mRNA_P-wetherbeei_contig16036.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16036.1.1
Unique NamemRNA_P-wetherbeei_contig16036.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A7X8XQY7_9BURK (Transcription termination factor Rho n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XQY7_9BURK)

HSP 1 Score: 593 bits (1529), Expect = 3.160e-207
Identity = 297/384 (77.34%), Postives = 332/384 (86.46%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAG-----------------------DNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKEASYAG 1083
            G+GFLRGR+YLP P DIYVS+SQV+RF LRMGDMV GQVRPPKSGEKY+GLLKV  VN +DP+ ARRRPHF+QLTPIFPNERY++E                           D S RIIDLFCPIGKGQRGLIVAPPKAGKTILLKK+ANGI AN+P+T+L+ALL+DERPEEVTDM+RSI+ GEV++STFDEPPEQHAHVS+LVL KA R+VEMG+DVVILLDSLTRMGRAYNN TPPSGRTLSGGLD AALRMPKRFFG+ARNIENGGSLTIIATALIETGSKMD+VIFEEFKGTGNME+DLSRRLAERRIFPA+D+KKSGTRHEELLL E+ LRK+WLMRRALDLLG  QDPTEAV+ERMKKTR+N +FL  LG+EA+  G
Sbjct:  295 GFGFLRGRTYLPSPNDIYVSISQVKRFDLRMGDMVTGQVRPPKSGEKYFGLLKVVMVNGIDPEVARRRPHFDQLTPIFPNERYSLETDCTQILAERVAXXXXXXXXXXXXXXXDISARIIDLFCPIGKGQRGLIVAPPKAGKTILLKKLANGITANFPETILMALLVDERPEEVTDMDRSIR-GEVIASTFDEPPEQHAHVSQLVLEKARRLVEMGKDVVILLDSLTRMGRAYNNTTPPSGRTLSGGLDIAALRMPKRFFGSARNIENGGSLTIIATALIETGSKMDDVIFEEFKGTGNMEVDLSRRLAERRIFPALDLKKSGTRHEELLLGEEDLRKIWLMRRALDLLGADQDPTEAVIERMKKTRSNADFLSMLGREAAPRG 677          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A522QM62_9BACT (Transcription termination factor Rho n=3 Tax=bacterium TaxID=1869227 RepID=A0A522QM62_9BACT)

HSP 1 Score: 498 bits (1281), Expect = 2.630e-173
Identity = 241/357 (67.51%), Postives = 297/357 (83.19%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKEA 1071
            GYGFLR  +YLPG  D+YVS SQVRRF LR GDMV+GQVR PK GEKYYGL+KV +++ +DP+  RRRP+F++LTPI+P ERY +E      S RIIDLFCPIGKGQR LIV+PPKAGKT LLK IAN ++ N+PD +L+ALL+DERPEEVTDM RSI +GEVV+STFDE PE H  V+EL + +A R+VE+G+DVVILLDS+TR+ RAYN + P SGRTLSGGLDTAAL  PKRFFGAAR IE GGSLTII TAL++TGSKMD+VIFEEFKGTGNMEL+L+R+LAE R+FPA+DIK+S TRHEELLL E  LRK+W++RRA +++ + +  TE VL+++ +TRTN+EFL ++ KEA
Sbjct:   61 GYGFLRRENYLPGTNDVYVSQSQVRRFELRRGDMVVGQVRCPKEGEKYYGLIKVDTIDGLDPEAVRRRPNFDKLTPIYPQERYRLEVRATQLSTRIIDLFCPIGKGQRALIVSPPKAGKTTLLKNIANSLSINHPDAILIALLVDERPEEVTDMRRSI-DGEVVASTFDEHPENHTAVAELAMERAKRLVELGKDVVILLDSITRLARAYNQVIPTSGRTLSGGLDTAALHKPKRFFGAARKIEEGGSLTIIGTALVDTGSKMDDVIFEEFKGTGNMELNLNRKLAESRVFPAVDIKRSSTRHEELLLGELELRKIWMLRRAFNIIKESE-MTEMVLDKLAQTRTNEEFLQTITKEA 415          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A2W5XDG4_9BACT (Transcription termination factor Rho n=1 Tax=Candidatus Eremiobacteraeota bacterium TaxID=2052317 RepID=A0A2W5XDG4_9BACT)

HSP 1 Score: 488 bits (1255), Expect = 2.900e-169
Identity = 241/357 (67.51%), Postives = 292/357 (81.79%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKEA 1071
            GYGFLR   YL GP DIYVS SQ+RRF LR GD+V GQVR PK GEKYYGL+KV ++N  DP+  R R  FE+ TPI+P ER+ +E      S R+ID+FCPIGKGQR LIV+PPKAGKT LLK IAN I+ N+PD  ++ALL+DERPEEVTDM+R+I +GEVV+STFDE PE H  V+EL + +A R+VE+G+DVVILLDS+TR+ RAYN + P SGRTLSGGLDTA+L  PKRFFGAAR IE GGSLTIIATALIETGSKMD+VIFEEFKGTGNMEL+L+R+LAE R+FPA+DIK+SGTRHEELLL+E+ +RK+W++RRA  +L  G D TE +L+RM +TRTN EFL ++ KEA
Sbjct:   62 GYGFLRRDGYLIGPDDIYVSQSQIRRFELRRGDLVDGQVRRPKEGEKYYGLIKVETINGFDPEAIRGRRVFEKGTPIYPQERFKLEVRSTQLSTRVIDVFCPIGKGQRALIVSPPKAGKTTLLKNIANSISINHPDAHIIALLVDERPEEVTDMQRTI-DGEVVASTFDEHPENHTAVAELTMERAKRLVELGKDVVILLDSITRLARAYNQVIPTSGRTLSGGLDTASLHKPKRFFGAARKIEEGGSLTIIATALIETGSKMDDVIFEEFKGTGNMELNLTRKLAESRVFPAVDIKRSGTRHEELLLNEEEMRKIWMLRRATAVLNAG-DITELILDRMAQTRTNDEFLQTVTKEA 416          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A7V3K3R1_9CHLR (Transcription termination factor Rho n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3K3R1_9CHLR)

HSP 1 Score: 487 bits (1253), Expect = 3.450e-169
Identity = 233/356 (65.45%), Postives = 292/356 (82.02%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKE 1068
            G GFLR    LPGP D+YVS SQ+RRFG+R GD V+GQVRPPK  EKYYGLL+V ++N +DP+ A+RRPHF+ LTPIFPN++  +E   +  S R+ID+  PIG+GQRGLIV+PPKAGKT +LK+IANGI  NYPD  L+ +LI ERPEEVTDM+RS+ E +VV+STFD+P E H  V+E+ L +A R+VE  RDVVILLDS+TR+ RAYN + PPSGRTLSGGLD AAL  PKRFFGAARN+E GGSLTIIAT L++TGS+MD+VI+EEFKGTGNMEL L+R+LAERRIFPA+DI++SGTR EELLL ED L++ WL+RR +D +G G + T+AVLER+++TR N+EFL +L K+
Sbjct:   61 GIGFLRSDHLLPGPEDVYVSQSQIRRFGMRTGDWVVGQVRPPKDTEKYYGLLRVDAINGVDPEVAKRRPHFDSLTPIFPNQQIVLETEPHILSTRLIDIIAPIGRGQRGLIVSPPKAGKTTILKQIANGITTNYPDIHLMVVLIGERPEEVTDMDRSV-EADVVASTFDDPVENHVRVAEMALERAKRLVEGRRDVVILLDSITRLARAYNLVVPPSGRTLSGGLDPAALYPPKRFFGAARNVEEGGSLTIIATCLVDTGSRMDDVIYEEFKGTGNMELHLNRKLAERRIFPALDIERSGTRREELLLDEDTLQRSWLLRRMVDAIGGGPEATQAVLERLRRTRDNKEFLSTLNKD 415          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A1V5P6C8_9BACT (Transcription termination factor Rho n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5P6C8_9BACT)

HSP 1 Score: 485 bits (1249), Expect = 1.550e-168
Identity = 245/357 (68.63%), Postives = 293/357 (82.07%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKEA 1071
            GYGFLR  SYLPG  DIYVS SQ++RF L  GD V+GQ+RPPK+GE+YYGLLKV +VN    + ARRR  F++LTPI+P +R+T+E   ++   R+IDL  P+GKGQR LIVAPPKAGKTILLKKIANGI  NYPD +++A+LI ERPEEVTDM+RSIK GEVVSSTFDEPP+ H  V+EL+L KA R+VE  RDVVILLDSLTR+ RAYN   P SGRTLSGG+DT AL  PK FFGAARNIE GGSLTIIATALIETGSKMD+VI+EEFKGTGNMEL+LSR+LAE+RIFPAID+KKSGTRHEELLLSE  L+K+WL+RRA  +  D  + TE +++R +K+R N EFL ++ +EA
Sbjct:   61 GYGFLRRSSYLPGSDDIYVSQSQIKRFDLCTGDSVIGQIRPPKNGERYYGLLKVITVNEDSAENARRRIPFDKLTPIYPLQRFTLETVPDEIEVRLIDLMSPLGKGQRALIVAPPKAGKTILLKKIANGITTNYPDVIVIAVLIGERPEEVTDMKRSIK-GEVVSSTFDEPPDSHTIVAELILEKAKRLVEHKRDVVILLDSLTRLARAYNLALPTSGRTLSGGIDTMALIKPKAFFGAARNIEEGGSLTIIATALIETGSKMDDVIYEEFKGTGNMELELSRKLAEKRIFPAIDLKKSGTRHEELLLSETDLQKIWLLRRAFAVF-DATEMTELLIDRTRKSRHNAEFLKTITREA 415          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A3M1EX41_9CHLR (Transcription termination factor Rho n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1EX41_9CHLR)

HSP 1 Score: 484 bits (1247), Expect = 2.820e-168
Identity = 237/353 (67.14%), Postives = 288/353 (81.59%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSL 1059
            G GFLR    LPGP D+YVS SQ+RRFGLR GDMV+GQVRPPK  EKYYGLL+V +VN +DP+QA+RRPHFE LTPIFPNE   +E   + ++ R+I+L  PIG+GQRGLIV+PPKAGKT +LK+IANGI ANY D  ++ +LI ERPEEVTDM+RS+ E EV S+TFD P + H  V+E+ LA+A R+VE GRDVVIL DS+TR+ RAYN   PPSGRTLSGGLD AAL  PK FFGAARN+E GGSLTIIAT LI+TGS+MD+VI+EEFKGTGNMEL LSRRL ERRIFPAIDI++S TR EELLL  D L+KVWL+RR +D +G G + TEAV++R+ +T++N+EFLD+L
Sbjct:   61 GIGFLRSDHLLPGPDDVYVSQSQIRRFGLRTGDMVIGQVRPPKETEKYYGLLRVEAVNGLDPEQAKRRPHFENLTPIFPNELLNLETTPHIWATRLINLLAPIGRGQRGLIVSPPKAGKTTILKQIANGITANYDDVHMMVVLIGERPEEVTDMDRSV-EAEVYSATFDAPVQDHVRVAEMSLARAKRLVEGGRDVVILADSITRLARAYNLTVPPSGRTLSGGLDPAALYPPKHFFGAARNVEEGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLSRRLQERRIFPAIDIERSSTRREELLLDPDTLQKVWLLRRMIDAIGGGVEATEAVIQRLARTKSNKEFLDTL 412          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A831X8T4_9CHLR (Transcription termination factor Rho n=2 Tax=Thermorudis peleae TaxID=1382356 RepID=A0A831X8T4_9CHLR)

HSP 1 Score: 480 bits (1236), Expect = 2.230e-166
Identity = 242/356 (67.98%), Postives = 282/356 (79.21%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKE 1068
            GYGFLRG  YLPGP D+YVS SQ+RRFGLR GD V GQVRPPK  EK+Y LL+V +VN MDP+ ARRRP+F+ LTPIFP E   +E   +  S R+++L  PIG+GQRGLIV+PPKAGKTILLK IANGI ANY D  L+ LLI ERPEEVTDM RS+ EGEV+SSTFDEP E H  V+E+ L +A R+VE G DVVILLDS+TR+ RAYN   PPSGRTLSGG+D  AL  PKRFFGAARNIE GGSLTI+AT LI+TGS+MD+VI+EEFKGTGNMEL L R+LAERRI+PAIDI++SGTR EELLL E  LR+VW MRR + +LG G D TE VL R+ KT  N EFL +L K+
Sbjct:   78 GYGFLRGERYLPGPNDVYVSQSQIRRFGLRTGDWVAGQVRPPKENEKFYSLLRVETVNGMDPETARRRPNFDSLTPIFPMELINLETEPHILSTRLLNLVAPIGRGQRGLIVSPPKAGKTILLKHIANGITANYKDIHLIVLLIGERPEEVTDMRRSV-EGEVISSTFDEPVEDHIKVAEMTLERAKRLVECGYDVVILLDSITRLARAYNLAVPPSGRTLSGGIDPVALYPPKRFFGAARNIEGGGSLTIVATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLAERRIYPAIDIQRSGTRREELLLDEQTLRQVWTMRRMVSMLG-GTDGTELVLGRLAKTANNAEFLATLNKD 431          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: D1C2H2_SPHTD (Transcription termination factor Rho n=2 Tax=Sphaerobacteraceae TaxID=85002 RepID=D1C2H2_SPHTD)

HSP 1 Score: 479 bits (1233), Expect = 3.770e-166
Identity = 242/356 (67.98%), Postives = 282/356 (79.21%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKE 1068
            G+GFLRG  YLPGP DIYVS SQ+RRFGLR GD V G VRPPK  EKYY LL+V +VN MDP+ ARRRP+F+ LTPIFP E   +E   N  S R+++L  PIG+GQRGLIV+PPKAGKTILLK IANGI  NY D  L+  LI ERPEEVTDM+RS+ +GEV+SSTFDEP E H  V+E+VL +A R+VE GRDVVILLDS+TR+ RAYN   PPSGRTLSGG+D  AL  PKRFFGAARNIE GGSLTIIAT LI+TGS+MD+VI+EEFKGTGNMEL L R+LAERRI+PAIDI++SGTR EELLL E  LR+VW MRR + +LG G + TE VL R+ KT  N EFL +L K+
Sbjct:   63 GFGFLRGERYLPGPNDIYVSQSQIRRFGLRTGDWVSGHVRPPKENEKYYSLLRVEAVNGMDPETARRRPNFDSLTPIFPLELINLETSPNILSTRLLNLVAPIGRGQRGLIVSPPKAGKTILLKAIANGITTNYEDIHLIVCLIGERPEEVTDMKRSV-DGEVISSTFDEPVEDHTKVAEMVLERAKRLVESGRDVVILLDSITRLARAYNLAVPPSGRTLSGGIDPVALYPPKRFFGAARNIEGGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLAERRIYPAIDIQRSGTRREELLLDEQTLRQVWTMRRMVSMLG-GTEGTELVLGRLAKTANNAEFLATLTKD 416          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A2W4KNE8_9FIRM (Transcription termination factor Rho n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4KNE8_9FIRM)

HSP 1 Score: 479 bits (1234), Expect = 4.640e-166
Identity = 244/359 (67.97%), Postives = 293/359 (81.62%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAV---LERMKKTRTNQEFLDSLGKE 1068
            G+GFLR  +YLP   DIYVS SQ+RRF LR GDMV GQ RPPK  E+Y+ LL+V +VN +D +QAR R HFE LTPIFPNER T+E      ++R+IDL  PIGKGQRGLIVAPPKAGKT+LLK+IANGIA NYPD VL+ +LIDERPEEVTDMERS++ GEV+SSTFD+ PE H  ++++VL +A R+VE GRDVVILLDSLTR+ RA+N +TPPSGRTLSGGLD AA   PKRFFGAARNIE GGSLTIIATALI+TGSKMD+VI+EEFKGTGNMEL L RRLAERRIFPAIDIK+SGTR EELLLS+D L  +W +RR++   GD +DP E +   ++R++KTR+N EF+  + +E
Sbjct:   76 GFGFLRPVNYLPSKEDIYVSPSQIRRFDLRPGDMVSGQARPPKENERYFALLRVEAVNGVDAEQARERLHFEGLTPIFPNERLTLETPGGSIAQRLIDLVAPIGKGQRGLIVAPPKAGKTVLLKQIANGIAHNYPDVVLMVVLIDERPEEVTDMERSVR-GEVLSSTFDQTPENHVKLADMVLERAKRLVEHGRDVVILLDSLTRLTRAHNLVTPPSGRTLSGGLDPAAFYKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDDVIYEEFKGTGNMELHLDRRLAERRIFPAIDIKRSGTRREELLLSKDELEIMWTLRRSM---GD-RDPAEILEKFIDRLRKTRSNAEFIAQVFRE 429          
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Match: A0A8B5XHR1_9CHLR (Transcription termination factor Rho n=1 Tax=Sphaerobacteraceae bacterium TaxID=2099683 RepID=A0A8B5XHR1_9CHLR)

HSP 1 Score: 478 bits (1231), Expect = 7.590e-166
Identity = 235/356 (66.01%), Postives = 282/356 (79.21%), Query Frame = 1
Query:    1 GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYGLLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLFCPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEEVTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILLDSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSGTRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFLDSLGKE 1068
            G+GFLRG  YLPGP DIYVS SQ+RRFGLR GD + G VRPPK  EKYY LL+V +VN MDP+ ARRRP+F+ +TPIFP E+  +E   N  + RI+DL  P+G+GQRGL+V+PPKAGKT+LLK IANG+ +N  D  L+  LI ERPEEVTDM RS+ +GEV+SSTFDEP E H  V+E+ L +A RMVE GRDVVILLDS+TR+ RAYN   PPSGRTLSGG+D  AL  PKRFFGAARNIE GGSLTII+T L++TGS+MD+VI+EEFKGTGNMEL L R+LAERRI+PAID+++SGTR EELLL E  LR+VW MRR + +LG G + TE VL R+ KT TN EFL +L KE
Sbjct:   63 GFGFLRGERYLPGPNDIYVSQSQIRRFGLRTGDWISGHVRPPKDNEKYYSLLRVEAVNGMDPESARRRPNFDHMTPIFPLEQIKLETAPNILATRIVDLVAPVGRGQRGLLVSPPKAGKTLLLKAIANGVTSNCDDVHLMVCLIGERPEEVTDMRRSV-DGEVISSTFDEPVEDHTKVAEMALERAKRMVESGRDVVILLDSITRLARAYNLAVPPSGRTLSGGIDPVALYPPKRFFGAARNIEGGGSLTIISTCLVDTGSRMDDVIYEEFKGTGNMELHLDRKLAERRIYPAIDVQRSGTRREELLLDESTLRQVWTMRRMVSMLG-GTEGTELVLGRLSKTGTNDEFLQTLNKE 416          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16036.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XQY7_9BURK3.160e-20777.34Transcription termination factor Rho n=1 Tax=Burkh... [more]
A0A522QM62_9BACT2.630e-17367.51Transcription termination factor Rho n=3 Tax=bacte... [more]
A0A2W5XDG4_9BACT2.900e-16967.51Transcription termination factor Rho n=1 Tax=Candi... [more]
A0A7V3K3R1_9CHLR3.450e-16965.45Transcription termination factor Rho n=1 Tax=Anaer... [more]
A0A1V5P6C8_9BACT1.550e-16868.63Transcription termination factor Rho n=1 Tax=bacte... [more]
A0A3M1EX41_9CHLR2.820e-16867.14Transcription termination factor Rho n=1 Tax=Chlor... [more]
A0A831X8T4_9CHLR2.230e-16667.98Transcription termination factor Rho n=2 Tax=Therm... [more]
D1C2H2_SPHTD3.770e-16667.98Transcription termination factor Rho n=2 Tax=Sphae... [more]
A0A2W4KNE8_9FIRM4.640e-16667.97Transcription termination factor Rho n=1 Tax=Firmi... [more]
A0A8B5XHR1_9CHLR7.590e-16666.01Transcription termination factor Rho n=1 Tax=Sphae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16036contigP-wetherbeei_contig16036:467..1555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog383372.Rcas_3710
Preferred namerho
PFAMsATP-synt_ab,Rho_N,Rho_RNA_bind
Model size1089
Max annot lvl32061|Chloroflexia
KEGG koko:K03628
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.72e-167
EggNOG OGsCOG1158@1|root,COG1158@2|Bacteria,2G5UQ@200795|Chloroflexi,37547@32061|Chloroflexia
DescriptionFacilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Cds size1089
COG categoryK
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186075.1312149-CDS-P-wetherbeei_contig16036:466..15551683186075.1312149-CDS-P-wetherbeei_contig16036:466..1555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16036 467..1555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16036.1.1prot_P-wetherbeei_contig16036.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16036 467..1555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16036.1.1

>prot_P-wetherbeei_contig16036.1.1 ID=prot_P-wetherbeei_contig16036.1.1|Name=mRNA_P-wetherbeei_contig16036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp
GYGFLRGRSYLPGPADIYVSMSQVRRFGLRMGDMVLGQVRPPKSGEKYYG
LLKVSSVNNMDPDQARRRPHFEQLTPIFPNERYTMEAGDNDFSKRIIDLF
CPIGKGQRGLIVAPPKAGKTILLKKIANGIAANYPDTVLLALLIDERPEE
VTDMERSIKEGEVVSSTFDEPPEQHAHVSELVLAKAMRMVEMGRDVVILL
DSLTRMGRAYNNITPPSGRTLSGGLDTAALRMPKRFFGAARNIENGGSLT
IIATALIETGSKMDEVIFEEFKGTGNMELDLSRRLAERRIFPAIDIKKSG
TRHEELLLSEDGLRKVWLMRRALDLLGDGQDPTEAVLERMKKTRTNQEFL
DSLGKEASYAGK*
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mRNA from alignment at P-wetherbeei_contig16036:467..1555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16036.1.1 ID=mRNA_P-wetherbeei_contig16036.1.1|Name=mRNA_P-wetherbeei_contig16036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig16036:467..1555- (Phaeothamnion wetherbeei SAG_119_79)
GGCTACGGCTTCCTCCGTGGTCGCAGCTACCTGCCTGGCCCCGCCGACAT CTACGTTTCGATGTCGCAGGTTCGCCGTTTCGGTCTGCGTATGGGCGACA TGGTCCTGGGCCAGGTTCGTCCGCCCAAGAGCGGCGAGAAATACTACGGA CTGCTCAAGGTCTCGTCGGTCAACAATATGGACCCCGACCAGGCCCGCCG CCGCCCCCACTTCGAGCAGCTCACGCCCATCTTCCCCAACGAGCGTTATA CGATGGAAGCCGGCGACAACGACTTCAGCAAGCGCATCATCGACCTCTTC TGCCCCATCGGCAAGGGTCAGCGCGGCCTGATCGTCGCTCCTCCCAAAGC CGGTAAGACGATTCTCCTCAAGAAGATCGCCAACGGCATCGCCGCCAACT ACCCGGATACGGTGTTGCTGGCCCTGCTGATCGACGAGCGTCCTGAGGAA GTCACGGACATGGAGCGCAGCATCAAGGAAGGCGAAGTCGTTAGCTCCAC TTTCGACGAGCCGCCCGAGCAGCACGCCCACGTCAGCGAGCTCGTTCTCG CCAAAGCCATGCGTATGGTTGAGATGGGCCGCGATGTTGTCATCCTGCTC GACTCGCTCACCCGTATGGGCCGCGCCTACAACAACATCACGCCTCCTTC GGGACGCACGCTCTCGGGTGGTCTTGATACCGCCGCCCTGCGTATGCCCA AGCGCTTCTTCGGCGCTGCTCGTAACATCGAGAACGGAGGCAGCTTGACC ATCATCGCCACCGCGCTCATCGAGACCGGCAGCAAGATGGACGAGGTGAT TTTCGAAGAGTTCAAAGGCACCGGCAACATGGAGCTCGACCTCTCGCGCC GTCTGGCCGAGCGCCGCATCTTCCCCGCCATCGACATCAAGAAGTCGGGC ACCCGTCACGAAGAGCTGCTGCTCAGCGAAGACGGACTGCGCAAAGTGTG GCTGATGCGCCGCGCTCTCGATCTTCTCGGCGATGGCCAGGATCCGACCG AAGCCGTGCTCGAGCGTATGAAGAAGACCCGTACCAATCAGGAATTCCTC GACTCGCTCGGCAAAGAGGCTTCTTACGCCGGTAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16036:467..1555-

>mRNA_P-wetherbeei_contig16036.1.1 ID=mRNA_P-wetherbeei_contig16036.1.1|Name=mRNA_P-wetherbeei_contig16036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig16036:467..1555- (Phaeothamnion wetherbeei SAG_119_79)
GGCTACGGCTTCCTCCGTGGTCGCAGCTACCTGCCTGGCCCCGCCGACAT
CTACGTTTCGATGTCGCAGGTTCGCCGTTTCGGTCTGCGTATGGGCGACA
TGGTCCTGGGCCAGGTTCGTCCGCCCAAGAGCGGCGAGAAATACTACGGA
CTGCTCAAGGTCTCGTCGGTCAACAATATGGACCCCGACCAGGCCCGCCG
CCGCCCCCACTTCGAGCAGCTCACGCCCATCTTCCCCAACGAGCGTTATA
CGATGGAAGCCGGCGACAACGACTTCAGCAAGCGCATCATCGACCTCTTC
TGCCCCATCGGCAAGGGTCAGCGCGGCCTGATCGTCGCTCCTCCCAAAGC
CGGTAAGACGATTCTCCTCAAGAAGATCGCCAACGGCATCGCCGCCAACT
ACCCGGATACGGTGTTGCTGGCCCTGCTGATCGACGAGCGTCCTGAGGAA
GTCACGGACATGGAGCGCAGCATCAAGGAAGGCGAAGTCGTTAGCTCCAC
TTTCGACGAGCCGCCCGAGCAGCACGCCCACGTCAGCGAGCTCGTTCTCG
CCAAAGCCATGCGTATGGTTGAGATGGGCCGCGATGTTGTCATCCTGCTC
GACTCGCTCACCCGTATGGGCCGCGCCTACAACAACATCACGCCTCCTTC
GGGACGCACGCTCTCGGGTGGTCTTGATACCGCCGCCCTGCGTATGCCCA
AGCGCTTCTTCGGCGCTGCTCGTAACATCGAGAACGGAGGCAGCTTGACC
ATCATCGCCACCGCGCTCATCGAGACCGGCAGCAAGATGGACGAGGTGAT
TTTCGAAGAGTTCAAAGGCACCGGCAACATGGAGCTCGACCTCTCGCGCC
GTCTGGCCGAGCGCCGCATCTTCCCCGCCATCGACATCAAGAAGTCGGGC
ACCCGTCACGAAGAGCTGCTGCTCAGCGAAGACGGACTGCGCAAAGTGTG
GCTGATGCGCCGCGCTCTCGATCTTCTCGGCGATGGCCAGGATCCGACCG
AAGCCGTGCTCGAGCGTATGAAGAAGACCCGTACCAATCAGGAATTCCTC
GACTCGCTCGGCAAAGAGGCTTCTTACGCCGGTAAATAA
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