mRNA_P-wetherbeei_contig1609.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1609.3.1
Unique NamemRNA_P-wetherbeei_contig1609.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1609.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1609contigP-wetherbeei_contig1609:2768..3163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size396
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.6103053-UTR-P-wetherbeei_contig1609:2767..27741683186076.6103053-UTR-P-wetherbeei_contig1609:2767..2774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1609 2768..2774 -
1683186076.6316693-UTR-P-wetherbeei_contig1609:3101..31631683186076.6316693-UTR-P-wetherbeei_contig1609:3101..3163Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1609 3102..3163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.6219614-CDS-P-wetherbeei_contig1609:2774..31011683186076.6219614-CDS-P-wetherbeei_contig1609:2774..3101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1609 2775..3101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1609.3.1prot_P-wetherbeei_contig1609.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1609 2775..3101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1609.3.1

>prot_P-wetherbeei_contig1609.3.1 ID=prot_P-wetherbeei_contig1609.3.1|Name=mRNA_P-wetherbeei_contig1609.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MEAGRVLGLELDLGREMSCSGGFGVGREKRRKNSHLWMGSMTSGRGRGRS
FEQHGQPRRPRLPAKAKSSLFVSKRISSVPGGEQTLSSVMSLPGQQEMLA
VTREVRAC*
back to top

mRNA from alignment at P-wetherbeei_contig1609:2768..3163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1609.3.1 ID=mRNA_P-wetherbeei_contig1609.3.1|Name=mRNA_P-wetherbeei_contig1609.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig1609:2768..3163- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGCGAAAGAGGCCGTCGAATACCAGCTGGATCCGCATTTCGTGTGAA
ACGTGATTGGAAATGGAGGCTGGAAGGGTTTTGGGGTTGGAATTGGATTT
GGGGAGAGAGATGAGTTGTAGTGGTGGTTTCGGGGTCGGTAGGGAGAAGC
GGAGGAAGAACTCACACCTGTGGATGGGAAGCATGACATCCGGGAGGGGC
CGAGGGCGTTCGTTCGAACAACACGGGCAACCGAGGCGGCCACGGCTTCC
CGCGAAGGCGAAGTCCTCCTTGTTCGTTTCCAAGCGTATTTCCAGCGTTC
CAGGTGGAGAACAGACGCTTTCCTCCGTGATGAGCCTACCCGGCCAACAG
GAGATGCTCGCAGTCACGAGGGAGGTCAGGGCATGCTGAATCCCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1609:2768..3163-

>mRNA_P-wetherbeei_contig1609.3.1 ID=mRNA_P-wetherbeei_contig1609.3.1|Name=mRNA_P-wetherbeei_contig1609.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig1609:2768..3163- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCTGGAAGGGTTTTGGGGTTGGAATTGGATTTGGGGAGAGAGAT
GAGTTGTAGTGGTGGTTTCGGGGTCGGTAGGGAGAAGCGGAGGAAGAACT
CACACCTGTGGATGGGAAGCATGACATCCGGGAGGGGCCGAGGGCGTTCG
TTCGAACAACACGGGCAACCGAGGCGGCCACGGCTTCCCGCGAAGGCGAA
GTCCTCCTTGTTCGTTTCCAAGCGTATTTCCAGCGTTCCAGGTGGAGAAC
AGACGCTTTCCTCCGTGATGAGCCTACCCGGCCAACAGGAGATGCTCGCA
GTCACGAGGGAGGTCAGGGCATGCTGA
back to top