mRNA_P-wetherbeei_contig16118.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16118.1.1
Unique NamemRNA_P-wetherbeei_contig16118.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: A0A7X9AFM0_9BURK (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFM0_9BURK)

HSP 1 Score: 381 bits (979), Expect = 2.880e-128
Identity = 181/264 (68.56%), Postives = 224/264 (84.85%), Query Frame = 1
Query:    1 RFRPFVGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIP 792
            RFRP+VG YAQGTH+V+KV++CAIQ  LNN+VL AARE +E++QWPVY EK+GTGLVRYLV R+S   ++ +LVVV++QPRLPQVQEF++ VR+RV  L GV LNLNPH++NV+LG R QLLWG DHLVEEV GLKF ISP+SFFQVN  GL+AIYD++D Y D K +D +LD YCGVGSL+LHLARKA+RVVG++ +Q AIEDAVINSDLN+L NTDF+AG+VE+ L  +Y++G RFQ  V+DPPRKGCDP VL+TL +MRIP
Sbjct:  152 RFRPYVGFYAQGTHKVVKVEDCAIQGVLNNQVLVAAREALERLQWPVYDEKEGTGLVRYLVVRSSRKAQEAILVVVSAQPRLPQVQEFVDMVRKRVRGLRGVLLNLNPHRSNVILGTRNQLLWGADHLVEEVRGLKFHISPSSFFQVNIGGLEAIYDVMDEYLDPKPRDIILDAYCGVGSLALHLARKAKRVVGIDETQSAIEDAVINSDLNDLANTDFMAGTVERILPGMYQKGVRFQSAVLDPPRKGCDPVVLDTLVKMRIP 415          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: A0A355TNL1_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (Fragment) n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TNL1_9BACT)

HSP 1 Score: 306 bits (784), Expect = 6.930e-99
Identity = 143/252 (56.75%), Postives = 191/252 (75.79%), Query Frame = 1
Query:    1 RFRPFVGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGH------RFQVCVIDPP 738
            RF P+VG YA+GTH +++V+ CAIQ ++NN+++ A RE +E++QWPVY+ +DG+G +RYLV R  Y + QTLLV+V+SQPRLP+V+EF++ VR+RV SL GV LNLNPH+TNV+LG R  +LWG DH+VEEV GLKF IS  SFFQVN  GL+ IY  LD +  ++ +D +LD YCGVGSL+L++AR+A+RV G++  QEAIEDAV+NSDLN L NT F+ G+VEK L  L  +G        F   V+DPP
Sbjct:  157 RFHPYVGYYAKGTHSIVRVENCAIQHEVNNELMNACREAIERLQWPVYNSEDGSGAIRYLVARHGYYSNQTLLVIVSSQPRLPKVREFVDIVRKRVRSLCGVVLNLNPHRTNVILGTRNSVLWGSDHIVEEVAGLKFNISANSFFQVNIEGLETIYSQLDQFLQIQPRDTILDAYCGVGSLALYMARQAKRVFGIDECQEAIEDAVVNSDLNGLTNTTFMDGTVEKVLPGLCSKGSLLQRRTSFSAAVLDPP 408          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: F7NF07_9FIRM (RNA methyltransferase, TrmA family protein n=1 Tax=Acetonema longum DSM 6540 TaxID=1009370 RepID=F7NF07_9FIRM)

HSP 1 Score: 303 bits (776), Expect = 6.590e-97
Identity = 144/312 (46.15%), Postives = 207/312 (66.35%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLSLKSTA 951
            +G YAQGTH VI  + C IQ   NN++  A R  +E +Q PVY E    GL+R+++ R   +T + + V+V ++P+LPQ +E +N +RQ +P LV +  N+NP QTNV+LG   + LWGK+ +++ +G   F IS  SFFQVNT+  + +Y+    YA +  ++ VLD+YCG G+++L LA+ +++V G+E+ + AI DA  N+  N + NT+F+ G     +  L RQG R +V V+DPPR GC+  VLET ARM+  ++VYVSCNP+SLARDL +LA  GY   EIQP+DMFPQT+HVEC   L  K  A
Sbjct:  149 IGCYAQGTHTVIDSEHCQIQHLTNNRIAAAVRGILEDLQLPVYDETRQIGLIRHVLGRVGTATGEVMAVIVTARPQLPQAEEIVNRLRQAIPGLVSIIQNINPRQTNVILGETNKTLWGKNTIIDRLGDFSFNISARSFFQVNTKQAEVLYNQAVQYAGLTGRETVLDVYCGTGTITLFLAKHSKKVYGIEVVEPAILDARQNAKENGVTNTEFITGDANVVIPRLSRQGIRPEVIVVDPPRAGCERSVLETFARMQPDRMVYVSCNPASLARDLAVLAEHGYPAKEIQPVDMFPQTYHVECTVWLKRKHIA 460          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: UPI001FEC3A36 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Pelorhabdus rhamnosifermentans TaxID=2772457 RepID=UPI001FEC3A36)

HSP 1 Score: 299 bits (766), Expect = 9.480e-96
Identity = 138/309 (44.66%), Postives = 205/309 (66.34%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLSLK 942
            VG YA G+H ++ +D C IQ +LNN++       M  +    Y E    G++RY++ R   +T + ++V+V +  +LP+ Q+ +  + +++P++  +  N+N  QTNV+LG + Q++WG DH+ + +G L FQISP SFFQVNT   Q +Y     YA +   + V+D YCG G++SL LAR+A++V G+EI ++AI DA+ N++ N + N +F+AG   K +  LYR+G +  V V+DPPR GC   VLET A MR  ++VYVSC+ +SLARDL +L  LGY T EIQP+DMFPQTFHVECVA ++ K
Sbjct:  129 VGCYAMGSHEIVPIDNCLIQHELNNRIAAVLPTIMRGLDLSAYDEVSHQGVLRYIMGRVGVATGKVMIVIVTATDKLPKQQQIVERIIEKIPAVTSIIHNVNQAQTNVMLGRKNQVIWGSDHITDRLGDLAFQISPHSFFQVNTLQAQVLYGQALKYASLTGNETVIDAYCGTGTISLFLARQAKKVYGIEIVEQAISDAMDNAEANHITNAEFIAGDATKVMPKLYRKGIKPDVIVVDPPRAGCSVAVLETFAAMRPERIVYVSCSAASLARDLALLDELGYKTKEIQPVDMFPQTFHVECVALIARK 437          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: A0A1Y3QGG7_9FIRM (23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Firmicutes bacterium ZCTH02-B6 TaxID=1861639 RepID=A0A1Y3QGG7_9FIRM)

HSP 1 Score: 299 bits (766), Expect = 1.870e-95
Identity = 144/307 (46.91%), Postives = 207/307 (67.43%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLS 936
            +G +A+GTH +++ ++C IQD LN +V   AR  + +   P Y E  G G++R++V R+S + +  ++V+V + P LPQ    +  +    P +V V  N+NP +TNV+ G  T++LWG+ HL EE+G ++F ISP SFFQVN+  +  +Y+ + L A +  ++ VLD YCGVG+++L+LA +A  VVG+E   EA+EDA  N+  N ++N  F+ G VE+ L  L  QG RF V V+DPPRKGC+P VLE LA   +P++VYVSC+P SLARDL  LA LGY   ++QP+DMFP T HVECVARLS
Sbjct:  157 MGFFARGTHEIVEAEDCLIQDPLNVEVALLARRLLAEAGVPAYDETTGRGVIRHVVVRSSRARRTAMVVLVTNGPELPQRDTIVAGLAAH-PQVVSVAQNVNPRRTNVIFGEETRILWGEPHLEEEIGHVRFLISPRSFFQVNSEQVGVLYEQVRLDAGLSGREQVLDAYCGVGTIALYLAAQAAHVVGIESVPEAVEDARRNAGHNRIENAAFIVGRVEEALPGLIEQGRRFDVAVLDPPRKGCEPPVLEALAAAGVPRIVYVSCHPESLARDLARLAALGYRIEQVQPVDMFPMTTHVECVARLS 462          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: A0A239TSG8_9FIRM (23S rRNA (Uracil-C(5))-methyltransferase RlmCD n=17 Tax=Selenomonadaceae TaxID=1843491 RepID=A0A239TSG8_9FIRM)

HSP 1 Score: 299 bits (765), Expect = 2.220e-95
Identity = 143/309 (46.28%), Postives = 205/309 (66.34%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLSLK 942
            VG YA  +H +I  + C IQ   NN +  A RE   K +  VY EK   GL+R++V R +    Q ++V+V +QP++P+V+E +N++R ++P+L  +  N+N  + N+++G   ++LWG  H+ + +G LKF+IS  SFFQVNT   + +Y+    YA++  K+ V+D YCG G++SL LA+KA++V G+EI  EAI DA+ N+  N +KN +FL G   K +  LYR+G R  V V DPPR GC PEVL+T A M+  ++VYVSCNP+SLARD+ IL  LGY   EIQP+DMFPQT HVE V  L+ K
Sbjct:  149 VGCYAHSSHNIINTEMCHIQKHTNNVIANAVREMATKFKLSVYDEKTHYGLLRHVVGRTNRDETQAMVVLVTAQPKIPRVREIVNFLRSKIPNLTSIVQNINTGRNNIIMGKECKILWGSSHITDRLGSLKFKISALSFFQVNTEQAEKLYECALKYANLTGKETVIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAIANARDNNIKNAEFLTGDAAKLMPQLYRKGLRPDVIVTDPPRAGCAPEVLKTFAAMQPKRIVYVSCNPASLARDIAILDELGYKALEIQPVDMFPQTGHVETVVLLNKK 457          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: I9DF56_9FIRM (RNA methyltransferase, TrmA family n=4 Tax=Pelosinus TaxID=365348 RepID=I9DF56_9FIRM)

HSP 1 Score: 296 bits (757), Expect = 3.760e-94
Identity = 138/310 (44.52%), Postives = 209/310 (67.42%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLSLKS 945
            +G +AQGTH +I  + C IQ + NN V QA +E + ++    Y E+ G G++R+++ R   +T + ++V+V + P LP  +  + ++RQRVP+LV V  N+N ++TNV+LGNRT+ LWG++++ + +G   F IS  SFFQVNT+  + +Y+    YA +  ++ V+D YCG G+++L LAR A++V G+EI   AI DA  N+ +N++ N +F+ G    ++  ++++G R QV V+DPPR GCD  VLET A M+  ++VYVSCNPSSLARDL +L  LGY T EIQPIDMF  T+HVE +  L  K+
Sbjct:  149 IGCFAQGTHNIINTEHCYIQHEANNLVAQALQEIVTELGISTYDERTGRGIMRHVLGRVGTATDEVMVVLVTATPELPHRERIIAHLRQRVPNLVSVIQNINSNKTNVILGNRTRTLWGENYITDTLGEFTFHISARSFFQVNTKQAEVLYNKAVEYAGLSGEETVIDAYCGTGTITLFLARHAKKVYGIEIVAPAIRDAQHNAQMNQISNVEFIVGDAIDSMPKMFKEGIRPQVIVVDPPRAGCDKLVLETFAAMQAKRIVYVSCNPSSLARDLALLEELGYKTQEIQPIDMFSHTYHVETIVLLQKKN 458          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: UPI00028975E6 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Clostridium arbusti TaxID=1137848 RepID=UPI00028975E6)

HSP 1 Score: 296 bits (759), Expect = 3.770e-94
Identity = 135/309 (43.69%), Postives = 208/309 (67.31%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLSLK 942
            VG Y+  +H +I ++EC IQ ++ +KV+   ++ ++K   P+Y EK G GLVR+++ R ++ T++T++V+V S+  +P  +EF+N + + +  LV +  N+N   TNV+LG + + LWGK  +V+ +G  KF ISP SFFQVN    + +Y+    YA+++  + V D YCG G++SL L++KA++V GVEI  EAIE+A IN+  N++ N +F+ G  EK +  +   G +  V ++DPPRKGC+  +LE +A+M   K+VYVSC+P +LARDL IL  LGY T E+QP+DMFP T HVECV R+  K
Sbjct:  175 VGFYSPRSHDIIDMEECYIQHEVGDKVVAIIKQWLKKYNIPIYDEKTGAGLVRHIMVRKAFKTEETMIVLVTSKENIPHEEEFINLMSKNIDGLVSIVQNINTKNTNVILGLKCKTLWGKSDIVDNIGDFKFNISPLSFFQVNPVQTEILYNKALEYANLQGNEIVFDAYCGTGTISLFLSQKAKKVYGVEIIPEAIENAKINAKQNDIDNVEFMVGDAEKVIPEIINSGVKADVVIVDPPRKGCEKSLLEAMAKMNPEKIVYVSCDPGTLARDLSILDNLGYKTLEVQPVDMFPMTGHVECVVRIVKK 483          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: A0A1H8T6X5_9FIRM (23S rRNA (Uracil1939-C5)-methyltransferase n=2 Tax=Propionispora TaxID=112902 RepID=A0A1H8T6X5_9FIRM)

HSP 1 Score: 296 bits (757), Expect = 4.100e-94
Identity = 138/308 (44.81%), Postives = 200/308 (64.94%), Query Frame = 1
Query:   19 GLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARLSLK 942
            G +AQGTH +I   EC IQ   NN +LQ  +  + +    VY E  GTGLVR+++ R   +T + ++V+V +   LP  ++ ++ ++ R+P LV V  N+N  +TNV++G  TQ LWG+D + + +G   F IS  SFFQVNT     +Y+    YAD+  ++ V+D YCG G++SL LA+KA++V G+EI + AI DA +N++ N+++N +F+ G     L  L+++G R  V V+DPPR GCD +VLET   M+  ++VYVSCNPSSLARDL +    GY T E+QP+DMFPQTFHVEC   L  K
Sbjct:  152 GCFAQGTHTIIPTTECTIQHQANNVILQEVQAALHEFGISVYDENTGTGLVRHVLGRVGVATGEVMVVLVTAAKHLPHKEQIIDRLKNRIPGLVSVIQNVNGRKTNVIMGEETQTLWGRDTITDRLGDCSFAISARSFFQVNTTQAAVLYEKALEYADLSGQEVVIDAYCGTGTISLFLAQKAKKVYGIEIVEPAIRDARLNAERNQVENAEFIVGDAVDVLPRLFKEGLRPDVIVVDPPRAGCDRQVLETFVNMKPQRIVYVSCNPSSLARDLAVFNEQGYETREVQPVDMFPQTFHVECCVWLKRK 459          
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Match: K0B312_GOTA9 (23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 / NCIMB 10678 / 9a) TaxID=1128398 RepID=K0B312_GOTA9)

HSP 1 Score: 294 bits (752), Expect = 1.890e-93
Identity = 129/306 (42.16%), Postives = 211/306 (68.95%), Query Frame = 1
Query:   16 VGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSEKDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLVGVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTRGLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQEAIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGCDPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFPQTFHVECVARL 933
            +G Y + +H ++  DEC IQ +L+ K +   RE M+K     Y+ K   G +R+++T+ S+ TK T++++V +  RLP  +E ++ +++ +PS+  +  N+N ++TN+VLG++ ++L+G + +++ +G LKF ISP SFFQ+N+   + +Y     YAD+K K+ V D+YCG+G++SL LA+KA++V G+E+  EAIEDA  N++LN ++N +F  G+ E  L  LY++G +  V V+DPPRKGC+ EVL+T+  M+  ++VYVSCNPS+LARDL  L+  G+   E+QP+D+F  + HVECV  L
Sbjct:  142 IGFYKKESHNIVDTDECIIQHELSEKAINIVREFMKKFNVSGYNRKTAEGNIRHVITKVSFKTKDTMIIIVTNTKRLPYYEELIDMLKKEIPSVKSIVQNINKNKTNLVLGDKNKVLYGDEKIIDYIGALKFNISPQSFFQINSIQTEILYKKALEYADLKGKETVYDIYCGIGTISLFLAQKAKKVYGIEVISEAIEDAKENAELNGIENVEFYEGTAETVLPELYKEGIKADVIVLDPPRKGCEKEVLDTIVSMKPERVVYVSCNPSTLARDLNYLSNKGFLVKEVQPVDVFAGSMHVECVVLL 447          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16118.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AFM0_9BURK2.880e-12868.5623S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A355TNL1_9BACT6.930e-9956.7523S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
F7NF07_9FIRM6.590e-9746.15RNA methyltransferase, TrmA family protein n=1 Tax... [more]
UPI001FEC3A369.480e-9644.6623S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A1Y3QGG7_9FIRM1.870e-9546.9123S rRNA (Uracil-5-)-methyltransferase RumA n=1 Ta... [more]
A0A239TSG8_9FIRM2.220e-9546.2823S rRNA (Uracil-C(5))-methyltransferase RlmCD n=1... [more]
I9DF56_9FIRM3.760e-9444.52RNA methyltransferase, TrmA family n=4 Tax=Pelosin... [more]
UPI00028975E63.770e-9443.6923S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A1H8T6X5_9FIRM4.100e-9444.8123S rRNA (Uracil1939-C5)-methyltransferase n=2 Tax... [more]
K0B312_GOTA91.890e-9342.1623S rRNA (Uracil-5-)-methyltransferase RumA n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16118contigP-wetherbeei_contig16118:492..1463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1009370.ALO_03121
Preferred namerumA
PFAMsTRAM,tRNA_U5-meth_tr
Model size972
Max annot lvl909932|Negativicutes
KEGG koko:K03215
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-97
EggNOG OGsCOG2265@1|root,COG2265@2|Bacteria,1TP4H@1239|Firmicutes,4H2QM@909932|Negativicutes
EC2.1.1.190
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Cds size972
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.5680127-CDS-P-wetherbeei_contig16118:491..14631683186077.5680127-CDS-P-wetherbeei_contig16118:491..1463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16118 492..1463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16118.1.1prot_P-wetherbeei_contig16118.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16118 492..1463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16118.1.1

>prot_P-wetherbeei_contig16118.1.1 ID=prot_P-wetherbeei_contig16118.1.1|Name=mRNA_P-wetherbeei_contig16118.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
RFRPFVGLYAQGTHRVIKVDECAIQDDLNNKVLQAAREGMEKMQWPVYSE
KDGTGLVRYLVTRASYSTKQTLLVVVASQPRLPQVQEFLNYVRQRVPSLV
GVFLNLNPHQTNVVLGNRTQLLWGKDHLVEEVGGLKFQISPTSFFQVNTR
GLQAIYDMLDLYADVKSKDAVLDLYCGVGSLSLHLARKARRVVGVEISQE
AIEDAVINSDLNELKNTDFLAGSVEKTLQSLYRQGHRFQVCVIDPPRKGC
DPEVLETLARMRIPKLVYVSCNPSSLARDLEILAGLGYTTHEIQPIDMFP
QTFHVECVARLSLKSTAHGAEKA*
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mRNA from alignment at P-wetherbeei_contig16118:492..1463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16118.1.1 ID=mRNA_P-wetherbeei_contig16118.1.1|Name=mRNA_P-wetherbeei_contig16118.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig16118:492..1463- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCCGCCCTTTCGTCGGCCTCTATGCGCAGGGCACCCACCGCGTGAT CAAGGTCGACGAGTGCGCCATCCAGGACGATCTCAACAATAAGGTCCTTC AGGCTGCCCGCGAGGGCATGGAAAAAATGCAATGGCCGGTTTATTCGGAA AAGGACGGCACGGGGCTAGTCCGCTATCTGGTCACCCGTGCCAGCTATTC GACCAAGCAGACTTTGCTTGTCGTGGTTGCATCACAGCCCCGTTTGCCTC AGGTTCAAGAGTTTCTCAATTATGTACGCCAGCGTGTGCCCTCGCTGGTA GGCGTGTTCCTTAATCTCAACCCTCATCAGACCAACGTCGTCCTGGGCAA TCGCACCCAGCTTCTTTGGGGTAAGGACCACCTTGTCGAGGAAGTCGGCG GGCTCAAGTTCCAAATCAGCCCCACGTCTTTCTTCCAGGTGAATACTCGT GGACTGCAGGCCATCTACGACATGCTCGACCTCTATGCTGACGTTAAGAG TAAGGACGCGGTCCTCGATCTGTATTGCGGCGTGGGTTCGTTGAGTCTGC ATCTGGCTCGCAAAGCTCGTCGGGTGGTGGGCGTCGAGATTTCCCAGGAA GCCATCGAAGATGCGGTCATCAATTCCGATCTCAATGAGCTGAAGAATAC CGATTTTCTGGCCGGCAGCGTGGAAAAGACTTTGCAGTCGCTCTATCGCC AGGGCCACCGCTTTCAGGTGTGCGTCATCGACCCGCCGCGCAAAGGTTGC GATCCCGAGGTTCTTGAGACGCTGGCGCGAATGCGCATCCCCAAGCTGGT CTATGTCTCGTGCAACCCCTCGTCGCTGGCCCGCGATCTCGAGATTTTGG CCGGCCTAGGTTACACGACGCACGAAATCCAGCCCATCGATATGTTCCCC CAAACTTTCCATGTAGAGTGTGTGGCTCGCCTTTCTCTCAAGTCCACCGC TCACGGCGCGGAAAAAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16118:492..1463-

>mRNA_P-wetherbeei_contig16118.1.1 ID=mRNA_P-wetherbeei_contig16118.1.1|Name=mRNA_P-wetherbeei_contig16118.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig16118:492..1463- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCCGCCCTTTCGTCGGCCTCTATGCGCAGGGCACCCACCGCGTGAT
CAAGGTCGACGAGTGCGCCATCCAGGACGATCTCAACAATAAGGTCCTTC
AGGCTGCCCGCGAGGGCATGGAAAAAATGCAATGGCCGGTTTATTCGGAA
AAGGACGGCACGGGGCTAGTCCGCTATCTGGTCACCCGTGCCAGCTATTC
GACCAAGCAGACTTTGCTTGTCGTGGTTGCATCACAGCCCCGTTTGCCTC
AGGTTCAAGAGTTTCTCAATTATGTACGCCAGCGTGTGCCCTCGCTGGTA
GGCGTGTTCCTTAATCTCAACCCTCATCAGACCAACGTCGTCCTGGGCAA
TCGCACCCAGCTTCTTTGGGGTAAGGACCACCTTGTCGAGGAAGTCGGCG
GGCTCAAGTTCCAAATCAGCCCCACGTCTTTCTTCCAGGTGAATACTCGT
GGACTGCAGGCCATCTACGACATGCTCGACCTCTATGCTGACGTTAAGAG
TAAGGACGCGGTCCTCGATCTGTATTGCGGCGTGGGTTCGTTGAGTCTGC
ATCTGGCTCGCAAAGCTCGTCGGGTGGTGGGCGTCGAGATTTCCCAGGAA
GCCATCGAAGATGCGGTCATCAATTCCGATCTCAATGAGCTGAAGAATAC
CGATTTTCTGGCCGGCAGCGTGGAAAAGACTTTGCAGTCGCTCTATCGCC
AGGGCCACCGCTTTCAGGTGTGCGTCATCGACCCGCCGCGCAAAGGTTGC
GATCCCGAGGTTCTTGAGACGCTGGCGCGAATGCGCATCCCCAAGCTGGT
CTATGTCTCGTGCAACCCCTCGTCGCTGGCCCGCGATCTCGAGATTTTGG
CCGGCCTAGGTTACACGACGCACGAAATCCAGCCCATCGATATGTTCCCC
CAAACTTTCCATGTAGAGTGTGTGGCTCGCCTTTCTCTCAAGTCCACCGC
TCACGGCGCGGAAAAAGCCTGA
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