mRNA_P-wetherbeei_contig15978.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15978.1.1
Unique NamemRNA_P-wetherbeei_contig15978.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15978.1.1 vs. uniprot
Match: A0A7R9YFC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFC9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.910e-10
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    1 VVEKDRPRGLTHSWNLAYQI-FKREGYETFFVVNNDLIVPPGALERMVAALEDDDAAADEVGPLYHREGLGH 213
            ++EK  P+GLTHSWNLAY++    + Y+     NND++VP G ++ +V ALE        V P+  R G GH
Sbjct:  106 IIEKPEPKGLTHSWNLAYKLAVAADAYDNVIFSNNDILVPEGVVDNLVRALEHHPI----VVPMTSRLGAGH 173
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BLAST of mRNA_P-wetherbeei_contig15978.1.1 vs. uniprot
Match: A0A815J0I5_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A815J0I5_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 9.460e-9
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 VVEKDRPRGLTHSWNLAYQIFKREGYETFFVVNNDLIVPPGALERM 138
            ++  DRP GLT+SWNL YQ++K+  Y    + NND+++P GA+  +
Sbjct:   83 IISNDRPHGLTYSWNLGYQLWKKSDYTNLLIANNDILIPKGAITEL 128
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BLAST of mRNA_P-wetherbeei_contig15978.1.1 vs. uniprot
Match: A0A0F9BR88_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9BR88_9ZZZZ)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-7
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   10 KDRPRGLTHSWNLAYQIFKREGYETFFVVNNDLIVPPGALERMVAALEDDDAAADEVGPLYHREGL 207
            KD+P GLT+SWNLAYQ FK+  Y+   + N+D+  P G  E +V  L++ D     + PL +  G+
Sbjct:    2 KDQPMGLTNSWNLAYQHFKKFEYDNCILSNDDVRFPAGFSEGLVEGLKEFDL----IAPLSNEPGI 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7R9YFC9_9STRA3.910e-1041.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A815J0I5_9BILA9.460e-943.48Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A0F9BR88_9ZZZZ1.310e-740.91Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15978contigP-wetherbeei_contig15978:948..1381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size213
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.2129588-CDS-P-wetherbeei_contig15978:947..10131683186073.2129588-CDS-P-wetherbeei_contig15978:947..1013Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15978 948..1013 +
1683186073.226302-CDS-P-wetherbeei_contig15978:1234..13811683186073.226302-CDS-P-wetherbeei_contig15978:1234..1381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15978 1235..1381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15978.1.1prot_P-wetherbeei_contig15978.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15978 948..1381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15978.1.1

>prot_P-wetherbeei_contig15978.1.1 ID=prot_P-wetherbeei_contig15978.1.1|Name=mRNA_P-wetherbeei_contig15978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
VVEKDRPRGLTHSWNLAYQIFKREGYETFFVVNNDLIVPPGALERMVAAL
EDDDAAADEVGPLYHREGLGH
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mRNA from alignment at P-wetherbeei_contig15978:948..1381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15978.1.1 ID=mRNA_P-wetherbeei_contig15978.1.1|Name=mRNA_P-wetherbeei_contig15978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=434bp|location=Sequence derived from alignment at P-wetherbeei_contig15978:948..1381+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGAGAAGGACCGGCCGAGGGGTCTCACCCACAGCTGGAACCTCGC
CTACCAGATCTTTAAGGTGAGCTAAATAGGACGGGTTTTTTTGGGAGTGA
AAGAGTCCCTTAGAGGCAATCGTCGCACCTTCTGTCAGTTTCGCTGCCGT
TTTCACTTCTGCGGCACTTCCTACCTTTCAACTCAAAATTTCCTTTGTTC
CATCGTTGAAACGTTTCCGCGCGAAACCGCTTCAACCTCCACACCCATGT
GCCCCCTTTTTCCGTTTGTCCGCCCGCCCTCTCTCAGCGGGAGGGCTACG
AGACATTCTTTGTGGTGAACAACGACCTCATCGTGCCCCCGGGGGCGCTG
GAGCGCATGGTGGCGGCGCTGGAGGACGATGACGCAGCGGCGGACGAGGT
GGGACCACTCTACCACCGCGAGGGGCTCGGCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15978:948..1381+

>mRNA_P-wetherbeei_contig15978.1.1 ID=mRNA_P-wetherbeei_contig15978.1.1|Name=mRNA_P-wetherbeei_contig15978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig15978:948..1381+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGAGAAGGACCGGCCGAGGGGTCTCACCCACAGCTGGAACCTCGC
CTACCAGATCTTTAAGCGGGAGGGCTACGAGACATTCTTTGTGGTGAACA
ACGACCTCATCGTGCCCCCGGGGGCGCTGGAGCGCATGGTGGCGGCGCTG
GAGGACGATGACGCAGCGGCGGACGAGGTGGGACCACTCTACCACCGCGA
GGGGCTCGGCCAC
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