mRNA_P-wetherbeei_contig1611.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1611.1.1
Unique NamemRNA_P-wetherbeei_contig1611.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1611.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1611contigP-wetherbeei_contig1611:953..3715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2763
Hectar predicted targeting categoryother localisation
Exons1
Cds size1434
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.4241555-UTR-P-wetherbeei_contig1611:952..10221683186077.4241555-UTR-P-wetherbeei_contig1611:952..1022Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1611 953..1022 +
1683186077.4460394-UTR-P-wetherbeei_contig1611:2456..37151683186077.4460394-UTR-P-wetherbeei_contig1611:2456..3715Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1611 2457..3715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.4338448-CDS-P-wetherbeei_contig1611:1022..24561683186077.4338448-CDS-P-wetherbeei_contig1611:1022..2456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1611 1023..2456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1611.1.1prot_P-wetherbeei_contig1611.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1611 1023..2456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1611.1.1

>prot_P-wetherbeei_contig1611.1.1 ID=prot_P-wetherbeei_contig1611.1.1|Name=mRNA_P-wetherbeei_contig1611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=478bp
MAPAAAATAAAARPLARTAIYEPATPHSAVNGGCDIGGSEDWDRPRSRTQ
SGLVGQARSVPTAGSGSGGVGRGSGSDGRYQPLQAPPPVQASPRCTCACT
CGNHGSAGEGQNAAAGGGGDGNGRNSAGPPSPAGSIGSTGSGIVQRFFEP
LTRRRGASWLLSRFARKDGSTGSCSGPGSPARNSPSRSNPRGSMRHCSSD
GGIAAAAGNAGASGSANATPRWSRLRPTSQSLRASLLRREELSVDDSLDG
SGDCHDSYAVKKTASSLGDLAGWAAATAPAPVLTVAHEERPTAAADPAQS
SRRPVTSAELVGCCRGGGGGNSFPGAAAAAGIDNGFNDSVKPRHDGSSTG
CGAMSGVLFASGGFDSDGNGLVTLRSSERRWRQRTASLSPPTSPMPPALP
PPAARPATAATGSGAADASTDAGGSKSVLPCAILRRAFSTEEDDQWVVVR
HRQSSGEEARQQRYGSNGSITAPERPV*
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mRNA from alignment at P-wetherbeei_contig1611:953..3715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1611.1.1 ID=mRNA_P-wetherbeei_contig1611.1.1|Name=mRNA_P-wetherbeei_contig1611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2763bp|location=Sequence derived from alignment at P-wetherbeei_contig1611:953..3715+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGTGACGGAAGCGGTGCCCACCGCGGTCGGCGGCGGCGCCGCGG
CTGGTTGGACGGTGCGGCCGATGGCTCCGGCAGCGGCAGCTACAGCAGCG
GCTGCACGCCCGCTGGCGCGAACTGCCATCTACGAGCCCGCCACGCCCCA
CTCCGCTGTTAACGGTGGCTGCGATATCGGTGGCAGTGAAGACTGGGACC
GGCCGCGCAGCCGGACGCAGAGCGGACTGGTTGGACAGGCAAGGTCCGTC
CCAACCGCTGGGTCGGGCAGCGGCGGCGTCGGGAGGGGCAGCGGGTCCGA
CGGACGCTACCAGCCGCTGCAGGCGCCGCCACCGGTACAGGCGTCGCCGC
GGTGCACGTGCGCCTGTACTTGTGGCAATCACGGCAGCGCCGGCGAGGGT
CAGAACGCTGCCGCTGGCGGCGGGGGCGATGGCAACGGCAGGAACAGTGC
CGGGCCGCCGAGTCCCGCCGGCAGCATCGGTAGCACCGGCAGTGGGATCG
TGCAGCGCTTCTTCGAGCCGCTGACGCGCCGCCGTGGCGCCAGCTGGCTC
CTCAGCCGCTTTGCGCGCAAGGATGGCAGCACTGGCAGCTGCAGTGGCCC
GGGCAGCCCGGCGCGCAATTCGCCGTCCCGCTCCAACCCGCGTGGGTCCA
TGCGGCACTGCTCATCCGACGGCGGCATCGCCGCCGCCGCCGGCAACGCC
GGTGCCAGTGGCAGTGCCAACGCCACCCCGCGGTGGAGCCGGCTGCGGCC
GACATCGCAGAGCCTCCGGGCGTCGCTGCTGCGGCGCGAGGAGCTCAGCG
TCGACGACAGTCTGGACGGCTCCGGCGACTGCCACGACAGTTACGCCGTA
AAGAAGACGGCCTCTTCGCTGGGCGATCTCGCTGGTTGGGCTGCTGCCAC
CGCGCCGGCGCCGGTTTTGACGGTCGCGCATGAAGAGCGACCGACGGCGG
CGGCGGACCCTGCGCAGTCGTCGCGCCGCCCCGTTACCTCGGCAGAACTG
GTTGGTTGTTGTCGTGGCGGTGGCGGCGGGAATTCCTTCCCCGGTGCCGC
CGCTGCAGCCGGAATCGACAACGGCTTCAACGATTCGGTGAAGCCCCGCC
ACGATGGCAGCAGCACCGGTTGCGGCGCCATGAGCGGCGTCCTCTTTGCC
AGCGGCGGCTTCGACAGCGACGGCAACGGACTCGTGACGCTGCGCTCGTC
GGAGCGGCGCTGGCGGCAGCGCACGGCGAGCCTCAGTCCGCCGACGTCGC
CAATGCCGCCGGCGCTACCGCCGCCTGCCGCCCGCCCTGCTACTGCCGCC
ACCGGTTCAGGCGCTGCTGATGCCTCGACGGACGCCGGCGGAAGCAAATC
TGTTTTGCCGTGCGCCATTCTACGGCGCGCCTTTTCCACGGAGGAGGACG
ACCAGTGGGTGGTGGTTCGCCACCGCCAGTCGAGCGGAGAGGAGGCGCGG
CAGCAGCGATACGGCAGCAACGGGTCCATTACGGCTCCCGAACGACCAGT
GTAACGGGCTCTGGACGCCGACCGGCCCGGCCCGGCCCTGCCTAAGGAGC
TCCGACTTTTATTAGTCGGCCGGCACGGCAGTGCTTGCCCGATGGTGGCA
GCAGGCAAAGATTCCACTGCCCTGTCGCTTCTCGCTGCCGCATGTGTTCT
TTGGAGGCTGCAATGGCGTCCTTTTTTACTCGACAAGTGAGTTAATTCCG
TTGACCGAGCTCTACCTTGCTGCCCCCCCACCGGCAGGGGCATGGCGGTC
GTGCATTTCGCAAAGTTTGTGCGGCATAAAGTTTGGGGGTGAGGGAACAA
TGGAGGCGTTTTCTGTGGTTTGGTGGTGGTTTCGGCGGCAACAGAGGTGG
GGGTGTAGAACCCTTACAACCTACAATACAAAACGAGTGGAAAAAGGAGG
GAGGGGTCAAAAAATAGGATGAGCTTGGGGCCGTCTAGCTAGGGAAACAA
AACGAAATACTAGGGATACGACAAGCTAGCCGTTCGGAACACGCCGTTGA
CAGGCGATCTCTACCAGATTAGCAGCAGCGGGGGAAGGGGCGCAGAAAGC
ATAGGCAACCAACCGACCGGTCGGAAGGGGCGCAGAAAGCATAGGCAACC
AACCGACCGGTCAGAACCGGCCGAGGACAACGAAACCGGCACCCACACCG
GGGAAAAACGCCGGCAGCACTCGTCATTGCCATCGGCGTCCGTAAACGGG
CCGCCGCCGCCGCCGACTGTACGCGAGTACCTTACAGGGAAAAAGGAGGG
GGAGGGGTAGGCTGGGCTTGGGAGTAAGAAGCAGTAGTAACAGGGGGGAG
CAGTGGCAGAAGCGCAGATCAGCAGCCAAGCACTGGCAGTAGCAGAGGAA
GCGGCGAGAGAGTTACAGAGGCCGAACGAAGTACCTGCCGTGTGCATGAC
AAGCACGTTAGCGGCAGGCAGCGGCGCTGATGCCGCAGCCAGCACCACTG
GCTTGCGGGCGACGTTACTTAGAAGGGGACCGGTTAGCGACCGGCCACGC
GACTCCATGTGCGAAGAAAGCGATGCCTCACACACGGGAAACAGCGACGA
GAGTCTAGAGGGGTAAACGGCGCCGCCGGCCGTCGTAGAAAAACCCGCCC
CGTCGGCTGTTGCAATTTACTAGTTACGCAGAGTGCAGCTTTTCGGCCTG
CTCTTTCGGGGCCGCGGTACAGCGCTTGCGAAGTCTACGTTAGCCTGGCC
GGCGTGCCAGGAGCGTCTCTTTTTTCATGTTTTACACATATAAAAGAACC
CTGCAACTGAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1611:953..3715+

>mRNA_P-wetherbeei_contig1611.1.1 ID=mRNA_P-wetherbeei_contig1611.1.1|Name=mRNA_P-wetherbeei_contig1611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig1611:953..3715+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCCGGCAGCGGCAGCTACAGCAGCGGCTGCACGCCCGCTGGCGCG
AACTGCCATCTACGAGCCCGCCACGCCCCACTCCGCTGTTAACGGTGGCT
GCGATATCGGTGGCAGTGAAGACTGGGACCGGCCGCGCAGCCGGACGCAG
AGCGGACTGGTTGGACAGGCAAGGTCCGTCCCAACCGCTGGGTCGGGCAG
CGGCGGCGTCGGGAGGGGCAGCGGGTCCGACGGACGCTACCAGCCGCTGC
AGGCGCCGCCACCGGTACAGGCGTCGCCGCGGTGCACGTGCGCCTGTACT
TGTGGCAATCACGGCAGCGCCGGCGAGGGTCAGAACGCTGCCGCTGGCGG
CGGGGGCGATGGCAACGGCAGGAACAGTGCCGGGCCGCCGAGTCCCGCCG
GCAGCATCGGTAGCACCGGCAGTGGGATCGTGCAGCGCTTCTTCGAGCCG
CTGACGCGCCGCCGTGGCGCCAGCTGGCTCCTCAGCCGCTTTGCGCGCAA
GGATGGCAGCACTGGCAGCTGCAGTGGCCCGGGCAGCCCGGCGCGCAATT
CGCCGTCCCGCTCCAACCCGCGTGGGTCCATGCGGCACTGCTCATCCGAC
GGCGGCATCGCCGCCGCCGCCGGCAACGCCGGTGCCAGTGGCAGTGCCAA
CGCCACCCCGCGGTGGAGCCGGCTGCGGCCGACATCGCAGAGCCTCCGGG
CGTCGCTGCTGCGGCGCGAGGAGCTCAGCGTCGACGACAGTCTGGACGGC
TCCGGCGACTGCCACGACAGTTACGCCGTAAAGAAGACGGCCTCTTCGCT
GGGCGATCTCGCTGGTTGGGCTGCTGCCACCGCGCCGGCGCCGGTTTTGA
CGGTCGCGCATGAAGAGCGACCGACGGCGGCGGCGGACCCTGCGCAGTCG
TCGCGCCGCCCCGTTACCTCGGCAGAACTGGTTGGTTGTTGTCGTGGCGG
TGGCGGCGGGAATTCCTTCCCCGGTGCCGCCGCTGCAGCCGGAATCGACA
ACGGCTTCAACGATTCGGTGAAGCCCCGCCACGATGGCAGCAGCACCGGT
TGCGGCGCCATGAGCGGCGTCCTCTTTGCCAGCGGCGGCTTCGACAGCGA
CGGCAACGGACTCGTGACGCTGCGCTCGTCGGAGCGGCGCTGGCGGCAGC
GCACGGCGAGCCTCAGTCCGCCGACGTCGCCAATGCCGCCGGCGCTACCG
CCGCCTGCCGCCCGCCCTGCTACTGCCGCCACCGGTTCAGGCGCTGCTGA
TGCCTCGACGGACGCCGGCGGAAGCAAATCTGTTTTGCCGTGCGCCATTC
TACGGCGCGCCTTTTCCACGGAGGAGGACGACCAGTGGGTGGTGGTTCGC
CACCGCCAGTCGAGCGGAGAGGAGGCGCGGCAGCAGCGATACGGCAGCAA
CGGGTCCATTACGGCTCCCGAACGACCAGTGTAA
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