mRNA_P-wetherbeei_contig16.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16.7.1
Unique NamemRNA_P-wetherbeei_contig16.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16contigP-wetherbeei_contig16:16120..20396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3858
Hectar predicted targeting categoryother localisation
Exons3
Cds size2436
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.718139-UTR-P-wetherbeei_contig16:16119..167461683186073.718139-UTR-P-wetherbeei_contig16:16119..16746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16 16120..16746 -
1683186073.7536922-UTR-P-wetherbeei_contig16:19601..203961683186073.7536922-UTR-P-wetherbeei_contig16:19601..20396Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16 19602..20396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.729348-CDS-P-wetherbeei_contig16:16746..170131683186073.729348-CDS-P-wetherbeei_contig16:16746..17013Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16 16747..17013 -
1683186073.7363317-CDS-P-wetherbeei_contig16:17166..173851683186073.7363317-CDS-P-wetherbeei_contig16:17166..17385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16 17167..17385 -
1683186073.7439818-CDS-P-wetherbeei_contig16:17651..196011683186073.7439818-CDS-P-wetherbeei_contig16:17651..19601Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16 17652..19601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16.7.1prot_P-wetherbeei_contig16.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16 16747..19601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16.7.1

>prot_P-wetherbeei_contig16.7.1 ID=prot_P-wetherbeei_contig16.7.1|Name=mRNA_P-wetherbeei_contig16.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=812bp
MLNCVQIQNAYLKKGKRYQRLSCVRCVRLKRPCDGNKPTCQRCAQTGRHC
HYATTHKRPHPSPGPNEAGAPALVAAAAVERVSFSASSAIGLTGVQQRYL
QSFLACFGEMIPFGVAPSGLVAAIVDSPATASVGSSGDGGGGSRGFGSWN
GGGNGSSRGNGSARDLLRQGTGYGVLAVGALLSGECTDPGESAALILRAN
LCMQRALEVEDLDRDGSNARGGGGGGGSAGGDGGSGGSDAGGEGGSSGSR
GSANCGSGNVELSNDSSNDGGFGCSGGNGGYSDDCNGGNVHIGESGSSHI
RSIASVSTAAAGNGCNSGGGGRPSDGVQLRSWPGGTGVALLSSAEASADF
SPDLPTSVLLCVCQLLEALRHLFSGSYSLFEECLQYAIESFRMVQWGIND
DNGGPNTVVADTTVAASVAAHTEALSAAAAESRCRLGAVLMIFQITGAYG
YSENPCRAPAREMEPLAAVRRRRGRLTLAEAAASPLPWLGPPSSYSNDPG
VEVSGRSRSALGILTVLNAIMEPNSTRMVVGRPGAGGVEFGGCGDAGRAG
ERGRFSAGSNRDAALGTAAAAAGSGSSSSGGDDVDGNSIGNGRGDRIGGD
DGGGSGCGSDGGRASFGGKGDDAGGPSSGEVDERAMVALSQWCFATAVEM
AAEGGGIFLLLVSTSLRNFLMTRLEYSMERSRRAAAAWNGLFPLLSHCPG
VVLVVPAAPARFRLLAKLHDDVVGDSYRSFCNCWNTCQRNTGGILTEVMP
PQAPLTHETIRAEVEQLNPFYQRIVRKSLEWNVAASAALAASATTSAAAG
AANTAAAAVLL*
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mRNA from alignment at P-wetherbeei_contig16:16120..20396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16.7.1 ID=mRNA_P-wetherbeei_contig16.7.1|Name=mRNA_P-wetherbeei_contig16.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4277bp|location=Sequence derived from alignment at P-wetherbeei_contig16:16120..20396- (Phaeothamnion wetherbeei SAG_119_79)
CAGGACTACTGCAGTAATGGGAGAGGCAGGGGAAAGGGGATGAACTCCAT
CAGACCCTAGACCCTTCACCCTGGGTTTTATCGCTGTCTATGCGGGAACC
ATGCTCGGGACCCGCGCTGGACAGTGGACCTGGTGTTGTCATTATTCTGC
ATGGATCCGTTTTCGTCATCAGCTCGTGGGGAAAATGTGTGAGAAGGAAT
AGACAGCGAAGAGGGCCATCTATGATTAAATCAGATCTATCACAGCTATC
GAGGTTTGATTGAAGAAATCGGGGCGGTACCGAGTCTCCAATTTCAGGAA
AACACCGAGATGGGGTGGCAAGACGTCGGAAACGTCATTACCATCCGGTA
GATACGCGGAAGTCTCGTCGAGGCCGCTTTGAAAAGGCTCACGGTAACAT
GGCCTTTTCGATTCTTTTCGGTGGTTGCGTTCTTGGTTCTGTGCGCTCGA
ATGAACCAAAGCAACGTAGATTTATGTAGCACGAGCTCTACACTAGTGAG
AGCAAGTTCAACAGCTTTGATCACTTCCATGCGGCTGAGGCGGCTTGTGG
CGACGCCGCCGAGTTGTAGCGTGGAAGCTGTTCGTAGGGATGTCCTTTTG
GCCCAATCCTCCTCCTCTCGGTTGGACTAACGCCTTGAAAGCGAAGAAAT
ATGGTTGCAACGGGGCGGCTAAACACCGAGGCAGTCCTCGCCCCTTCTCT
CCTCTTCTGCCTTTCGTCTGTCTCTTTTCCCGCCTTCCCAATGTCCCGTG
TTTTTGTTGCTGCAAGAGATTACAGAGGGCACCATCGCGTTCAAAATGCT
TAACTGTGTTCAAATCCAAAATGCCTACCTGAAGAAGGGCAAGCGCTACC
AGCGCCTCAGCTGCGTTCGCTGTGTAAGATTGAAGCGCCCCTGCGACGGC
AACAAGCCGACGTGCCAACGCTGCGCACAGACGGGAAGGCACTGCCACTA
CGCGACGACCCATAAGCGACCCCACCCGTCGCCGGGGCCGAACGAGGCCG
GCGCTCCCGCGCTGGTTGCGGCAGCGGCAGTGGAGCGCGTTTCGTTCTCT
GCATCTAGTGCTATCGGCCTCACGGGCGTCCAGCAGCGTTACCTGCAATC
CTTTCTCGCCTGCTTCGGGGAGATGATACCCTTCGGTGTCGCTCCGAGCG
GCCTCGTCGCCGCGATCGTTGATTCGCCCGCGACGGCCTCGGTCGGCAGC
AGCGGTGATGGCGGCGGAGGCAGCCGAGGTTTTGGCAGCTGGAACGGCGG
CGGCAATGGCAGTTCCCGCGGCAACGGAAGTGCCCGCGACTTGTTGCGGC
AAGGAACTGGCTATGGTGTGCTTGCAGTCGGCGCGCTGTTGTCGGGAGAG
TGCACCGATCCGGGAGAGAGTGCTGCGCTGATTTTGCGAGCCAACCTCTG
CATGCAGCGCGCTCTCGAAGTGGAAGACCTCGACCGCGACGGCAGCAACG
CCCGCGGTGGAGGCGGCGGCGGCGGCAGCGCCGGTGGCGACGGTGGCAGT
GGTGGCTCTGATGCAGGCGGAGAAGGCGGCAGCAGCGGCAGCCGTGGGAG
CGCCAACTGTGGGAGCGGCAATGTCGAGCTTAGCAACGACAGTTCCAATG
ACGGCGGGTTCGGCTGCAGCGGCGGCAACGGCGGCTACAGTGACGACTGC
AACGGCGGAAATGTCCACATCGGTGAAAGTGGCAGTAGCCATATTCGCTC
CATCGCCAGCGTTTCCACCGCAGCCGCCGGCAACGGCTGCAACAGCGGCG
GTGGCGGCCGCCCCTCTGACGGCGTGCAGCTCCGGTCATGGCCTGGTGGC
ACCGGCGTCGCACTCCTCTCATCAGCCGAGGCTTCCGCAGATTTTTCTCC
CGACCTTCCTACAAGCGTGCTGCTGTGCGTGTGCCAGCTGCTTGAGGCCC
TTCGCCATCTCTTCAGCGGCTCGTATTCCCTTTTCGAGGAATGCCTCCAA
TACGCCATCGAGTCCTTTCGTATGGTCCAGTGGGGCATCAACGACGACAA
CGGGGGCCCTAACACCGTTGTGGCAGATACAACCGTGGCGGCGTCAGTGG
CGGCGCATACCGAGGCCCTCAGCGCAGCGGCAGCGGAGAGCCGCTGCAGG
TTGGGAGCGGTGCTAATGATCTTTCAGATCACCGGGGCGTACGGCTACAG
CGAGAACCCCTGCCGCGCGCCGGCGCGAGAAATGGAGCCCCTGGCAGCCG
TCCGGCGCCGCCGAGGACGCCTTACCCTCGCCGAGGCGGCCGCGTCACCG
CTGCCGTGGCTCGGCCCGCCGTCGTCCTATTCCAATGACCCTGGCGTTGA
GGTCAGCGGCCGCAGCCGCTCGGCGCTCGGGATCTTGACTGTCCTGAACG
CGATCATGGAGCCGAATTCAACGAGAATGGTCGTTGGGCGGCCGGGGGCA
GGAGGAGTGGAGTTCGGTGGCTGTGGGGACGCGGGGCGCGCCGGGGAGCG
CGGACGGTTCAGCGCTGGTTCTAATCGTGACGCTGCTCTCGGCACGGCCG
CTGCTGCAGCTGGGAGCGGCAGCAGCAGCAGCGGAGGCGACGATGTTGAC
GGCAACAGCATCGGAAACGGCAGGGGCGACCGGATTGGCGGCGACGACGG
CGGCGGCAGTGGCTGTGGCAGCGACGGAGGCAGAGCGAGCTTCGGCGGCA
AGGGTGATGACGCCGGCGGTCCGTCGAGCGGAGAGGTGGACGAGAGAGCG
ATGGTTGCGCTTTCTCAGTGGTGTTTCGCCACTGCGGTGGAGATGGTCAG
TCGTCCTGCCGCCTTCGTTCTGGTTTGCTCCTTCTGTTTTGGTATCTTGG
CGCGTCTGTCGGTGTTGAAAATTAACTTCTCCTGGCGTCCACACCGCCCG
GCGCGTGCTGTCGCGAAGCAAAGGTATTGCATGTCATCATTTCTCCTGGG
AGTTCTTCCTTATGGTCTGCGGCCGTCACGGTCACACGCTCCTTGTTCCC
CACTTCTACGGCGCTGCTTACCCCCCCCCCTTTCCAACCCCCAAAATGCT
TCGCCAACCAGGCGGCGGAAGGAGGAGGCATATTTCTCCTCCTCGTTTCG
ACAAGCCTGAGGAACTTTCTCATGACGCGCCTTGAATATTCCATGGAACG
TTCGCGGCGGGCAGCGGCCGCCTGGAACGGCCTTTTCCCGCTGCTGAGCC
ACTGCCCTGGCGTCGTCCTGGTGGTGCCGGCGGCTCCGGCACGGTTCCGG
CTGCTGGCCAAGCTTCATGACGATGTTGTGGTGGGTCGCCTTTTCTGTTC
CTTTTTTTCCCGAGCGCGGTGTTTTCGGGGCCTTTATACATCCACTTAGT
GATGATGTTAGCCAACACACCACCCCGTGTTTCTGGTTTTGTCCTGCTAT
CACCGCCTCTTCCGACTCGTGCGGCGGATGCAGGGAGATTCGTACCGCAG
CTTTTGCAACTGCTGGAACACCTGCCAACGGAATACGGGCGGCATTCTCA
CCGAAGTCATGCCGCCGCAGGCGCCGCTAACGCACGAGACGATCCGAGCC
GAAGTCGAGCAATTGAACCCGTTTTATCAAAGAATAGTGCGGAAGAGCCT
GGAGTGGAACGTGGCGGCCTCTGCAGCGCTCGCAGCGTCTGCGACTACTT
CTGCGGCAGCGGGTGCGGCGAACACGGCTGCGGCGGCAGTGTTGTTGTGA
CGCGCGCGGAAAGTGGCGTCCCTCTCCTGACGAGGATGGAAGCTGCTGAT
CGGGCTGTGCTTCTATGGCGATTGCTTTGCCATTCTGGCTTTTTGCTCTT
TTGTATTTAAGATTGCATCAGCAGACCGAGAGATGAGCGAGAAAGGAGAA
CGCTTGCAATGTACCTTAGAAGGACTGTAAATCGTGCGAGTAAGAAAGCG
AGTTTTGCGTTATTCTGGACGTGGCCAAGAGGTTAGAGCGCACGGATAGA
GGAGTCGAGGAGTCGCTCAAAGCAGCAGGCAGAGGTGCGCGAAAGCAATC
CCGGCTCCCTGAAATCGCAGAGATTTCCGGCAATGTCGTTATCAGATGGA
TTATACTGCCTGTTGAGTACGTTAGATGTTCCTTCAGGTGTGCAAACAAC
GCGCCGCCTCGTTGAGGCCGCGCTGGAGCGAAAGTCGAACGCGCGCAGAA
TTACCGGCCTTGCGGGCTTTTTTCTTGTTGCCCTGCTGTGCTAATCACTG
CAAGAGTATTGATCAGCCAATCTCGCCTGGCATGTGCCGGCGGGCGGCGG
CAGTTGGTAGTGGCAGCGGTGCCGCCGGCTCTCCCTCATTGTAAACGGTT
TTATCCGTTATCCTTATTTAAACACCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16:16120..20396-

>mRNA_P-wetherbeei_contig16.7.1 ID=mRNA_P-wetherbeei_contig16.7.1|Name=mRNA_P-wetherbeei_contig16.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2436bp|location=Sequence derived from alignment at P-wetherbeei_contig16:16120..20396- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTAACTGTGTTCAAATCCAAAATGCCTACCTGAAGAAGGGCAAGCG
CTACCAGCGCCTCAGCTGCGTTCGCTGTGTAAGATTGAAGCGCCCCTGCG
ACGGCAACAAGCCGACGTGCCAACGCTGCGCACAGACGGGAAGGCACTGC
CACTACGCGACGACCCATAAGCGACCCCACCCGTCGCCGGGGCCGAACGA
GGCCGGCGCTCCCGCGCTGGTTGCGGCAGCGGCAGTGGAGCGCGTTTCGT
TCTCTGCATCTAGTGCTATCGGCCTCACGGGCGTCCAGCAGCGTTACCTG
CAATCCTTTCTCGCCTGCTTCGGGGAGATGATACCCTTCGGTGTCGCTCC
GAGCGGCCTCGTCGCCGCGATCGTTGATTCGCCCGCGACGGCCTCGGTCG
GCAGCAGCGGTGATGGCGGCGGAGGCAGCCGAGGTTTTGGCAGCTGGAAC
GGCGGCGGCAATGGCAGTTCCCGCGGCAACGGAAGTGCCCGCGACTTGTT
GCGGCAAGGAACTGGCTATGGTGTGCTTGCAGTCGGCGCGCTGTTGTCGG
GAGAGTGCACCGATCCGGGAGAGAGTGCTGCGCTGATTTTGCGAGCCAAC
CTCTGCATGCAGCGCGCTCTCGAAGTGGAAGACCTCGACCGCGACGGCAG
CAACGCCCGCGGTGGAGGCGGCGGCGGCGGCAGCGCCGGTGGCGACGGTG
GCAGTGGTGGCTCTGATGCAGGCGGAGAAGGCGGCAGCAGCGGCAGCCGT
GGGAGCGCCAACTGTGGGAGCGGCAATGTCGAGCTTAGCAACGACAGTTC
CAATGACGGCGGGTTCGGCTGCAGCGGCGGCAACGGCGGCTACAGTGACG
ACTGCAACGGCGGAAATGTCCACATCGGTGAAAGTGGCAGTAGCCATATT
CGCTCCATCGCCAGCGTTTCCACCGCAGCCGCCGGCAACGGCTGCAACAG
CGGCGGTGGCGGCCGCCCCTCTGACGGCGTGCAGCTCCGGTCATGGCCTG
GTGGCACCGGCGTCGCACTCCTCTCATCAGCCGAGGCTTCCGCAGATTTT
TCTCCCGACCTTCCTACAAGCGTGCTGCTGTGCGTGTGCCAGCTGCTTGA
GGCCCTTCGCCATCTCTTCAGCGGCTCGTATTCCCTTTTCGAGGAATGCC
TCCAATACGCCATCGAGTCCTTTCGTATGGTCCAGTGGGGCATCAACGAC
GACAACGGGGGCCCTAACACCGTTGTGGCAGATACAACCGTGGCGGCGTC
AGTGGCGGCGCATACCGAGGCCCTCAGCGCAGCGGCAGCGGAGAGCCGCT
GCAGGTTGGGAGCGGTGCTAATGATCTTTCAGATCACCGGGGCGTACGGC
TACAGCGAGAACCCCTGCCGCGCGCCGGCGCGAGAAATGGAGCCCCTGGC
AGCCGTCCGGCGCCGCCGAGGACGCCTTACCCTCGCCGAGGCGGCCGCGT
CACCGCTGCCGTGGCTCGGCCCGCCGTCGTCCTATTCCAATGACCCTGGC
GTTGAGGTCAGCGGCCGCAGCCGCTCGGCGCTCGGGATCTTGACTGTCCT
GAACGCGATCATGGAGCCGAATTCAACGAGAATGGTCGTTGGGCGGCCGG
GGGCAGGAGGAGTGGAGTTCGGTGGCTGTGGGGACGCGGGGCGCGCCGGG
GAGCGCGGACGGTTCAGCGCTGGTTCTAATCGTGACGCTGCTCTCGGCAC
GGCCGCTGCTGCAGCTGGGAGCGGCAGCAGCAGCAGCGGAGGCGACGATG
TTGACGGCAACAGCATCGGAAACGGCAGGGGCGACCGGATTGGCGGCGAC
GACGGCGGCGGCAGTGGCTGTGGCAGCGACGGAGGCAGAGCGAGCTTCGG
CGGCAAGGGTGATGACGCCGGCGGTCCGTCGAGCGGAGAGGTGGACGAGA
GAGCGATGGTTGCGCTTTCTCAGTGGTGTTTCGCCACTGCGGTGGAGATG
GCGGCGGAAGGAGGAGGCATATTTCTCCTCCTCGTTTCGACAAGCCTGAG
GAACTTTCTCATGACGCGCCTTGAATATTCCATGGAACGTTCGCGGCGGG
CAGCGGCCGCCTGGAACGGCCTTTTCCCGCTGCTGAGCCACTGCCCTGGC
GTCGTCCTGGTGGTGCCGGCGGCTCCGGCACGGTTCCGGCTGCTGGCCAA
GCTTCATGACGATGTTGTGGGAGATTCGTACCGCAGCTTTTGCAACTGCT
GGAACACCTGCCAACGGAATACGGGCGGCATTCTCACCGAAGTCATGCCG
CCGCAGGCGCCGCTAACGCACGAGACGATCCGAGCCGAAGTCGAGCAATT
GAACCCGTTTTATCAAAGAATAGTGCGGAAGAGCCTGGAGTGGAACGTGG
CGGCCTCTGCAGCGCTCGCAGCGTCTGCGACTACTTCTGCGGCAGCGGGT
GCGGCGAACACGGCTGCGGCGGCAGTGTTGTTGTGA
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