mRNA_P-wetherbeei_contig16096.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A067CE67_SAPPC (DNA polymerase kappa n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CE67_SAPPC) HSP 1 Score: 114 bits (284), Expect = 1.300e-25 Identity = 75/215 (34.88%), Postives = 88/215 (40.93%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLER 645
V DMFFAAVE+RDRPELA P+AVGG GMI T NY AR+ FGVR+AMPGFIG+KLCPEL+F PPD KY+A AEV R IFA+YDP+F + S+DEAYLD+T+ CL R
Sbjct: 90 VDMDMFFAAVEMRDRPELAHVPMAVGGMGMISTANYEARK-------------------------------------------------------------------------------------------------------------FGVRAAMPGFIGKKLCPELVFVPPDMAKYAAVAEVTRRIFAEYDPQFAAASMDEAYLDITDVCLAR 195
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: T0RCX8_SAPDV (DNA polymerase kappa n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RCX8_SAPDV) HSP 1 Score: 110 bits (275), Expect = 2.240e-24 Identity = 73/215 (33.95%), Postives = 87/215 (40.47%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLER 645
V DMFFAAVE+RDRPELA P+AVGG GMI T NY AR+ FGVR+AMPGFIG+KLCP L+F PPD KY+A A+V R IFA+YDP+F + S+DEAYLD+T+ CL R
Sbjct: 90 VDMDMFFAAVEMRDRPELATVPMAVGGMGMISTANYEARK-------------------------------------------------------------------------------------------------------------FGVRAAMPGFIGKKLCPALVFVPPDMAKYAAVADVTRRIFAEYDPQFAAASMDEAYLDITDVCLAR 195
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A1V9YNG6_9STRA (DNA polymerase kappa n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNG6_9STRA) HSP 1 Score: 109 bits (272), Expect = 5.860e-24 Identity = 72/215 (33.49%), Postives = 88/215 (40.93%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLER 645
+ DMFFAAVE+RDRPELA+ P+AVGG GMI TTNY+AR+ FGVR+AMPGFIG+KLCP+LIF PD KY+A A+ R IFA YDP+F + SLDEAYLD+T+ C+ R
Sbjct: 90 IDMDMFFAAVEMRDRPELANVPMAVGGMGMISTTNYVARK-------------------------------------------------------------------------------------------------------------FGVRAAMPGFIGKKLCPDLIFVSPDMAKYAAVADETRKIFALYDPQFMAASLDEAYLDITDICVAR 195
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: R1ENG2_EMIHU (DNA polymerase kappa n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ENG2_EMIHU) HSP 1 Score: 107 bits (266), Expect = 1.980e-23 Identity = 73/207 (35.27%), Postives = 83/207 (40.10%), Query Frame = 1
Query: 10 DMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTN 630
DMF+AAVEIRDRPELADKPVAVGG GMI T NY+ARR +GVRSAMPGFIGQ LC +L+F PDF KY+A AEV R IF +YDP+ + SLDEAYLDLT+
Sbjct: 118 DMFYAAVEIRDRPELADKPVAVGGIGMISTANYVARR-------------------------------------------------------------------------------------------------------------WGVRSAMPGFIGQALCRQLVFVRPDFAKYTAVAEVARAIFREYDPKMTAGSLDEAYLDLTD 215
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A6H5KQM2_9PHAE (DNA polymerase kappa n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQM2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.080e-23 Identity = 71/216 (32.87%), Postives = 87/216 (40.28%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLERV 648
+ DMF+AAVE+RDRPELADKPVAVGG MI TTNY AR + GVRSAMPGFIG+KLCPEL+F PD++KY+ AE +R IF +YDP R++SLDEAYL++T ER+
Sbjct: 99 IDMDMFYAAVEVRDRPELADKPVAVGGESMISTTNYHARLK-------------------------------------------------------------------------------------------------------------GVRSAMPGFIGRKLCPELVFVKPDYEKYTVVAEQIREIFREYDPRMRAYSLDEAYLNVTKVLCERL 205
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A835W128_CHLIN (DNA polymerase kappa n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W128_CHLIN) HSP 1 Score: 103 bits (256), Expect = 8.600e-22 Identity = 70/212 (33.02%), Postives = 83/212 (39.15%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCC 636
V D F+AAV R++PEL PVAVGG GMICT NY+ARR FGVRSAMPGFIG++LCP+L+F PDF KY+AAAEVVRG F Q DP+F S LDEA+LD+T+ C
Sbjct: 139 VDMDCFYAAVHEREQPELKRLPVAVGGMGMICTANYVARR-------------------------------------------------------------------------------------------------------------FGVRSAMPGFIGKRLCPKLVFIKPDFAKYTAAAEVVRGAFRQLDPDFESGGLDEAFLDVTDYC 241
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A8J8WFK6_CHIOP (DNA polymerase kappa n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J8WFK6_CHIOP) HSP 1 Score: 100 bits (250), Expect = 5.350e-21 Identity = 69/209 (33.01%), Postives = 81/209 (38.76%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLT 627
V DMF+AAVE+RD P L DKP+AVG TGM+ T+NY ARR +GVR+AMPGFIG+KLCPELI PPDF KY AA+ V+ IF+QYDP F SLDEAYLD+T
Sbjct: 131 VDMDMFYAAVEMRDDPSLRDKPMAVGSTGMLSTSNYAARR-------------------------------------------------------------------------------------------------------------YGVRAAMPGFIGKKLCPELIIVPPDFTKYKAASREVQEIFSQYDPGFSPMSLDEAYLDIT 230
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A6N2N8D9_SALVM (DNA polymerase kappa n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2N8D9_SALVM) HSP 1 Score: 99.8 bits (247), Expect = 1.060e-20 Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 355 AFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLER 645
AFY A E S R+ V + AR RFGVR+AMPGFI +KLCPELIF P DFKKY+ +E+ R +F +YDP F + SLDEAYLD+T C ER
Sbjct: 111 AFY--AAVETLSNRLLVHVYDSTANYEAR-RFGVRAAMPGFIARKLCPELIFVPTDFKKYTHYSELTRKVFEKYDPNFMAASLDEAYLDITEVCKER 204
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A2N9EKM8_FAGSY (DNA polymerase kappa n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EKM8_FAGSY) HSP 1 Score: 97.1 bits (240), Expect = 1.080e-20 Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 403 VSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLER 645
+S ++ +Y + R FGVR+AMPGFI +KLCPELIF P DFKKY+ +++ R +F +YDP F + SLDEAYLD+T+ C ER
Sbjct: 146 MSMISTANYEARR--FGVRAAMPGFIARKLCPELIFVPVDFKKYTYCSDLTRKVFQKYDPNFMAASLDEAYLDITDVCKER 224
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Match: A0A1W0ACF3_9STRA (DNA polymerase kappa n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACF3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.260e-20 Identity = 69/215 (32.09%), Postives = 82/215 (38.14%), Query Frame = 1
Query: 1 VRQDMFFAAVEIRDRPELADKPVAVGGTGMICTTNYIARRRVPPF*PFFPRCSAVQITSLFLSTFFKARTSGGAACGLIAAVVVH*NGWNGSFSEMKCVFAIPMCNRGE*LRR*LA*RAFYFICASEI*SIRIPVSALTPVSYPSARDRFGVRSAMPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYLDLTNCCLER 645
V DMFFAAVE+RDRPELA P+AVGG GMI T NY AR+ GVR+AMPGFIG+KLCP+L+F P+ KY+A AE R IFA YDP F + S+DEAYLD+T+ C R
Sbjct: 90 VDMDMFFAAVEMRDRPELAKVPMAVGGMGMISTANYEARKH-------------------------------------------------------------------------------------------------------------GVRAAMPGFIGKKLCPDLVFVKPNMAKYAAVAEQTRQIFADYDPNFTAASMDEAYLDITDVCTAR 195 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16096.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16096.1.1 >prot_P-wetherbeei_contig16096.1.1 ID=prot_P-wetherbeei_contig16096.1.1|Name=mRNA_P-wetherbeei_contig16096.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp MPGFIGQKLCPELIFCPPDFKKYSAAAEVVRGIFAQYDPEFRSFSLDEAYback to top mRNA from alignment at P-wetherbeei_contig16096:560..1447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16096.1.1 ID=mRNA_P-wetherbeei_contig16096.1.1|Name=mRNA_P-wetherbeei_contig16096.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig16096:560..1447- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16096:560..1447- >mRNA_P-wetherbeei_contig16096.1.1 ID=mRNA_P-wetherbeei_contig16096.1.1|Name=mRNA_P-wetherbeei_contig16096.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig16096:560..1447- (Phaeothamnion wetherbeei SAG_119_79)back to top |