mRNA_P-wetherbeei_contig16102.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16102.1.1
Unique NamemRNA_P-wetherbeei_contig16102.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A4D9DHE1_9STRA (Rho-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHE1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.780e-14
Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = 1 
Query:    1 PALSTEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTT-EMLAS-CGDVHAVAGAVKRTLRDHAPVIPYDMYLSFCAP-------------------------DADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGE 438
            P ++      +++A+  L   AL  EGLYR+SG    V SL   + +G L + E L S   D H VAGA+K+ L++H P++ Y +Y  F A                          +  + AL   L PA   LL  L++HL RV    + NRMT   LA  VG+++ R+ E
Sbjct:  132 PPMTPAATASVKIALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPIAGPLEGNEGDRACKEESGGKEGRYMALVQDLRPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGMHLLRKSE 304
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8C7VYK4_ONCMY (Rho GTPase activating protein 12a n=2 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7VYK4_ONCMY)

HSP 1 Score: 77.8 bits (190), Expect = 7.200e-14
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFCAPDADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F    ++      QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  579 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSISEERV--KQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 722
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A060YWY8_ONCMY (Rho-GAP domain-containing protein n=7 Tax=Oncorhynchus TaxID=8016 RepID=A0A060YWY8_ONCMY)

HSP 1 Score: 75.5 bits (184), Expect = 8.970e-14
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APDAD--FAALRH---QLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD      ++R    QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:   55 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIRERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 209
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8C7S3H8_ONCMY (Rho GTPase activating protein 12a n=5 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7S3H8_ONCMY)

HSP 1 Score: 75.5 bits (184), Expect = 4.630e-13
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APDAD--FAALRH---QLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD      ++R    QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  603 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIRERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 757
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8K9XNW6_ONCMY (Rho GTPase activating protein 12a n=3 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8K9XNW6_ONCMY)

HSP 1 Score: 75.5 bits (184), Expect = 4.680e-13
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APDAD--FAALRH---QLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD      ++R    QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  677 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIRERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 831
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8C8HRJ0_ONCTS (Rho-GAP domain-containing protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8HRJ0_ONCTS)

HSP 1 Score: 75.1 bits (183), Expect = 5.510e-13
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APD-----ADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD             QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  267 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIKERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 421
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8C8M628_ONCTS (Uncharacterized protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8M628_ONCTS)

HSP 1 Score: 75.1 bits (183), Expect = 6.280e-13
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APD-----ADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD             QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  577 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIKERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 731
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8C8HXR1_ONCTS (Uncharacterized protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8HXR1_ONCTS)

HSP 1 Score: 75.1 bits (183), Expect = 6.290e-13
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APD-----ADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD             QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  588 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIKERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 742
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: A0A8C8HRE0_ONCTS (Uncharacterized protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8HRE0_ONCTS)

HSP 1 Score: 75.1 bits (183), Expect = 6.320e-13
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APD-----ADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD             QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  623 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIKERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 777
[Close]
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Match: UPI001C3D9E1B (rho GTPase-activating protein 12 isoform X1 n=3 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=UPI001C3D9E1B)

HSP 1 Score: 75.1 bits (183), Expect = 6.410e-13
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:   10 STEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRLTTEMLASCGDVHAVAGAVKRTLRD-HAPVIPYDMYLSFC----APD-----ADFAALRHQLPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET 444
            +T V  F+ + I H++ NAL  +GLYR+SG   V+  L  A+              D+H + GA+K   R+   P+  Y ++  F      PD             QLP  ++  ++ L +HLRRV+ HS+ NRMT  ++A V G  + R   ET
Sbjct:  725 NTAVPSFVTMCIDHVENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVNLEEGKWEDIHVITGALKMFFRELPEPLFTYGLFHDFVNSIKIPDNKQRVQSIKERVKQLPKPNQDTMQVLFKHLRRVIDHSEENRMTTQSVAIVFGPTLLRPETET 879
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DHE1_9STRA4.780e-1432.37Rho-GAP domain-containing protein n=2 Tax=Monodops... [more]
A0A8C7VYK4_ONCMY7.200e-1432.19Rho GTPase activating protein 12a n=2 Tax=Oncorhyn... [more]
A0A060YWY8_ONCMY8.970e-1432.26Rho-GAP domain-containing protein n=7 Tax=Oncorhyn... [more]
A0A8C7S3H8_ONCMY4.630e-1332.26Rho GTPase activating protein 12a n=5 Tax=Oncorhyn... [more]
A0A8K9XNW6_ONCMY4.680e-1332.26Rho GTPase activating protein 12a n=3 Tax=Oncorhyn... [more]
A0A8C8HRJ0_ONCTS5.510e-1331.61Rho-GAP domain-containing protein n=1 Tax=Oncorhyn... [more]
A0A8C8M628_ONCTS6.280e-1331.61Uncharacterized protein n=1 Tax=Oncorhynchus tshaw... [more]
A0A8C8HXR1_ONCTS6.290e-1331.61Uncharacterized protein n=1 Tax=Oncorhynchus tshaw... [more]
A0A8C8HRE0_ONCTS6.320e-1331.61Uncharacterized protein n=1 Tax=Oncorhynchus tshaw... [more]
UPI001C3D9E1B6.410e-1331.61rho GTPase-activating protein 12 isoform X1 n=3 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16102contigP-wetherbeei_contig16102:43..736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7955.ENSDARP00000110192
Preferred nameARHGAP27
PFAMsPH,PH_9,RhoGAP,SH3_1,SH3_9,WW
Model size444
Max annot lvl33208|Metazoa
KEGG koko:K20636,ko:K20637
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006897,GO:0006898,GO:0008047,GO:0008150,GO:0012505,GO:0016192,GO:0017124,GO:0019904,GO:0030234,GO:0030695,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0070013,GO:0097708,GO:0098657,GO:0098772
Exons2
Evalue4.96e-13
EggNOG OGsKOG1450@1|root,KOG1450@2759|Eukaryota,38G3F@33154|Opisthokonta,3B9DF@33208|Metazoa,3CRSX@33213|Bilateria,48828@7711|Chordata,492TC@7742|Vertebrata,49Y0Z@7898|Actinopterygii
DescriptionRho GTPase activating protein 27
Cds size444
COG categoryT
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.3119683-CDS-P-wetherbeei_contig16102:42..1801683186077.3119683-CDS-P-wetherbeei_contig16102:42..180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16102 43..180 +
1683186077.3224602-CDS-P-wetherbeei_contig16102:430..7361683186077.3224602-CDS-P-wetherbeei_contig16102:430..736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16102 431..736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16102.1.1prot_P-wetherbeei_contig16102.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16102 43..736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16102.1.1

>prot_P-wetherbeei_contig16102.1.1 ID=prot_P-wetherbeei_contig16102.1.1|Name=mRNA_P-wetherbeei_contig16102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
PALSTEVVCFLRLAIKHLDENALQEEGLYRISGRSDVVASLTKAIKDGRL
TTEMLASCGDVHAVAGAVKRTLRDHAPVIPYDMYLSFCAPDADFAALRHQ
LPPASERLLECLLQHLRRVLAHSDVNRMTAPALARVVGLNMARRGEET
back to top

mRNA from alignment at P-wetherbeei_contig16102:43..736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16102.1.1 ID=mRNA_P-wetherbeei_contig16102.1.1|Name=mRNA_P-wetherbeei_contig16102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=694bp|location=Sequence derived from alignment at P-wetherbeei_contig16102:43..736+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCCTTTCGACGGAGGTCGTCTGCTTCCTTCGCCTGGCGATCAAACA
TCTGGATGAAAATGCCCTGCAAGAAGAAGGACTTTACCGCATTTCTGGCA
GATCCGACGTGGTTGCGTCGTTGACGAAGGCGATCAAGGTTTGTGCTTAT
CTGCCATTGCTTCTTTTGCGAAGTCTACGCGTCCTTTCACTTATCCTGGT
TCGATGCGGGTTGTTTTAACATGCGCCAAACTTACAGCATGTGCGGCCAT
TTTCGCAATGGGCGCCGAACGAGTGGTCGCATTGCCGTTTTGTCCGATTC
TTTCTGGTCACCCTTTTCTTCTTTCCGGGAGGGCACCCTGCCGCTCCCAC
TGTTCGGACACCACGCACGCCAATTGCCGTTCATTCAGGATGGCAGGTTG
ACGACGGAAATGCTCGCCAGCTGCGGCGACGTCCACGCAGTCGCCGGCGC
CGTCAAGCGGACGCTGCGCGACCACGCGCCGGTCATCCCCTACGATATGT
ACCTGTCCTTCTGCGCCCCCGATGCCGACTTTGCGGCCTTGCGGCACCAG
CTGCCGCCAGCCTCGGAGCGGCTCCTGGAGTGCCTTCTGCAGCACCTCCG
CCGGGTTTTGGCGCACTCCGACGTGAACCGCATGACGGCGCCGGCGCTGG
CACGGGTCGTCGGCCTCAACATGGCCCGCCGCGGCGAGGAGACG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16102:43..736+

>mRNA_P-wetherbeei_contig16102.1.1 ID=mRNA_P-wetherbeei_contig16102.1.1|Name=mRNA_P-wetherbeei_contig16102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig16102:43..736+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCCTTTCGACGGAGGTCGTCTGCTTCCTTCGCCTGGCGATCAAACA
TCTGGATGAAAATGCCCTGCAAGAAGAAGGACTTTACCGCATTTCTGGCA
GATCCGACGTGGTTGCGTCGTTGACGAAGGCGATCAAGGATGGCAGGTTG
ACGACGGAAATGCTCGCCAGCTGCGGCGACGTCCACGCAGTCGCCGGCGC
CGTCAAGCGGACGCTGCGCGACCACGCGCCGGTCATCCCCTACGATATGT
ACCTGTCCTTCTGCGCCCCCGATGCCGACTTTGCGGCCTTGCGGCACCAG
CTGCCGCCAGCCTCGGAGCGGCTCCTGGAGTGCCTTCTGCAGCACCTCCG
CCGGGTTTTGGCGCACTCCGACGTGAACCGCATGACGGCGCCGGCGCTGG
CACGGGTCGTCGGCCTCAACATGGCCCGCCGCGGCGAGGAGACG
back to top