mRNA_P-wetherbeei_contig161.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig161.2.1
Unique NamemRNA_P-wetherbeei_contig161.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig161.2.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 7.690e-32
Identity = 124/425 (29.18%), Postives = 184/425 (43.29%), Query Frame = 3 
Query:  423 QVQHPVMSPDGSLVAFAVLTLTPDGGKVESSRLMIVEEAMGTRVASARLQHPPFHLEWTPDGRGLTLLCDDGEGLAQLMEVRLDLTYAAAAASGDCAAENGVGDDGGSERGPKLT-ARALDRGGPLYYAVVAGRDCSDGATSPAIVAHNGARGGTSYWREDLGAWRRIAAAGRGGCAGAEAE-DTATSPLGYRPQYRAPQPHRAGGAPAVLYVE------GGWLISARVDGTAVRWLTPAMGHCTLAVSPDSRRAVMLDNDPVTDHFSLALISG-EGALDPAGGGSSNGMTARKDADSSSAGVLLEEIPLDRAVIGFWWAPDSSKLLILASHLPRGATXXXXXXXXXXXXXXGLRCQWLVYDCAGRGGGEGLLRPYGGFEFSPRPYGSKVYLAHFDQTYSALSPWAPDSRAFAYAGMAGAFVQRL 1670
            Q+Q PV SPDG +VAF+VL     G  +ES+++++  E+ G+ V    +   PF L                            L  AA                    + P  T  R L +G PL+YA          + +  +V H   R     +  D+               G E +  T  + L     + AP  H  GG  AV+ VE      G  L+S RVDG+A + + P  G  T  VSPD +R  ++  D  T  ++++++ G EGALDP                 S+A +   EIPLDR ++ F+++PDS+KLL LA+ + +                  L+ QW++YDC  R     LL      EFSPRP+  K+YL +FD      +PWAPDS++F+Y     +FVQ +
Sbjct:  331 QIQLPVWSPDGKMVAFSVLKAGSGGAPIESAKILVYRES-GSLVLDVGVPRAPFLLMXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAAA--------------------KTPYRTKTRGLAQGNPLFYAYT-----KKDSRNADMVVHTANR----VYHLDM-------------TTGDEVDISTRAAQL-----FMAPSTHCEGGEDAVILVETDGDESGQHLVSGRVDGSAKKRICPTRGFSTFGVSPDGQRLCLMQQDMTTGFYTISVLEGGEGALDPL----------------STATMEQVEIPLDRVIMAFFFSPDSTKLLCLATKMSKSELAVARSSMRLGFQ---LKFQWVIYDCETRD--VQLLD-----EFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFSYVSAEASFVQEV 681
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BLAST of mRNA_P-wetherbeei_contig161.2.1 vs. uniprot
Match: A0A6H5KL47_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL47_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.360e-13
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 3 
Query: 1002 YRAPQPHRAGGAPAVLYVE------GGWLISARVDGTAVRWLTPAMGHCTLAVSPDSRRAVMLDNDPVTDHFSLALISG-EGALDPAGGGSSNGMTARKDADSSSAGVLLEEIPLDRAVIGFWWAPDSSKLLILAS 1388
            + AP  H  GG  AV+ VE      G  L+SARVDG+A + + P  G  T  VSPD +R  ++  D  T  ++++++ G EGALDP                 S+A +   EIPLDR ++ F+++PDS+KLL LA+
Sbjct:  888 FMAPSTHCEGGEDAVILVETDGDESGQHLVSARVDGSAKKRICPTRGFSTFGVSPDGQRLCLMQQDMTTGFYTISVLEGGEGALDPL----------------STATMEQVEIPLDRVIMAFFFSPDSTKLLCLAT 1007
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig161.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LES5_ECTSI7.690e-3229.18UVR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL47_9PHAE3.360e-1338.24Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig161contigP-wetherbeei_contig161:3339..5865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LES5
Model size2376
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.14e-31
EggNOG OGs2EPPI@1|root,2SSUW@2759|Eukaryota
Cds size1419
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.0088503-UTR-P-wetherbeei_contig161:3338..36171683186077.0088503-UTR-P-wetherbeei_contig161:3338..3617Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig161 3339..3617 +
1683186077.0168197-UTR-P-wetherbeei_contig161:3768..39291683186077.0168197-UTR-P-wetherbeei_contig161:3768..3929Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig161 3769..3929 +
1683186077.0317254-UTR-P-wetherbeei_contig161:5348..58651683186077.0317254-UTR-P-wetherbeei_contig161:5348..5865Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig161 5349..5865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.0242813-CDS-P-wetherbeei_contig161:3929..53481683186077.0242813-CDS-P-wetherbeei_contig161:3929..5348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig161 3930..5348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig161.2.1prot_P-wetherbeei_contig161.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig161 3930..5348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig161.2.1

>prot_P-wetherbeei_contig161.2.1 ID=prot_P-wetherbeei_contig161.2.1|Name=mRNA_P-wetherbeei_contig161.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=473bp
MSPDGSLVAFAVLTLTPDGGKVESSRLMIVEEAMGTRVASARLQHPPFHL
EWTPDGRGLTLLCDDGEGLAQLMEVRLDLTYAAAAASGDCAAENGVGDDG
GSERGPKLTARALDRGGPLYYAVVAGRDCSDGATSPAIVAHNGARGGTSY
WREDLGAWRRIAAAGRGGCAGAEAEDTATSPLGYRPQYRAPQPHRAGGAP
AVLYVEGGWLISARVDGTAVRWLTPAMGHCTLAVSPDSRRAVMLDNDPVT
DHFSLALISGEGALDPAGGGSSNGMTARKDADSSSAGVLLEEIPLDRAVI
GFWWAPDSSKLLILASHLPRGATTAAAAAASVRAGGGGLRCQWLVYDCAG
RGGGEGLLRPYGGFEFSPRPYGSKVYLAHFDQTYSALSPWAPDSRAFAYA
GMAGAFVQRLVAADDAGVAAASAATIASASSAATAVTAGAGTVAAVAATD
VDVPPPIALSRSAELVGWAGRR*
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mRNA from alignment at P-wetherbeei_contig161:3339..5865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig161.2.1 ID=mRNA_P-wetherbeei_contig161.2.1|Name=mRNA_P-wetherbeei_contig161.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2527bp|location=Sequence derived from alignment at P-wetherbeei_contig161:3339..5865+ (Phaeothamnion wetherbeei SAG_119_79)
GCAATGTTTTGAGCGGAAGCAACGGAGGCGTCACTCCCGATGGGCGCGCA
GAGCTCTTCGATGTTACCATTGGTGAAGACGCCGTCGCTCAGCTTGGTTC
GGCGCAATCACCTGATTTGTCAGCACAGTCACCTGCTTTATCGCGTGACT
TCGTTGCAGCCACGCAGTTAAACTGCCTGGGGGATTGTGAAGAGCAAATC
GCACTAGATTTGGAAAAAATAGAAGAAGCGGAGCCAAAAAGGCTCGTACC
TAACCGCCTCTTAGTGCTCTCAAGACATGGTAAGCATGAGGTAAAAGATC
TTTGTTAGACGAGTCACGAAGAAATGTCGTGAGTCCTTATCATTTGCTCG
GTCAAACCCCACCACAATCTCATCACACTTCTTCGCCATTCACCAGCCAC
CCTATCAATCTCATTCTGGAAAATGTCCAGGCACGCATCTGACGTCATGC
GACGCATCCGGCGGCAGCCCCCGCCGTCTCTTTGGATCCGGCACTGGCAG
AATCCCTTGTGAAAGGGGGTGGGCTGGGCGCGCCGATGCCCGCGCCGCCG
CCGCCGCTGCTGACACCGCGGTCCAGGTGCAACATCCCGTCATGAGCCCC
GACGGCTCTTTGGTAGCGTTTGCGGTGCTGACCCTGACGCCGGACGGCGG
AAAGGTTGAGTCGTCGCGACTGATGATAGTGGAGGAGGCGATGGGCACCC
GCGTGGCGTCGGCGCGGCTGCAGCACCCGCCGTTTCACCTGGAGTGGACG
CCGGACGGCCGCGGCCTCACGCTGCTCTGCGACGACGGCGAGGGTCTGGC
GCAGCTGATGGAGGTTCGTCTGGACTTGACTTATGCTGCCGCCGCGGCTT
CTGGCGATTGTGCCGCCGAGAACGGTGTCGGTGACGATGGTGGCAGCGAA
CGCGGTCCAAAACTGACAGCGCGGGCGCTGGACCGCGGCGGCCCGCTGTA
TTATGCGGTTGTCGCTGGAAGGGACTGCAGCGACGGCGCCACCTCGCCGG
CAATTGTTGCACATAACGGCGCCCGTGGCGGTACTTCTTACTGGCGGGAA
GATTTGGGCGCCTGGCGCCGAATCGCTGCCGCTGGCCGCGGCGGCTGTGC
CGGCGCCGAAGCGGAAGACACCGCCACATCGCCGTTGGGCTACCGGCCGC
AGTACCGCGCGCCGCAGCCGCACCGTGCCGGCGGAGCCCCCGCCGTGCTG
TATGTCGAGGGTGGCTGGCTCATCAGCGCGCGTGTGGACGGGACCGCGGT
GCGGTGGCTGACGCCTGCGATGGGTCACTGCACCCTAGCAGTCAGCCCTG
ACAGCCGCCGTGCCGTAATGCTCGATAACGATCCTGTCACTGACCATTTT
TCTCTTGCTCTGATCAGCGGAGAAGGCGCGCTGGATCCGGCCGGCGGTGG
CAGCAGCAACGGCATGACTGCGAGGAAAGACGCAGACAGCTCCAGCGCCG
GTGTCCTGCTTGAGGAGATTCCACTGGATCGCGCCGTGATCGGCTTTTGG
TGGGCTCCAGACTCGTCAAAGCTGTTGATTTTGGCCAGCCACCTGCCCCG
CGGGGCGACGACGGCCGCGGCGGCCGCTGCGTCAGTACGAGCTGGTGGCG
GCGGCCTCCGGTGTCAATGGCTAGTTTATGACTGCGCTGGCCGCGGCGGT
GGGGAGGGACTGTTGCGCCCGTACGGCGGCTTTGAATTCTCGCCGCGGCC
GTACGGTAGCAAGGTCTACCTCGCCCATTTCGATCAAACCTATTCGGCGC
TCTCGCCGTGGGCGCCCGACTCGCGCGCCTTTGCATACGCCGGCATGGCC
GGCGCCTTTGTCCAGCGGCTGGTCGCCGCCGACGATGCCGGCGTCGCTGC
TGCTTCGGCCGCCACCATTGCTTCCGCTAGTTCCGCTGCCACTGCCGTTA
CTGCCGGTGCAGGCACTGTGGCCGCTGTCGCTGCCACCGATGTTGATGTC
CCGCCACCCATCGCGTTGTCACGCAGTGCCGAGCTGGTGGGCTGGGCTGG
GCGGCGGTGAGGCGGGGCAGTCGGCGGCGGTCCTGGCGCCAGCAACTACG
ACGGTAGCTTGAAGGAGACGCTGGCGTCAGCGGCAGCAGCAGCGGCCGTT
GATAACAGCGGTAAAGCAAGGAAGGAAGAGGAAGGGCGAAGCAGAACCAG
CCGTTGTCTTGTCCTTGGCGGACACAAGGTTGGTCCAGCCTTCTTCCAGG
TAAGGCCGATTAGGCCCGGCGGGAGTGGTTATGAGGCTTGGTAAGCAGTG
GAAACAGGCCTTTTTTTAAGTGGAGTGAGTGGAGAGGGTGAAAGTGCGGC
AGGGAGGGGCGGCGTTCAAGGGGTCTACGATAGGCGCCTTCAGGAGAGCG
AACGTGAATAGGTATCGGTATTTCAGTGATCCATTCTCGTTGTCAGAGGC
TGAAAAGAGGCAGGGAAGGAGTATTCGCGAGCGCGAAGGCCCAGTGCGGA
CCTTTCGGCATACCCGCGTATCATCACATTGAACCATTACAGCAGACGCA
CCATAATTCGATCTTCATTCTTTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig161:3339..5865+

>mRNA_P-wetherbeei_contig161.2.1 ID=mRNA_P-wetherbeei_contig161.2.1|Name=mRNA_P-wetherbeei_contig161.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1419bp|location=Sequence derived from alignment at P-wetherbeei_contig161:3339..5865+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCCCGACGGCTCTTTGGTAGCGTTTGCGGTGCTGACCCTGACGCC
GGACGGCGGAAAGGTTGAGTCGTCGCGACTGATGATAGTGGAGGAGGCGA
TGGGCACCCGCGTGGCGTCGGCGCGGCTGCAGCACCCGCCGTTTCACCTG
GAGTGGACGCCGGACGGCCGCGGCCTCACGCTGCTCTGCGACGACGGCGA
GGGTCTGGCGCAGCTGATGGAGGTTCGTCTGGACTTGACTTATGCTGCCG
CCGCGGCTTCTGGCGATTGTGCCGCCGAGAACGGTGTCGGTGACGATGGT
GGCAGCGAACGCGGTCCAAAACTGACAGCGCGGGCGCTGGACCGCGGCGG
CCCGCTGTATTATGCGGTTGTCGCTGGAAGGGACTGCAGCGACGGCGCCA
CCTCGCCGGCAATTGTTGCACATAACGGCGCCCGTGGCGGTACTTCTTAC
TGGCGGGAAGATTTGGGCGCCTGGCGCCGAATCGCTGCCGCTGGCCGCGG
CGGCTGTGCCGGCGCCGAAGCGGAAGACACCGCCACATCGCCGTTGGGCT
ACCGGCCGCAGTACCGCGCGCCGCAGCCGCACCGTGCCGGCGGAGCCCCC
GCCGTGCTGTATGTCGAGGGTGGCTGGCTCATCAGCGCGCGTGTGGACGG
GACCGCGGTGCGGTGGCTGACGCCTGCGATGGGTCACTGCACCCTAGCAG
TCAGCCCTGACAGCCGCCGTGCCGTAATGCTCGATAACGATCCTGTCACT
GACCATTTTTCTCTTGCTCTGATCAGCGGAGAAGGCGCGCTGGATCCGGC
CGGCGGTGGCAGCAGCAACGGCATGACTGCGAGGAAAGACGCAGACAGCT
CCAGCGCCGGTGTCCTGCTTGAGGAGATTCCACTGGATCGCGCCGTGATC
GGCTTTTGGTGGGCTCCAGACTCGTCAAAGCTGTTGATTTTGGCCAGCCA
CCTGCCCCGCGGGGCGACGACGGCCGCGGCGGCCGCTGCGTCAGTACGAG
CTGGTGGCGGCGGCCTCCGGTGTCAATGGCTAGTTTATGACTGCGCTGGC
CGCGGCGGTGGGGAGGGACTGTTGCGCCCGTACGGCGGCTTTGAATTCTC
GCCGCGGCCGTACGGTAGCAAGGTCTACCTCGCCCATTTCGATCAAACCT
ATTCGGCGCTCTCGCCGTGGGCGCCCGACTCGCGCGCCTTTGCATACGCC
GGCATGGCCGGCGCCTTTGTCCAGCGGCTGGTCGCCGCCGACGATGCCGG
CGTCGCTGCTGCTTCGGCCGCCACCATTGCTTCCGCTAGTTCCGCTGCCA
CTGCCGTTACTGCCGGTGCAGGCACTGTGGCCGCTGTCGCTGCCACCGAT
GTTGATGTCCCGCCACCCATCGCGTTGTCACGCAGTGCCGAGCTGGTGGG
CTGGGCTGGGCGGCGGTGA
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