mRNA_P-wetherbeei_contig16030.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16030.1.1
Unique NamemRNA_P-wetherbeei_contig16030.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16030.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16030contigP-wetherbeei_contig16030:241..1195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size957
Hectar predicted targeting categoryother localisation
Exons1
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186075.013917-UTR-P-wetherbeei_contig16030:240..3551683186075.013917-UTR-P-wetherbeei_contig16030:240..355Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16030 241..355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186075.0235062-CDS-P-wetherbeei_contig16030:355..11951683186075.0235062-CDS-P-wetherbeei_contig16030:355..1195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16030 356..1195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16030.1.1prot_P-wetherbeei_contig16030.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16030 356..1195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16030.1.1

>prot_P-wetherbeei_contig16030.1.1 ID=prot_P-wetherbeei_contig16030.1.1|Name=mRNA_P-wetherbeei_contig16030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MIKSAYRKGSKLKFLISPPQNEFLSGKQQLAKWETRLRHARYLSGRLICN
TTRPSAAAPRRRSNFAVHTTFRRLWSGRHAGGVPVPVGTPGIGCASHLQH
QAARPMGPYQTVVRLVHGERRGRPVLRKWSVSRKWRSCFWSGMSEAEAAA
GKAAKASKTAKAARHGRRRAVGWSSRTGCRRRRRSRRRCRSLRHGCCGCR
HRCAGGPRGKMWVPAWQWGASSTLRPFRRFWRLRRGRWVLLRVSVSQLAW
PVPAAAGSGCCWCYSQCMDRFTRYSNLLFS
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mRNA from alignment at P-wetherbeei_contig16030:241..1195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16030.1.1 ID=mRNA_P-wetherbeei_contig16030.1.1|Name=mRNA_P-wetherbeei_contig16030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=955bp|location=Sequence derived from alignment at P-wetherbeei_contig16030:241..1195+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGCGTGCCGTCTGGCCCGAAGCCGGCGAACGCCGGTGATGCGACGGTC
CGCGAACCCTGCCGTAATGTCACACACCGAAGGAATAGGGAAAGGTAGTT
TGAGGGGAGGATAGCATGATTAAAAGCGCCTATCGCAAAGGAAGCAAGCT
GAAGTTTCTCATCTCACCCCCACAGAATGAGTTTCTTTCCGGGAAACAGC
AGCTGGCCAAATGGGAAACACGCCTTCGTCATGCCAGGTACCTCTCTGGT
CGTCTCATTTGCAACACAACGCGGCCTTCCGCTGCCGCGCCGCGCCGCCG
GAGCAATTTTGCTGTTCACACCACCTTTCGCCGGCTTTGGTCCGGGCGAC
ATGCTGGCGGCGTGCCTGTGCCAGTGGGCACGCCAGGAATTGGGTGCGCA
TCCCACCTTCAACACCAAGCCGCCCGGCCCATGGGCCCGTACCAGACGGT
GGTTCGGCTCGTCCACGGTGAGCGCAGAGGCCGCCCGGTGCTACGGAAAT
GGTCGGTGAGCAGGAAGTGGCGCTCGTGTTTCTGGAGCGGCATGTCAGAG
GCAGAGGCGGCGGCGGGAAAGGCGGCAAAGGCTTCAAAGACGGCAAAGGC
GGCACGGCATGGCCGCCGCCGCGCGGTTGGCTGGAGCAGCCGCACGGGCT
GCCGCCGCCGCCGCCGTTCCCGCAGGCGTTGCCGCAGTCTTCGTCATGGT
TGCTGCGGGTGCCGCCACCGCTGTGCTGGGGGCCCCCGTGGCAAGATGTG
GGTGCCGGCGTGGCAATGGGGGGCCTCCTCCACCCTTCGCCCATTTCGGC
GATTTTGGCGACTTCGGCGGGGGAGGTGGGTTCTGTTAAGAGTATCGGTC
AGCCAACTTGCCTGGCCAGTGCCGGCGGCGGCTGGCAGCGGGTGCTGCTG
GTGCTATTCCCAGTGCATGGACCGTTTTACCCGTTATTCTAATTTACTCT
TTTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16030:241..1195+

>mRNA_P-wetherbeei_contig16030.1.1 ID=mRNA_P-wetherbeei_contig16030.1.1|Name=mRNA_P-wetherbeei_contig16030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig16030:241..1195+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTAAAAGCGCCTATCGCAAAGGAAGCAAGCTGAAGTTTCTCATCTC
ACCCCCACAGAATGAGTTTCTTTCCGGGAAACAGCAGCTGGCCAAATGGG
AAACACGCCTTCGTCATGCCAGGTACCTCTCTGGTCGTCTCATTTGCAAC
ACAACGCGGCCTTCCGCTGCCGCGCCGCGCCGCCGGAGCAATTTTGCTGT
TCACACCACCTTTCGCCGGCTTTGGTCCGGGCGACATGCTGGCGGCGTGC
CTGTGCCAGTGGGCACGCCAGGAATTGGGTGCGCATCCCACCTTCAACAC
CAAGCCGCCCGGCCCATGGGCCCGTACCAGACGGTGGTTCGGCTCGTCCA
CGGTGAGCGCAGAGGCCGCCCGGTGCTACGGAAATGGTCGGTGAGCAGGA
AGTGGCGCTCGTGTTTCTGGAGCGGCATGTCAGAGGCAGAGGCGGCGGCG
GGAAAGGCGGCAAAGGCTTCAAAGACGGCAAAGGCGGCACGGCATGGCCG
CCGCCGCGCGGTTGGCTGGAGCAGCCGCACGGGCTGCCGCCGCCGCCGCC
GTTCCCGCAGGCGTTGCCGCAGTCTTCGTCATGGTTGCTGCGGGTGCCGC
CACCGCTGTGCTGGGGGCCCCCGTGGCAAGATGTGGGTGCCGGCGTGGCA
ATGGGGGGCCTCCTCCACCCTTCGCCCATTTCGGCGATTTTGGCGACTTC
GGCGGGGGAGGTGGGTTCTGTTAAGAGTATCGGTCAGCCAACTTGCCTGG
CCAGTGCCGGCGGCGGCTGGCAGCGGGTGCTGCTGGTGCTATTCCCAGTG
CATGGACCGTTTTACCCGTTATTCTAATTTACTCTTTTCT
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