCTTCGTCTCGAGCTCGACCGCCAGGGCGTCAATGCC
AAAGACGCCGAGCGTCTCACGCGCCAATTGCGCGAGAGCGCCCTCAAGCT
CGAGGAGGTCCAGGGGGAGCTGCAGGTTTCCCTGGAGCGCAACCAGCGCT
TTGAGGCCAGCCTCAAGAAGGCACGCGTCATGCTCGGGGAGCAGCGCGAA
CAGCTGCAGGAGAGCCAGACCCACAACCAGGAGCTGCAGCAGCAGCTGCA
GGACTTTGATCAGACCACCGAGCTGGCCGCCGATTTGCAGGAGCAGCTGG
AGAAGGCGCAAGAGGAGCTCGCCCAAACGCAGGCTCGTCTCGAGGATGAG
GAGGCCCTCAAGCGGGAGCTGGCGGCCCTGCGCGAGTTGCTCGACCGCAG
CCGGCGCCGTCAGGCCGAACTGGAGGCCGCCCTCCATCAGGCCACCTATA
ACGATCCGCTTGGCGATCCTCCCGAGGCCGTTGAGGCCCGCATCAAGGCT
ATGGCGGCGCAGCTCGCCGACACCCAGAATCAGCTTGATACCACGCGTGA
GGAATTGCGCAGCTATCTCGATTCCCAGGCCGATCCCAACGCCCAGGGTC
AATCCCACCTGCTTGCCGATCTGCAGCGCTCCCAGGAGCGTAGTCGCAGA
CTTGAAGATAAGCTGCGTCAGGCTGTGGCAGCTTTGCAGCAGGCTCGCCA
GCGGCTGACCCAGGAAGAACACACGCGTGTAGAGCTTGAAAATCAGCTCC
AGGAGAAAGACCGCAGCCTCAGCGATCTGCGCAGCGAGCTCGAGGAGCAG
ACCGAGGCACTGGAGGCTTCATGGGGCGATATCAGCCGCCTCGAGGACGA
GCTGCATCAGTCCCGCGAGGGCGGTAGCGCTCAGCTCGCCGAGGAGCTGC
GCAAAGCTGCGGCCACTCTCGATGGCACGCGCGGGGAGCTCAGCGCTCAG
CAGGAGCAGGCCCGTCATCTTCAGTCCCAGCTGGAAAAGGCTGCGGCCCA
GCGCGATGGCCTGCGTGACAAGCTGCAAGAGGCGCTGCAGGTGGCCCGGG
ACCAGGCTGCCGAGCTGCAGACTTTCCGCGGCCAGCATATCGGGTCTCAG
GAAGAGATGCGCGAGTGGGAAATGCGTGCTCGCAAATCCCAGGCCAAACT
GGCGGAGGCTGTGCAGCGCCTGCGCGATCAGGGGCAGTCTCTCAAGCAGA
GCCACGCCACACTGCAGAATTGGCAAGACAAGGCCGCCCAGCTCGAGCAG
AGCCTGGATGAGTCGCGCAGCGCCCAGACGGCTCTGGAAGCTCGCTATCA
GTCGCTCCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16122:80..1489-

>mRNA_P-wetherbeei_contig16122.1.1 ID=mRNA_P-wetherbeei_contig16122.1.1|Name=mRNA_P-wetherbeei_contig16122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1383bp|location=Sequence derived from alignment at P-wetherbeei_contig16122:80..1489- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGCCGTTCACTCCACATCGCTGCGTGAACGGCTTTCTCGGCTTAA
TGAGAAGCTGCGCGAGCGCGATGAGGAGATGGAGGAGCTTCGTCTCGAGC
TCGACCGCCAGGGCGTCAATGCCAAAGACGCCGAGCGTCTCACGCGCCAA
TTGCGCGAGAGCGCCCTCAAGCTCGAGGAGGTCCAGGGGGAGCTGCAGGT
TTCCCTGGAGCGCAACCAGCGCTTTGAGGCCAGCCTCAAGAAGGCACGCG
TCATGCTCGGGGAGCAGCGCGAACAGCTGCAGGAGAGCCAGACCCACAAC
CAGGAGCTGCAGCAGCAGCTGCAGGACTTTGATCAGACCACCGAGCTGGC
CGCCGATTTGCAGGAGCAGCTGGAGAAGGCGCAAGAGGAGCTCGCCCAAA
CGCAGGCTCGTCTCGAGGATGAGGAGGCCCTCAAGCGGGAGCTGGCGGCC
CTGCGCGAGTTGCTCGACCGCAGCCGGCGCCGTCAGGCCGAACTGGAGGC
CGCCCTCCATCAGGCCACCTATAACGATCCGCTTGGCGATCCTCCCGAGG
CCGTTGAGGCCCGCATCAAGGCTATGGCGGCGCAGCTCGCCGACACCCAG
AATCAGCTTGATACCACGCGTGAGGAATTGCGCAGCTATCTCGATTCCCA
GGCCGATCCCAACGCCCAGGGTCAATCCCACCTGCTTGCCGATCTGCAGC
GCTCCCAGGAGCGTAGTCGCAGACTTGAAGATAAGCTGCGTCAGGCTGTG
GCAGCTTTGCAGCAGGCTCGCCAGCGGCTGACCCAGGAAGAACACACGCG
TGTAGAGCTTGAAAATCAGCTCCAGGAGAAAGACCGCAGCCTCAGCGATC
TGCGCAGCGAGCTCGAGGAGCAGACCGAGGCACTGGAGGCTTCATGGGGC
GATATCAGCCGCCTCGAGGACGAGCTGCATCAGTCCCGCGAGGGCGGTAG
CGCTCAGCTCGCCGAGGAGCTGCGCAAAGCTGCGGCCACTCTCGATGGCA
CGCGCGGGGAGCTCAGCGCTCAGCAGGAGCAGGCCCGTCATCTTCAGTCC
CAGCTGGAAAAGGCTGCGGCCCAGCGCGATGGCCTGCGTGACAAGCTGCA
AGAGGCGCTGCAGGTGGCCCGGGACCAGGCTGCCGAGCTGCAGACTTTCC
GCGGCCAGCATATCGGGTCTCAGGAAGAGATGCGCGAGTGGGAAATGCGT
GCTCGCAAATCCCAGGCCAAACTGGCGGAGGCTGTGCAGCGCCTGCGCGA
TCAGGGGCAGTCTCTCAAGCAGAGCCACGCCACACTGCAGAATTGGCAAG
ACAAGGCCGCCCAGCTCGAGCAGAGCCTGGATGAGTCGCGCAGCGCCCAG
ACGGCTCTGGAAGCTCGCTATCAGTCGCTCCAA
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