mRNA_P-wetherbeei_contig1609.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1609.2.1
Unique NamemRNA_P-wetherbeei_contig1609.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1609.2.1 vs. uniprot
Match: D8LEY3_ECTSI (Serine/threonine-protein phosphatase 6 regulatory subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.510e-14
Identity = 83/216 (38.43%), Postives = 110/216 (50.93%), Query Frame = 3 
Query:  399 AAQAATGAAQRPVSIEEDGGGSPGA-----DGGIDASGSGCIDGXXXXXGGGVRRH--ARRLGYMGHAIMMGQAVIRAQADGGXXXXXXXXXXXSEAG---DSXXXXXXXXXENIGGSGLDGIQRDAAGGEGSSSVGGAVNLVVGLVTASKCSAEWEEYVLGHLARATELQSCPLGGFTIPSRDDENQLSTDFPDDALDMDAAS-MMEQMAQLQMA 1013
            A +A  GAA    + E DG G  G      DG   A+ S    G XXXXG G RR    RRLG+MGH +++ +AV+ A++ GG           +  G   D    XXXXXX               AG E   +  G    V GL+    C+  W+E+V   +A     Q  PLGGF +PSR+DENQLS+DFPD+A+DMD  S ++E M ++Q A
Sbjct:  694 APEAVAGAAGEAPAEEGDGAGEEGTAXXXXDGTAIAADSAAAGGSXXXXGAGRRRSRPGRRLGHMGHVLLLSRAVMGAESGGGEQGVSSPRPSLAAEGGMLDEGGDXXXXXXXXXXXXXXXXXXXXXAGEEAVGTAPGKKTFVAGLLAERDCAEHWQEFVRTTVAAEVSRQMNPLGGFAVPSREDENQLSSDFPDEAVDMDDTSGLLENMNRMQTA 909
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BLAST of mRNA_P-wetherbeei_contig1609.2.1 vs. uniprot
Match: A0A6H5LCR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCR6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.040e-11
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 3 
Query:  546 RHARRLGYMGHAIMMGQAVIRAQADGGXXXXXXXXXXXSEAGDSXXXXXXXXXENIGGSGLDGIQRDAAGGEGSSSVG---GAVNLVVGLVTASKCSAEWEEYVLGHLARATELQSCPLGGFTIPSRDDENQLSTDFPDDALDMDAAS-MMEQMAQLQMA 1013
            R  RRLG+MGH +++ +AV+ A++ GG    XXXXXXX      XXXXXXXXX                   G ++VG   G    V GL+    C+  W+E+V   +A     Q  PLGGF +PSR+DENQLS+DFPD+A+DMD  S ++E M ++Q A
Sbjct:  788 RPGRRLGHMGHVLLLSRAVMEAESGGGEQGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXGEAAVGTAPGKKTFVAGLLAERDCAEHWQEFVRTTVAAEVSRQLNPLGGFAVPSREDENQLSSDFPDEAVDMDDTSGLLENMNRMQTA 947
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BLAST of mRNA_P-wetherbeei_contig1609.2.1 vs. uniprot
Match: A0A7S2B433_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B433_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.930e-5
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:  804 LVTASKCSAEWEEYVLGHLARATELQSCPLGGFTIPSRDDENQ--LSTDFPDDALDMDAASMMEQM 995
            +++ SK + EW E+++  LA  T +Q  PLGGF+ PSR DEN   LSTDF DD  + D  S+ +Q+
Sbjct:   63 MISDSKVAVEWHEFMITTLAEVTSVQCRPLGGFSYPSRHDENMNTLSTDF-DDNTEADDESLAQQL 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1609.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEY3_ECTSI1.510e-1438.43Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6H5LCR6_9PHAE1.040e-1143.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B433_9STRA1.930e-545.45Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1609contigP-wetherbeei_contig1609:836..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LEY3
PFAMsSAPS
Model size1356
Max annot lvl2759|Eukaryota
KEGG koko:K15501
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000235,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007275,GO:0008150,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0030029,GO:0030036,GO:0030588,GO:0030590,GO:0030865,GO:0030866,GO:0032501,GO:0032502,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051293,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:0071944,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902850,GO:1903047
Exons1
Evalue6.54e-16
EggNOG OGsKOG2073@1|root,KOG2073@2759|Eukaryota
Descriptionprotein phosphatase binding
Cds size1029
COG categoryS
BRITEko00000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.660623-UTR-P-wetherbeei_contig1609:835..11611683186076.660623-UTR-P-wetherbeei_contig1609:835..1161Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1609 836..1161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.6718822-CDS-P-wetherbeei_contig1609:1161..21901683186076.6718822-CDS-P-wetherbeei_contig1609:1161..2190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1609 1162..2190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1609.2.1prot_P-wetherbeei_contig1609.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1609 1162..2190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1609.2.1

>prot_P-wetherbeei_contig1609.2.1 ID=prot_P-wetherbeei_contig1609.2.1|Name=mRNA_P-wetherbeei_contig1609.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=343bp
MDDPRRAGLQAHLLGPCRLLQRLLAAQAATGAAQRPVSIEEDGGGSPGAD
GGIDASGSGCIDGGGDGGGGGVRRHARRLGYMGHAIMMGQAVIRAQADGG
GGGGGGGEGSSSEAGDSGAGSGAGGGENIGGSGLDGIQRDAAGGEGSSSV
GGAVNLVVGLVTASKCSAEWEEYVLGHLARATELQSCPLGGFTIPSRDDE
NQLSTDFPDDALDMDAASMMEQMAQLQMAQHEAAAAAGGDGGDGGGNGGG
GGVRGAFAFGNVFPTDPSSGDGGWGQPGGGDNGWANFAEFDDAEPGRGFQ
AFATDFDSAFSSPPGAPPQPPPRAPLFPAVEAFADFAAFPEPA
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mRNA from alignment at P-wetherbeei_contig1609:836..2190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1609.2.1 ID=mRNA_P-wetherbeei_contig1609.2.1|Name=mRNA_P-wetherbeei_contig1609.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1355bp|location=Sequence derived from alignment at P-wetherbeei_contig1609:836..2190+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGGATTTGGCGTCGAGGCAGTCAGAATAACAGGCGGGACAAGGCAGCT
GGGGCAAGGAAAGTCGCTCCGCTTGTGGGTATCAACATTCGTGGCTCTAT
CTTGGAAGAAGCGATTCTTCTCCTTCTCACACTGCTCCGTGGCGGAGCAA
ACCGCGACCCCATTCCCACCATCCCCGTTTCCCTCTCTTTATTTACACTT
ATCGTATGGCCGTTCACTCCGCTCCGCTGTTCATAGGGCGTGCTGAACGT
GTGCCTGGACCTCTTTGCGCGGCACGAGCACAACTCGCTGCTGCACCAAG
CCGTCGCCAACGCCGTCGTCCTCGCCATGGACGACCCCCGCCGCGCCGGC
CTCCAGGCCCACCTGCTGGGCCCGTGCCGGCTCCTGCAGAGACTGCTTGC
AGCGCAGGCTGCTACCGGCGCCGCGCAGCGCCCGGTGTCCATCGAGGAGG
ATGGCGGCGGCTCTCCCGGCGCCGACGGCGGCATTGACGCCAGCGGCAGC
GGCTGCATTGATGGCGGTGGTGATGGCGGCGGCGGCGGGGTTCGACGGCA
TGCACGGCGGCTGGGGTACATGGGCCACGCCATCATGATGGGCCAGGCAG
TCATTCGAGCCCAGGCTGACGGCGGAGGCGGCGGCGGCGGTGGCGGCGAG
GGCAGCAGCAGCGAGGCCGGCGACAGCGGCGCTGGCAGCGGTGCAGGCGG
CGGCGAAAACATCGGGGGCAGCGGCCTCGACGGTATTCAACGCGATGCCG
CCGGCGGCGAAGGCAGCAGCAGCGTCGGCGGGGCCGTAAACTTGGTGGTC
GGACTCGTGACGGCTTCGAAATGCTCTGCCGAATGGGAGGAGTATGTGCT
CGGGCACCTGGCGCGCGCAACCGAGCTCCAGTCCTGCCCGCTGGGCGGAT
TTACGATTCCGTCACGCGACGACGAGAACCAGCTGTCAACAGATTTCCCG
GACGACGCACTCGACATGGATGCCGCTTCCATGATGGAGCAAATGGCGCA
GCTTCAGATGGCGCAGCACGAAGCCGCCGCCGCCGCCGGTGGTGACGGCG
GCGACGGCGGCGGCAACGGCGGCGGCGGCGGTGTCCGAGGCGCCTTCGCC
TTCGGCAACGTCTTCCCTACGGATCCGTCGTCCGGTGATGGCGGATGGGG
TCAGCCCGGTGGAGGCGACAACGGGTGGGCAAACTTTGCGGAGTTCGATG
ACGCCGAGCCTGGAAGGGGCTTTCAGGCCTTCGCCACCGATTTCGACTCG
GCGTTTTCCAGCCCGCCCGGGGCGCCGCCGCAGCCGCCGCCGCGCGCCCC
GCTGTTCCCAGCGGTGGAAGCGTTTGCGGATTTTGCGGCCTTTCCCGAGC
CAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1609:836..2190+

>mRNA_P-wetherbeei_contig1609.2.1 ID=mRNA_P-wetherbeei_contig1609.2.1|Name=mRNA_P-wetherbeei_contig1609.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig1609:836..2190+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACCCCCGCCGCGCCGGCCTCCAGGCCCACCTGCTGGGCCCGTG
CCGGCTCCTGCAGAGACTGCTTGCAGCGCAGGCTGCTACCGGCGCCGCGC
AGCGCCCGGTGTCCATCGAGGAGGATGGCGGCGGCTCTCCCGGCGCCGAC
GGCGGCATTGACGCCAGCGGCAGCGGCTGCATTGATGGCGGTGGTGATGG
CGGCGGCGGCGGGGTTCGACGGCATGCACGGCGGCTGGGGTACATGGGCC
ACGCCATCATGATGGGCCAGGCAGTCATTCGAGCCCAGGCTGACGGCGGA
GGCGGCGGCGGCGGTGGCGGCGAGGGCAGCAGCAGCGAGGCCGGCGACAG
CGGCGCTGGCAGCGGTGCAGGCGGCGGCGAAAACATCGGGGGCAGCGGCC
TCGACGGTATTCAACGCGATGCCGCCGGCGGCGAAGGCAGCAGCAGCGTC
GGCGGGGCCGTAAACTTGGTGGTCGGACTCGTGACGGCTTCGAAATGCTC
TGCCGAATGGGAGGAGTATGTGCTCGGGCACCTGGCGCGCGCAACCGAGC
TCCAGTCCTGCCCGCTGGGCGGATTTACGATTCCGTCACGCGACGACGAG
AACCAGCTGTCAACAGATTTCCCGGACGACGCACTCGACATGGATGCCGC
TTCCATGATGGAGCAAATGGCGCAGCTTCAGATGGCGCAGCACGAAGCCG
CCGCCGCCGCCGGTGGTGACGGCGGCGACGGCGGCGGCAACGGCGGCGGC
GGCGGTGTCCGAGGCGCCTTCGCCTTCGGCAACGTCTTCCCTACGGATCC
GTCGTCCGGTGATGGCGGATGGGGTCAGCCCGGTGGAGGCGACAACGGGT
GGGCAAACTTTGCGGAGTTCGATGACGCCGAGCCTGGAAGGGGCTTTCAG
GCCTTCGCCACCGATTTCGACTCGGCGTTTTCCAGCCCGCCCGGGGCGCC
GCCGCAGCCGCCGCCGCGCGCCCCGCTGTTCCCAGCGGTGGAAGCGTTTG
CGGATTTTGCGGCCTTTCCCGAGCCAGCG
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