mRNA_P-wetherbeei_contig16120.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16120.1.1
Unique NamemRNA_P-wetherbeei_contig16120.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16120.1.1 vs. uniprot
Match: D8LJ92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ92_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.410e-14
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 DGCGRGPLLHEARQRRRLESTTATTARTIQITPDILTGILFLLLFLFLLLSGFSCLNEIEYPKTFVHSGPPAGREY 228
            + CGR  L  E+R  RRL + + T  RTI+ITPDIL G+L LLLFLF+L++G  C+ +IE PK+F    P  GREY
Sbjct:  224 EACGRRSLKAESRAHRRLATESLT--RTIKITPDILAGLLTLLLFLFILVTGLGCVGDIECPKSFSSEDPAKGREY 297
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BLAST of mRNA_P-wetherbeei_contig16120.1.1 vs. uniprot
Match: K3WAS8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAS8_GLOUD)

HSP 1 Score: 50.4 bits (119), Expect = 2.100e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   85 IQITPDILTGILFLLLFLFLLLSGFSCLNEIEYPKTFVHSGPPAGREY 228
            + +TP++LTG+LF L F+FL   G S L+ I+ P  + H GPP G+E+
Sbjct:  251 VHMTPEVLTGVLFGLFFIFLAYIGLSALSAIQTPTRYPHHGPPRGKEF 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16120.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ92_ECTSI4.410e-1452.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K3WAS8_GLOUD2.100e-545.83Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16120contigP-wetherbeei_contig16120:1286..1516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65071.PYU1_T002069
Model size231
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.44e-06
EggNOG OGs2BGC2@1|root,2S193@2759|Eukaryota,1MDNM@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005230.1
Descriptionfunction. Source PGD
Cds size231
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.799049-CDS-P-wetherbeei_contig16120:1285..15161683186077.799049-CDS-P-wetherbeei_contig16120:1285..1516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16120 1286..1516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16120.1.1prot_P-wetherbeei_contig16120.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16120 1286..1516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16120.1.1

>prot_P-wetherbeei_contig16120.1.1 ID=prot_P-wetherbeei_contig16120.1.1|Name=mRNA_P-wetherbeei_contig16120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
DGCGRGPLLHEARQRRRLESTTATTARTIQITPDILTGILFLLLFLFLLL
SGFSCLNEIEYPKTFVHSGPPAGREY*
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mRNA from alignment at P-wetherbeei_contig16120:1286..1516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16120.1.1 ID=mRNA_P-wetherbeei_contig16120.1.1|Name=mRNA_P-wetherbeei_contig16120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig16120:1286..1516+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCTGCGGACGCGGGCCACTCCTGCATGAGGCGCGGCAGCGGCGCCG
GCTCGAGTCGACGACGGCGACGACGGCCCGGACGATCCAGATCACGCCCG
ACATCCTGACGGGCATCCTATTCCTGCTACTCTTCCTCTTCCTGCTGCTG
TCGGGCTTCAGCTGCCTCAACGAGATCGAGTACCCCAAGACCTTCGTCCA
TTCGGGCCCGCCCGCCGGCCGGGAGTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16120:1286..1516+

>mRNA_P-wetherbeei_contig16120.1.1 ID=mRNA_P-wetherbeei_contig16120.1.1|Name=mRNA_P-wetherbeei_contig16120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig16120:1286..1516+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCTGCGGACGCGGGCCACTCCTGCATGAGGCGCGGCAGCGGCGCCG
GCTCGAGTCGACGACGGCGACGACGGCCCGGACGATCCAGATCACGCCCG
ACATCCTGACGGGCATCCTATTCCTGCTACTCTTCCTCTTCCTGCTGCTG
TCGGGCTTCAGCTGCCTCAACGAGATCGAGTACCCCAAGACCTTCGTCCA
TTCGGGCCCGCCCGCCGGCCGGGAGTACTGA
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