mRNA_P-wetherbeei_contig1601.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1601.2.1
Unique NamemRNA_P-wetherbeei_contig1601.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1601.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1601contigP-wetherbeei_contig1601:2445..5255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2812
Hectar predicted targeting categoryother localisation
Exons1
Cds size2421
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.5745523-CDS-P-wetherbeei_contig1601:2444..48651683186074.5745523-CDS-P-wetherbeei_contig1601:2444..4865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1601 2445..4865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.58412-UTR-P-wetherbeei_contig1601:4865..52551683186074.58412-UTR-P-wetherbeei_contig1601:4865..5255Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1601 4866..5255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1601.2.1prot_P-wetherbeei_contig1601.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1601 2445..4865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1601.2.1

>prot_P-wetherbeei_contig1601.2.1 ID=prot_P-wetherbeei_contig1601.2.1|Name=mRNA_P-wetherbeei_contig1601.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=807bp
MMVLEPLGTGDDGRSGCGHHSLHYRTTSLLAAGGFPPHQHGANQAVDNMP
DEGWARHGPEEAQGELIAQLKRTFGTPDAESFTAHPTFFEPGSGWNGSGG
AVGGGAGGWSSGEVVGGVCGWVGGGGGGGSRSGSGFHGDGSSRGSGPGDI
GTGGSFLNPPPAAIWPPLPLHPLEGAPPLASLEAAMVGGASTAAATSEGE
AEKHQCRGPHSGHKRFRQRREPPSPMSEDVRAKEAAGFGAAGEVGPPSLP
EGPLMGQKRHQLYPEPQEGRRRPKRRLGPGDGTNESGGGGGGVNGRDRDG
GRGGGRTSGGSESHLNAMTLPSPGRHRSGRNEVLGHSFSFPTFGMSLPPP
SLTVDADWRREAARRMEYTARSSVIAAKAISRRRYTPGGDSGYSYGGEGG
DGGGDRDDDGGYGDAGDADGGSGSGSDGGCGGGADLRLPHVPWHGTAGSG
ASATARGASAGARAPSARAAAAVMKGGGDDSDDEWSEEKETRSRGGSGGG
GGGQRRGRVAAAASKRRQDAVAVQRSNASSHSHGEAGISGGGGGGGSGRS
AQRASPPPPLRGGAAKSSYKCSKCGQLKAQHVCPYAQQLVEVRCAHTQTD
VWLRSIEPDPDEGRSTAMDFYRPGDVVLAPHPSAGDDGGGDDGGGGGGRG
NAEVDYGAESFGTGDGYGVVGDNYGVGGAGYFRRSGGGGGGVGGDGGHSG
GGGGGAVTELTELADRAVASFAGGGGAGMMPLVPHSQLHMVPLTELASIQ
SPESGSPDLRVRRRQPSVAQSLSLLLSGTSSHPPATSERPRWHLPPSGAV
PAIDADF
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mRNA from alignment at P-wetherbeei_contig1601:2445..5255-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1601.2.1 ID=mRNA_P-wetherbeei_contig1601.2.1|Name=mRNA_P-wetherbeei_contig1601.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2811bp|location=Sequence derived from alignment at P-wetherbeei_contig1601:2445..5255- (Phaeothamnion wetherbeei SAG_119_79)
AAAGAATCGAGGCACGGAGAAAAGGGAGGAAGGAACTAAACATCCGAATA
CAGTGCTCTTTTCGCGATGAGAGAGGTATACACGGAGATCTCTTTCTTCT
CTCCTCTGTCTTTACTGATTCGAAAAAGTATTTTTTTTGGTACCGATATC
CGAAAAACAAATGTACGACCGATTTACCAACACGATTTGTATCACCATAC
ACAGTAGAGAGCTCTGGGGCACATGTCTCCTCCCTCTGATCTCTCCATTT
CATTAGTTCCTATCTCCAGTATCTGCACAGTGGTAATCAACCTGGACGAC
GCGGCGAAGGAAAAGTTTGTCGAATAGTCGAAGAGGCACTGTTCCTACCT
TTCGAACGTAGTTCGAACTACCTTTGCGGGAGAGAGAGACATGATGGTTC
TTGAACCGCTCGGGACAGGAGATGACGGCCGAAGTGGCTGTGGACATCAC
AGTCTTCATTACCGGACCACATCGCTGCTAGCTGCAGGCGGCTTCCCGCC
ACATCAGCATGGAGCTAATCAAGCCGTCGACAACATGCCGGACGAAGGCT
GGGCGCGGCATGGACCCGAGGAAGCACAAGGAGAACTGATCGCACAGCTG
AAGCGGACTTTCGGAACTCCTGACGCTGAGAGTTTCACTGCACATCCTAC
CTTTTTCGAGCCTGGAAGCGGCTGGAACGGCAGCGGCGGCGCCGTCGGTG
GTGGTGCCGGCGGCTGGAGCAGCGGCGAGGTCGTCGGTGGTGTCTGCGGC
TGGGTTGGCGGCGGCGGCGGCGGCGGAAGCCGCAGCGGCAGCGGCTTTCA
TGGTGACGGCAGCAGCCGAGGGAGCGGTCCCGGCGACATTGGCACTGGCG
GCAGCTTCCTTAACCCGCCGCCTGCAGCCATATGGCCACCGCTGCCGCTG
CATCCCCTCGAGGGCGCGCCTCCCCTGGCGTCTCTCGAAGCGGCCATGGT
TGGCGGGGCCAGCACCGCGGCGGCCACTTCCGAGGGAGAAGCGGAGAAAC
ACCAATGTCGCGGGCCGCACAGCGGGCACAAGCGCTTCCGGCAGCGACGG
GAACCGCCGTCCCCCATGTCAGAAGATGTACGAGCAAAAGAGGCGGCGGG
CTTCGGCGCTGCCGGGGAGGTCGGGCCGCCTTCGCTGCCGGAAGGGCCAC
TCATGGGGCAGAAGAGGCACCAATTGTACCCGGAGCCGCAGGAGGGCCGG
AGGAGACCAAAAAGACGGCTGGGCCCCGGCGACGGGACAAATGAGAGCGG
CGGCGGCGGCGGCGGCGTCAATGGCCGCGACCGCGACGGAGGCAGAGGAG
GCGGAAGAACCAGCGGTGGAAGCGAGAGCCACCTTAACGCGATGACGCTG
CCGAGCCCTGGCCGGCATCGTTCCGGCCGCAACGAGGTGCTGGGGCACTC
TTTCTCGTTTCCGACCTTCGGAATGTCTCTGCCCCCTCCGTCGCTGACGG
TGGACGCCGATTGGCGGAGGGAAGCAGCGCGGCGAATGGAGTACACTGCG
AGGTCATCCGTCATCGCCGCGAAGGCCATCTCGCGGAGGAGATACACACC
CGGCGGCGACAGCGGTTACAGCTACGGCGGCGAAGGCGGCGACGGCGGCG
GCGACCGAGACGATGACGGCGGCTACGGCGATGCCGGTGATGCCGATGGT
GGGAGTGGGAGCGGCAGCGACGGTGGCTGTGGCGGCGGTGCAGACCTGCG
CCTGCCGCACGTGCCGTGGCACGGCACTGCGGGCTCCGGCGCCAGTGCCA
CTGCCCGCGGCGCCTCGGCGGGGGCTAGAGCACCCAGCGCCCGCGCCGCG
GCAGCCGTGATGAAGGGCGGCGGTGACGACAGTGATGATGAATGGTCCGA
GGAGAAAGAGACTCGCAGCCGCGGCGGTAGCGGCGGCGGCGGCGGCGGCC
AAAGGAGGGGCAGAGTGGCGGCGGCGGCCAGCAAACGGCGTCAGGACGCC
GTGGCGGTGCAGCGCAGCAATGCCAGCTCTCATAGCCACGGCGAGGCCGG
CATTAGTGGCGGTGGTGGCGGCGGCGGCAGCGGTAGGAGTGCCCAACGGG
CGTCGCCCCCGCCTCCGCTCCGCGGCGGCGCTGCGAAGTCTTCGTACAAG
TGTAGCAAGTGCGGCCAGCTAAAGGCGCAACATGTCTGCCCGTACGCACA
GCAGCTGGTGGAGGTCAGGTGCGCCCACACGCAGACGGATGTGTGGCTGC
GGAGCATCGAGCCCGATCCCGACGAAGGGCGATCGACGGCGATGGATTTT
TATCGCCCAGGTGACGTTGTGCTCGCTCCGCATCCGTCAGCCGGAGACGA
CGGCGGCGGCGATGATGGCGGCGGCGGCGGCGGCCGCGGTAACGCCGAGG
TTGACTACGGCGCCGAAAGCTTCGGCACTGGCGATGGCTACGGCGTTGTC
GGCGATAACTACGGCGTTGGCGGCGCTGGATACTTCAGGCGCAGCGGCGG
TGGCGGTGGCGGCGTCGGCGGAGACGGCGGCCACAGTGGCGGCGGCGGCG
GCGGTGCGGTTACTGAGCTGACGGAATTGGCCGATCGCGCCGTTGCCAGC
TTCGCCGGCGGCGGAGGGGCGGGAATGATGCCGCTGGTCCCACACTCACA
GCTGCACATGGTCCCCCTGACAGAGCTAGCGTCAATACAATCGCCGGAGT
CGGGGTCGCCAGATCTGCGGGTTCGTCGGAGGCAGCCATCGGTAGCGCAA
TCCTTGTCATTGCTGCTTTCTGGGACGTCGTCGCATCCGCCGGCGACGTC
CGAGCGGCCTCGATGGCATTTGCCCCCCTCGGGCGCCGTGCCAGCGATCG
ACGCCGATTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1601:2445..5255-

>mRNA_P-wetherbeei_contig1601.2.1 ID=mRNA_P-wetherbeei_contig1601.2.1|Name=mRNA_P-wetherbeei_contig1601.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2421bp|location=Sequence derived from alignment at P-wetherbeei_contig1601:2445..5255- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGTTCTTGAACCGCTCGGGACAGGAGATGACGGCCGAAGTGGCTG
TGGACATCACAGTCTTCATTACCGGACCACATCGCTGCTAGCTGCAGGCG
GCTTCCCGCCACATCAGCATGGAGCTAATCAAGCCGTCGACAACATGCCG
GACGAAGGCTGGGCGCGGCATGGACCCGAGGAAGCACAAGGAGAACTGAT
CGCACAGCTGAAGCGGACTTTCGGAACTCCTGACGCTGAGAGTTTCACTG
CACATCCTACCTTTTTCGAGCCTGGAAGCGGCTGGAACGGCAGCGGCGGC
GCCGTCGGTGGTGGTGCCGGCGGCTGGAGCAGCGGCGAGGTCGTCGGTGG
TGTCTGCGGCTGGGTTGGCGGCGGCGGCGGCGGCGGAAGCCGCAGCGGCA
GCGGCTTTCATGGTGACGGCAGCAGCCGAGGGAGCGGTCCCGGCGACATT
GGCACTGGCGGCAGCTTCCTTAACCCGCCGCCTGCAGCCATATGGCCACC
GCTGCCGCTGCATCCCCTCGAGGGCGCGCCTCCCCTGGCGTCTCTCGAAG
CGGCCATGGTTGGCGGGGCCAGCACCGCGGCGGCCACTTCCGAGGGAGAA
GCGGAGAAACACCAATGTCGCGGGCCGCACAGCGGGCACAAGCGCTTCCG
GCAGCGACGGGAACCGCCGTCCCCCATGTCAGAAGATGTACGAGCAAAAG
AGGCGGCGGGCTTCGGCGCTGCCGGGGAGGTCGGGCCGCCTTCGCTGCCG
GAAGGGCCACTCATGGGGCAGAAGAGGCACCAATTGTACCCGGAGCCGCA
GGAGGGCCGGAGGAGACCAAAAAGACGGCTGGGCCCCGGCGACGGGACAA
ATGAGAGCGGCGGCGGCGGCGGCGGCGTCAATGGCCGCGACCGCGACGGA
GGCAGAGGAGGCGGAAGAACCAGCGGTGGAAGCGAGAGCCACCTTAACGC
GATGACGCTGCCGAGCCCTGGCCGGCATCGTTCCGGCCGCAACGAGGTGC
TGGGGCACTCTTTCTCGTTTCCGACCTTCGGAATGTCTCTGCCCCCTCCG
TCGCTGACGGTGGACGCCGATTGGCGGAGGGAAGCAGCGCGGCGAATGGA
GTACACTGCGAGGTCATCCGTCATCGCCGCGAAGGCCATCTCGCGGAGGA
GATACACACCCGGCGGCGACAGCGGTTACAGCTACGGCGGCGAAGGCGGC
GACGGCGGCGGCGACCGAGACGATGACGGCGGCTACGGCGATGCCGGTGA
TGCCGATGGTGGGAGTGGGAGCGGCAGCGACGGTGGCTGTGGCGGCGGTG
CAGACCTGCGCCTGCCGCACGTGCCGTGGCACGGCACTGCGGGCTCCGGC
GCCAGTGCCACTGCCCGCGGCGCCTCGGCGGGGGCTAGAGCACCCAGCGC
CCGCGCCGCGGCAGCCGTGATGAAGGGCGGCGGTGACGACAGTGATGATG
AATGGTCCGAGGAGAAAGAGACTCGCAGCCGCGGCGGTAGCGGCGGCGGC
GGCGGCGGCCAAAGGAGGGGCAGAGTGGCGGCGGCGGCCAGCAAACGGCG
TCAGGACGCCGTGGCGGTGCAGCGCAGCAATGCCAGCTCTCATAGCCACG
GCGAGGCCGGCATTAGTGGCGGTGGTGGCGGCGGCGGCAGCGGTAGGAGT
GCCCAACGGGCGTCGCCCCCGCCTCCGCTCCGCGGCGGCGCTGCGAAGTC
TTCGTACAAGTGTAGCAAGTGCGGCCAGCTAAAGGCGCAACATGTCTGCC
CGTACGCACAGCAGCTGGTGGAGGTCAGGTGCGCCCACACGCAGACGGAT
GTGTGGCTGCGGAGCATCGAGCCCGATCCCGACGAAGGGCGATCGACGGC
GATGGATTTTTATCGCCCAGGTGACGTTGTGCTCGCTCCGCATCCGTCAG
CCGGAGACGACGGCGGCGGCGATGATGGCGGCGGCGGCGGCGGCCGCGGT
AACGCCGAGGTTGACTACGGCGCCGAAAGCTTCGGCACTGGCGATGGCTA
CGGCGTTGTCGGCGATAACTACGGCGTTGGCGGCGCTGGATACTTCAGGC
GCAGCGGCGGTGGCGGTGGCGGCGTCGGCGGAGACGGCGGCCACAGTGGC
GGCGGCGGCGGCGGTGCGGTTACTGAGCTGACGGAATTGGCCGATCGCGC
CGTTGCCAGCTTCGCCGGCGGCGGAGGGGCGGGAATGATGCCGCTGGTCC
CACACTCACAGCTGCACATGGTCCCCCTGACAGAGCTAGCGTCAATACAA
TCGCCGGAGTCGGGGTCGCCAGATCTGCGGGTTCGTCGGAGGCAGCCATC
GGTAGCGCAATCCTTGTCATTGCTGCTTTCTGGGACGTCGTCGCATCCGC
CGGCGACGTCCGAGCGGCCTCGATGGCATTTGCCCCCCTCGGGCGCCGTG
CCAGCGATCGACGCCGATTTC
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