mRNA_P-wetherbeei_contig16111.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16111.1.1
Unique NamemRNA_P-wetherbeei_contig16111.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16111.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16111contigP-wetherbeei_contig16111:331..924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.475487-UTR-P-wetherbeei_contig16111:330..4761683186077.475487-UTR-P-wetherbeei_contig16111:330..476Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16111 331..476 -
1683186077.4935172-UTR-P-wetherbeei_contig16111:920..9241683186077.4935172-UTR-P-wetherbeei_contig16111:920..924Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16111 921..924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.4840863-CDS-P-wetherbeei_contig16111:476..9201683186077.4840863-CDS-P-wetherbeei_contig16111:476..920Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16111 477..920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16111.1.1prot_P-wetherbeei_contig16111.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16111 477..920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16111.1.1

>prot_P-wetherbeei_contig16111.1.1 ID=prot_P-wetherbeei_contig16111.1.1|Name=mRNA_P-wetherbeei_contig16111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MPGRAARAAAARAAAEATVAEAAAAALAAAAAALPATGEAGWAAGSAFGG
AIEEAGPPLPALPAAVVAGGCEGSRDEDSGGDDGGGSGGGNGGGGGGSGA
GSNVALVRGNTQIGGHANAPGDDAAAAGMEAAATAAADANVQTPRLA*
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mRNA from alignment at P-wetherbeei_contig16111:331..924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16111.1.1 ID=mRNA_P-wetherbeei_contig16111.1.1|Name=mRNA_P-wetherbeei_contig16111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig16111:331..924- (Phaeothamnion wetherbeei SAG_119_79)
GTTCATGCCCGGCCGCGCCGCCCGCGCGGCGGCGGCACGAGCAGCCGCAG
AGGCCACCGTCGCGGAGGCAGCCGCAGCCGCCCTTGCGGCTGCGGCTGCT
GCTCTCCCGGCCACGGGGGAAGCCGGTTGGGCGGCTGGAAGCGCATTTGG
CGGAGCGATCGAGGAAGCGGGGCCTCCGCTGCCGGCGCTGCCTGCAGCCG
TGGTTGCCGGTGGCTGTGAAGGGTCACGCGACGAGGACAGCGGTGGAGAC
GACGGCGGGGGAAGCGGCGGCGGCAACGGCGGCGGCGGCGGCGGCAGCGG
CGCCGGCAGCAACGTGGCCCTGGTTAGGGGGAACACACAGATTGGCGGGC
ATGCGAACGCGCCAGGTGACGACGCCGCAGCCGCCGGCATGGAGGCGGCG
GCGACGGCGGCGGCAGACGCGAATGTTCAAACGCCTCGGCTGGCCTGAGC
GGTGAAGGCTGCCTGACGATACGTTCTCGGCTGAAGAATTGGAAATTTCT
TCCCATTATCTCGAAGCAGGGCACGATTAAGGGGAGCAATAACTGTATAT
AGCTGGATGCCGACATTCGGTCCCGATGATTAATATACTGTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16111:331..924-

>mRNA_P-wetherbeei_contig16111.1.1 ID=mRNA_P-wetherbeei_contig16111.1.1|Name=mRNA_P-wetherbeei_contig16111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig16111:331..924- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGGCCGCGCCGCCCGCGCGGCGGCGGCACGAGCAGCCGCAGAGGC
CACCGTCGCGGAGGCAGCCGCAGCCGCCCTTGCGGCTGCGGCTGCTGCTC
TCCCGGCCACGGGGGAAGCCGGTTGGGCGGCTGGAAGCGCATTTGGCGGA
GCGATCGAGGAAGCGGGGCCTCCGCTGCCGGCGCTGCCTGCAGCCGTGGT
TGCCGGTGGCTGTGAAGGGTCACGCGACGAGGACAGCGGTGGAGACGACG
GCGGGGGAAGCGGCGGCGGCAACGGCGGCGGCGGCGGCGGCAGCGGCGCC
GGCAGCAACGTGGCCCTGGTTAGGGGGAACACACAGATTGGCGGGCATGC
GAACGCGCCAGGTGACGACGCCGCAGCCGCCGGCATGGAGGCGGCGGCGA
CGGCGGCGGCAGACGCGAATGTTCAAACGCCTCGGCTGGCCTGA
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