mRNA_P-wetherbeei_contig16020.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16020.1.1
Unique NamemRNA_P-wetherbeei_contig16020.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: D8LMM3_ECTSI (PAS domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM3_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.100e-43
Identity = 100/170 (58.82%), Postives = 115/170 (67.65%), Query Frame = 1
Query:    1 LDEHQRQHEKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKAGKSKPHAESVLFQERMTVCFS-RDDKRLLGELSGRLSRISTGEEAMTCIVC-VRPLGYARD 504
             +EH RQ EKK+QKRAANR SAQLSRKR+K  +E+L+ +N DL RH +IL V+PD VFAF  A G VWFASTSA+A FGL    + SA FFDLMT DCSKRLR LI  A K      S L  ERMTV F  R    LLGELSGRLS+++     +T  VC VRPL  A D
Sbjct:  373 FEEHIRQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILEVIPDPVFAFDTANGRVWFASTSASAQFGLSVEDLTSACFFDLMTEDCSKRLRVLIDTAAKDVSETNSSLLHERMTVRFKKRKGAILLGELSGRLSQLN----GVTTAVCSVRPLSLATD 538          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A6H5JD63_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD63_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 9.850e-43
Identity = 100/170 (58.82%), Postives = 115/170 (67.65%), Query Frame = 1
Query:    1 LDEHQRQHEKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKAGKSKPHAESVLFQERMTVCFS-RDDKRLLGELSGRLSRISTGEEAMTCIVC-VRPLGYARD 504
             +EH RQ EKK+QKRAANR SAQLSRKR+K  +E+L+ +N DL RH +IL V+PD VFAF  A G VWFASTSA+A FGL    + SA FFDLMT DCSKRLR LI  A K      S L  ERMTV F  R    LLGELSGRLS+++     +T  VC VRPL  A D
Sbjct:  521 FEEHIRQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILEVIPDPVFAFDTANGRVWFASTSASAQFGLSVEDLTSACFFDLMTEDCSKRLRVLIDTAAKEVSETNSSLLHERMTVRFKKRKGAILLGELSGRLSQLN----GVTTAVCSVRPLSLATD 686          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A835YR21_9STRA (PAS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR21_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.900e-35
Identity = 83/158 (52.53%), Postives = 105/158 (66.46%), Query Frame = 1
Query:   37 QKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKAGKSKPHAESVLFQERMTVCFSRDDKR-----LLGELSGRLSRISTGEEAMTCIVCVRPLGY 495
            QKRAANR SAQLSR+R+K  + +L+ ++ +L R  EILAVVPD VFAF A TG + FAS SAAA FGL    + +A+ FDL+TADCS RLRALIA+A    P ++++L  ERMTV F +          LGELSGRL+R   G+ A  C V V  L +
Sbjct:    7 QKRAANRKSAQLSRQRKKAHINELRQEHEELKRQEEILAVVPDPVFAFDALTGRISFASRSAAAQFGLRVEHLLAANLFDLVTADCSNRLRALIARALADHPGSQTLLLGERMTVRFRKGGAASNVAMALGELSGRLNRQDGGQVACVCSVRVLSLMF 164          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A835ZC41_9STRA (E1-E2 ATPase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC41_9STRA)

HSP 1 Score: 138 bits (348), Expect = 9.120e-35
Identity = 90/165 (54.55%), Postives = 110/165 (66.67%), Query Frame = 1
Query:   25 EKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKAGKSKPHAESVLFQERMTVCF-----SRDDKRLLGELSGRLSRISTGEEAMTCIVCVRPLGYARD 504
            E+K+QKRAANR SAQLSR+R+K F++DL+ QN  L R  EIL VVPD VFAF+   G VWFAS SAAA FGL    +  A+FFDL+T DCS RL ALI++A +      SVL +ERMTV F     S +   LLGELSGRL+R   GE  ++C+  VR L    D
Sbjct:  341 ERKLQKRAANRRSAQLSRQRKKAFIDDLRSQNEALRRQEEILDVVPDPVFAFNVHDGLVWFASKSAAAQFGLRVDDLLDANFFDLVTLDCSNRLHALISRALEDDADGASVLLRERMTVRFRKGGASSNVAMLLGELSGRLNR-QDGE--VSCVCSVRLLSLMFD 502          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A6V1RHF1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RHF1_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 8.880e-18
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 1
Query:   25 EKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKAGKSKPHAESVL-FQERMTVCF-SRDDKRLLGELSGRLSRISTGEEAMTCIVCVRP 486
            ++K+QKRAANR SAQLSRKR+K F+++LK +NA L R+ +IL  +PD VFAF A +G + FAS S      +  + +   S F+L+T    K+L+ L+ K   ++P  E  L    R+ +CF ++   R+ GEL G    +   E+ + C+   RP
Sbjct:  123 DRKIQKRAANRKSAQLSRKRKKAFVDELKAENATLKRNKDILDCIPDLVFAFDALSGKIVFASNSVYQCLQVPTARLLDLSIFNLVTESSGKKLKELLDKVVNTRPAQEQRLDLPGRIELCFLTKYMTRVWGELDGV---VQFNEDLIECVCSFRP 275          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A7S2UWG9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.190e-16
Identity = 58/164 (35.37%), Postives = 94/164 (57.32%), Query Frame = 1
Query:    1 LDEHQRQHEKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKAGKSKPHAESVL-FQERMTVCF-SRDDKRLLGELSGRLSRISTGEEAMTCIVCVRP 486
            L+EH  Q++KKM KRAANR SAQLSRKR+K F+++L+ +N  L R+  IL  +PD VF+F A +G   F S S + +  +  S +   S + L+T    K L+ ++ K  + K   E      +R+ +CF ++   ++ GE+ G +   S  ++ + C+   RP
Sbjct:  114 LEEHVEQYKKKMVKRAANRKSAQLSRKRKKAFIDELRSENQVLRRYQHILESIPDLVFSFDAKSGCFCFVSKSVSNYLQIPVSRLLETSVYQLVTGGSGKNLKKILQKTLEGKSDEEERCDLPKRLELCFQTKYMTKIWGEVDGVIHFGS--KDKVECVCTFRP 275          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: B8CC03_THAPS (PAS domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC03_THAPS)

HSP 1 Score: 77.4 bits (189), Expect = 1.660e-13
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   25 EKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALI--AKAGKSKPHAESVLFQERMTVCFSRDDKRLL-GELSGRLSRISTGEEAMTCIVCVRP 486
            +KK  KRAANR+SA LSRKR+K+FL+DL  +N +L R  +IL  +PD + AF A +G + F S S +       + +E  SF+D +T D  K +++    A A K  P  +S++     ++     DK    G+L      +   E++  C+  +RP
Sbjct:  291 DKKQVKRAANRLSASLSRKRKKMFLDDLTHENTELRRKEQILRAIPDLIVAFDA-SGTISFVSESVSRFLNYNTNELEDTSFWDCLTEDSVKMIKSAFMDALAVKRSPSEDSLVLANGDSLLVKLVDKHSQDGKLVSLKGVVHFTEDSPECVCSIRP 446          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A7S2YS82_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YS82_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.800e-13
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    1 LDEHQRQHEKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALIAKA-GKSKPHAESV-----LFQERMTVCFSRDDKRLLGELSGRLSRISTGEEAMTCIVCVRP 486
            LD+     +KK QKRAANR SAQLSRKR+K F+E+LKD+N +L R  +IL  +PD V  F + TG +WF S S +       S +E  SF++ +  D  ++L+A    +    + H ++V     L+  R+     +D   +   L+G    +    E   C+ C+RP
Sbjct:  279 LDDSLHPEDKKEQKRAANRRSAQLSRKRKKQFIEELKDENDELRRKEQILKSIPDLVVVFDS-TGKLWFVSQSISRFIQYEASELEGRSFWERLCPDSVRQLKAAFMDSLAARESHTDTVPLGAGLWDLRL---LDKDGTPVTVTLNGV---VHFAGERPECVCCIRP 439          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A1Z5JY34_FISSO (PAS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JY34_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 7.830e-11
Identity = 58/163 (35.58%), Postives = 82/163 (50.31%), Query Frame = 1
Query:   28 KKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRA-----LIAKAGKSKPHAESVLFQERMTVCFSRDDKRLLGELSGRLSRISTGEEAMTCIVCVRPLGYAR 501
            KK  KRAANR SAQLSRKR+K F+E+LK++N  L R  +IL  +PD V  F + +G +WF S S         S +E  SF+D ++ +  + L+A     L A+   S          E   V  S  +KR+   L+G    +    E   C+  +RPL   R
Sbjct:   32 KKQMKRAANRKSAQLSRKRKKQFIEELKEENDGLRRKEQILRSIPDLVVVFDS-SGKLWFVSESVERFLSFTASELEGTSFWDRLSPESVRILKAAFMDSLAAREDVSDTVQLGTGVWELELVDKSNTNKRV--SLNGV---VHFAGERPECVCSIRPLDNLR 188          
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Match: A0A7S2LIX0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIX0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.400e-10
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   25 EKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEILAVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSKRLRALI--AKAGKSKPHAES 354
            +KK  KRAANR+SA +SRKR+K+F+EDLKD+N +L R   IL  +PD +  F + +G++ F S SA+         +E+ SF+D +T D  + +++    A A K KP  ++
Sbjct:  270 DKKYAKRAANRLSAHMSRKRKKMFVEDLKDENMELRRKEMILRSIPDLIVVFDS-SGSMSFVSQSASRFLNYTSCELENTSFWDRLTEDSVRLIKSAFMDALAVKRKPEDDT 380          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LMM3_ECTSI3.100e-4358.82PAS domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5JD63_9PHAE9.850e-4358.82PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YR21_9STRA4.900e-3552.53PAS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835ZC41_9STRA9.120e-3554.55E1-E2 ATPase-domain-containing protein n=1 Tax=Tri... [more]
A0A6V1RHF1_HETAK8.880e-1839.10Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWG9_9STRA4.190e-1635.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8CC03_THAPS1.660e-1334.39PAS domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2YS82_9STRA7.800e-1335.12Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5JY34_FISSO7.830e-1135.58PAS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S2LIX0_9STRA1.400e-1040.18Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16020contigP-wetherbeei_contig16020:555..1058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMM3
PFAMsPAS
Model size504
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.08e-44
EggNOG OGs2E1ZA@1|root,2S98K@2759|Eukaryota
Ec32 ortholog descriptionPAS domain
Ec32 orthologEc-06_004000.1
DescriptionPAS domain
Cds size504
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.82074-CDS-P-wetherbeei_contig16020:554..10581683186074.82074-CDS-P-wetherbeei_contig16020:554..1058Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16020 555..1058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16020.1.1prot_P-wetherbeei_contig16020.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16020 555..1058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16020.1.1

>prot_P-wetherbeei_contig16020.1.1 ID=prot_P-wetherbeei_contig16020.1.1|Name=mRNA_P-wetherbeei_contig16020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
LDEHQRQHEKKMQKRAANRMSAQLSRKRRKVFLEDLKDQNADLLRHHEIL
AVVPDAVFAFSAATGAVWFASTSAAAHFGLGQSAVESASFFDLMTADCSK
RLRALIAKAGKSKPHAESVLFQERMTVCFSRDDKRLLGELSGRLSRISTG
EEAMTCIVCVRPLGYARD
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mRNA from alignment at P-wetherbeei_contig16020:555..1058-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16020.1.1 ID=mRNA_P-wetherbeei_contig16020.1.1|Name=mRNA_P-wetherbeei_contig16020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig16020:555..1058- (Phaeothamnion wetherbeei SAG_119_79)
CTGGATGAGCACCAGCGGCAGCACGAGAAGAAGATGCAGAAGCGCGCTGC CAATCGCATGAGCGCGCAGCTGAGCCGCAAGCGGCGCAAGGTGTTCCTGG AAGATCTCAAAGACCAAAACGCTGACCTTTTGCGGCACCACGAGATACTG GCGGTGGTGCCGGATGCCGTCTTCGCCTTCAGCGCCGCCACTGGCGCCGT CTGGTTCGCCAGCACGTCGGCGGCGGCGCACTTCGGGCTCGGCCAGAGCG CTGTCGAGTCGGCATCTTTCTTCGACCTCATGACTGCCGACTGCAGCAAG CGGCTGCGGGCGCTCATCGCCAAGGCCGGCAAGAGCAAGCCGCATGCCGA GAGCGTCCTCTTTCAAGAGCGCATGACGGTGTGCTTCAGCCGCGACGACA AGCGCCTGCTCGGAGAGCTGTCGGGCCGCCTCTCGCGGATAAGCACAGGC GAGGAGGCCATGACCTGCATCGTCTGCGTCCGCCCGCTCGGCTACGCGCG GGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16020:555..1058-

>mRNA_P-wetherbeei_contig16020.1.1 ID=mRNA_P-wetherbeei_contig16020.1.1|Name=mRNA_P-wetherbeei_contig16020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig16020:555..1058- (Phaeothamnion wetherbeei SAG_119_79)
CTGGATGAGCACCAGCGGCAGCACGAGAAGAAGATGCAGAAGCGCGCTGC
CAATCGCATGAGCGCGCAGCTGAGCCGCAAGCGGCGCAAGGTGTTCCTGG
AAGATCTCAAAGACCAAAACGCTGACCTTTTGCGGCACCACGAGATACTG
GCGGTGGTGCCGGATGCCGTCTTCGCCTTCAGCGCCGCCACTGGCGCCGT
CTGGTTCGCCAGCACGTCGGCGGCGGCGCACTTCGGGCTCGGCCAGAGCG
CTGTCGAGTCGGCATCTTTCTTCGACCTCATGACTGCCGACTGCAGCAAG
CGGCTGCGGGCGCTCATCGCCAAGGCCGGCAAGAGCAAGCCGCATGCCGA
GAGCGTCCTCTTTCAAGAGCGCATGACGGTGTGCTTCAGCCGCGACGACA
AGCGCCTGCTCGGAGAGCTGTCGGGCCGCCTCTCGCGGATAAGCACAGGC
GAGGAGGCCATGACCTGCATCGTCTGCGTCCGCCCGCTCGGCTACGCGCG
GGAC
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